Wall clock time and date at job start Mon Mar 30 2020 05:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00105 * 2 1 4 4 C 1.38595 * 120.00111 * 180.02562 * 2 1 3 5 5 C 1.39475 * 120.46748 * 4.99559 * 4 2 1 6 6 C 1.40511 * 118.07419 * 179.97438 * 5 4 2 7 7 C 1.41597 * 120.62479 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00424 * 359.97438 * 7 6 5 9 9 C 1.40080 * 120.00235 * 179.97438 * 7 6 5 10 10 N 1.30694 * 119.99372 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00188 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46966 * 59.99971 * 11 9 7 13 13 H 1.48501 * 109.47031 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47111 * 299.99932 * 11 9 7 15 15 N 1.34235 * 118.75224 * 359.97438 * 6 5 4 16 16 C 1.31356 * 120.78037 * 0.02562 * 15 6 5 17 17 S 1.76201 * 118.92162 * 179.97438 * 16 15 6 18 18 C 1.81399 * 104.44737 * 89.99981 * 17 16 15 19 19 O 1.42103 * 104.27677 * 333.93249 * 17 16 15 20 20 O 1.42097 * 104.28070 * 206.07106 * 17 16 15 21 21 N 1.31998 * 122.15588 * 0.27736 * 16 15 6 22 22 H 1.08996 * 109.46767 * 269.99712 * 1 2 3 23 23 H 1.09004 * 109.47048 * 29.99794 * 1 2 3 24 24 H 1.09001 * 109.47087 * 150.00179 * 1 2 3 25 25 H 1.09002 * 109.46918 * 270.00412 * 3 2 1 26 26 H 1.09002 * 109.47257 * 29.99900 * 3 2 1 27 27 H 1.08999 * 109.47047 * 150.00094 * 3 2 1 28 28 H 1.08000 * 120.96203 * 0.02562 * 5 4 2 29 29 H 0.97008 * 119.99275 * 180.02562 * 10 9 7 30 30 H 1.09001 * 109.47190 * 59.99818 * 18 17 16 31 31 H 1.09004 * 109.47089 * 179.97438 * 18 17 16 32 32 H 1.09004 * 109.47568 * 299.99962 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1580 -1.2003 -0.0005 5 6 1.4745 -2.4115 -0.1058 6 6 2.2271 -3.5980 -0.1017 7 6 1.5886 -4.8575 -0.2063 8 1 0.5133 -4.9127 -0.2897 9 6 2.3517 -6.0322 -0.2015 10 7 3.6531 -5.9655 -0.1010 11 14 1.5095 -7.6938 -0.3401 12 1 0.7551 -7.7613 -1.6174 13 1 2.5316 -8.7707 -0.3119 14 1 0.5723 -7.8702 0.7983 15 7 3.5629 -3.5150 0.0020 16 6 4.1584 -2.3482 0.0986 17 16 5.9145 -2.2964 0.2332 18 6 6.4973 -2.2054 -1.4822 19 8 6.2588 -3.5481 0.8110 20 8 6.1780 -1.0776 0.9146 21 7 3.4840 -1.2135 0.1041 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 2.3791 1.5834 -1.0277 26 1 1.6085 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 0.3980 -2.4366 -0.1888 29 1 4.1816 -6.7790 -0.0980 30 1 6.0986 -1.3074 -1.9543 31 1 7.5867 -2.1687 -1.4944 32 1 6.1569 -3.0849 -2.0288 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260633199.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:31 Heat of formation + Delta-G solvation = -34.032166 kcal Electronic energy + Delta-G solvation = -19091.652565 eV Core-core repulsion = 15986.396521 eV Total energy + Delta-G solvation = -3105.256044 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.97472 -37.96880 -37.67359 -36.84115 -35.80327 -33.14718 -32.03081 -30.30446 -29.32339 -28.16763 -26.02355 -24.71990 -22.61244 -20.08405 -19.51004 -18.57836 -17.70764 -17.16942 -16.80608 -16.67077 -16.34978 -16.08111 -15.48421 -15.19341 -14.69861 -14.62032 -13.97119 -13.94783 -13.37600 -13.27755 -13.04569 -13.00996 -12.99293 -12.91821 -12.82002 -12.77134 -12.39783 -11.95567 -11.86533 -11.74422 -11.16778 -10.78726 -10.34221 -9.63619 -8.60842 -8.43078 -6.79225 -0.74919 0.31997 1.09278 1.40851 1.55114 1.56694 1.90273 2.17416 2.22794 2.66098 3.06602 3.29550 3.74392 3.98835 4.09991 4.28094 4.33276 4.50362 4.57232 4.67160 4.70381 4.84015 4.88921 4.90406 4.97646 5.12019 5.19758 5.37754 5.98012 6.14747 6.36693 6.62428 6.72049 7.10185 7.81028 8.32255 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.009153 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.421345 B = 3058.428217 C = 4759.930439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.626 5.626 3 C 0.102 3.898 4 C 0.403 3.597 5 C -0.375 4.375 6 C 0.235 3.765 7 C -0.438 4.438 8 H 0.100 0.900 9 C 0.019 3.981 10 N -0.734 5.734 11 Si 0.994 3.006 12 H -0.253 1.253 13 H -0.266 1.266 14 H -0.260 1.260 15 N -0.481 5.481 16 C -0.196 4.196 17 S 2.527 3.473 18 C -0.610 4.610 19 O -0.954 6.954 20 O -0.960 6.960 21 N -0.605 5.605 22 H 0.049 0.951 23 H 0.098 0.902 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.126 0.874 29 H 0.289 0.711 30 H 0.149 0.851 31 H 0.172 0.828 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 6.003 -5.089 7.