Wall clock time and date at job start Mon Mar 30 2020 04:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42104 * 110.54391 * 2 1 4 4 O 1.42102 * 110.54211 * 223.25214 * 2 1 3 5 5 O 1.52201 * 104.45368 * 111.62635 * 2 1 3 6 6 C 1.35900 * 113.99910 * 74.99881 * 5 2 1 7 7 C 1.38741 * 120.05470 * 89.99933 * 6 5 2 8 8 C 1.38139 * 119.94070 * 180.02562 * 7 6 5 9 9 C 1.38264 * 120.06253 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.94836 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47257 * 339.99988 * 10 9 8 12 12 N 1.46896 * 109.47182 * 219.99861 * 10 9 8 13 13 C 1.50704 * 109.47079 * 99.99703 * 10 9 8 14 14 H 1.07997 * 120.00051 * 5.59691 * 13 10 9 15 15 C 1.37876 * 119.99675 * 185.58794 * 13 10 9 16 16 N 1