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.343 5.343 3 C -0.041 4.041 4 C 0.167 3.833 5 C -0.406 4.406 6 C 0.108 3.892 7 C -0.471 4.471 8 H 0.118 0.882 9 C -0.206 4.206 10 N -0.355 5.355 11 Si 0.813 3.187 12 H -0.176 1.176 13 H -0.190 1.190 14 H -0.184 1.184 15 N -0.206 5.206 16 C -0.551 4.551 17 S 2.703 3.297 18 C -0.765 4.765 19 O -0.950 6.950 20 O -0.957 6.957 21 N -0.339 5.339 22 H 0.068 0.932 23 H 0.116 0.884 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.144 0.856 29 H 0.100 0.900 30 H 0.167 0.833 31 H 0.190 0.810 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.626 6.028 -4.199 7.373 hybrid contribution -1.926 -0.658 -0.462 2.087 sum -1.300 5.370 -4.662 7.229 Atomic orbital electron populations 1.21742 0.77247 1.03650 1.01628 1.46193 1.05914 1.02385 1.79843 1.21571 0.97302 0.83858 1.01355 1.18580 0.89006 0.86707 0.89049 1.21970 1.00484 0.92398 1.25743 1.19174 0.88142 0.93767 0.88081 1.20055 0.95600 0.89465 1.41936 0.88184 1.27178 0.95424 1.05352 0.92617 1.70154 1.07210 1.32176 1.25952 0.85085 0.78697 0.74655 0.80274 1.17643 1.19047 1.18383 1.69408 1.11769 1.22883 1.16548 1.36154 1.25021 0.89581 1.04331 1.04794 0.71835 0.73010 0.80017 1.29864 1.14385 1.13378 1.18899 1.93546 1.81024 1.44002 1.76453 1.93484 1.82869 1.46691 1.72609 1.67765 1.07537 1.29109 1.29488 0.93204 0.88366 0.91915 0.93126 0.89335 0.92567 0.85612 0.90021 0.83303 0.80967 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.74 10.31 127.77 1.32 4.06 16 2 N -0.63 -23.04 3.38 -753.48 -2.55 -25.58 16 3 C 0.10 3.08 10.51 127.77 1.34 4.42 16 4 C 0.40 19.14 7.39 133.10 0.98 20.12 16 5 C -0.38 -18.81 9.10 23.12 0.21 -18.60 16 6 C 0.23 13.15 6.58 40.16 0.26 13.41 16 7 C -0.44 -23.15 9.19 23.55 0.22 -22.93 16 8 H 0.10 4.81 7.85 -2.91 -0.02 4.79 16 9 C 0.02 0.95 5.50 85.31 0.47 1.42 16 10 N -0.73 -39.12 11.52 21.84 0.25 -38.87 16 11 Si 0.99 36.52 29.56 68.60 2.03 38.55 16 12 H -0.25 -8.75 7.11 99.48 0.71 -8.05 16 13 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 14 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 15 N -0.48 -27.15 7.67 -191.16 -1.47 -28.62 16 16 C -0.20 -9.96 7.37 180.95 1.33 -8.63 16 17 S 2.53 103.02 5.92 -56.49 -0.33 102.68 16 18 C -0.61 -15.89 10.80 113.37 1.22 -14.66 16 19 O -0.95 -45.81 17.70 -127.65 -2.26 -48.07 16 20 O -0.96 -42.03 17.70 -127.65 -2.26 -44.29 16 21 N -0.60 -29.96 8.84 -195.23 -1.73 -31.69 16 22 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.10 1.95 8.07 -2.38 -0.02 1.93 16 24 H 0.06 1.82 6.04 -2.39 -0.01 1.81 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 2.01 8.07 -2.39 -0.02 1.99 16 27 H 0.06 1.99 7.33 -2.39 -0.02 1.97 16 28 H 0.13 5.65 6.16 -2.91 -0.02 5.64 16 29 H 0.29 13.92 8.29 -92.70 -0.77 13.15 16 30 H 0.15 3.37 8.14 -2.39 -0.02 3.35 16 31 H 0.17 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.14 3.67 8.14 -2.39 -0.02 3.65 16 Total: -1.00 -78.88 292.88 0.19 -78.68 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.14 Total: 18.59 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 7.36 Total: -21.39 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -5.49 Total: -124.76 kcal Atomic # 8 Polarization: -87.84 SS G_CDS: -4.52 Total: -92.36 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.55 kcal Atomic # 16 Polarization: 103.02 SS G_CDS: -0.33 Total: 102.68 kcal Total: -78.88 0.19 -78.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260633199.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.653 kcal (2) G-P(sol) polarization free energy of solvation -78.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds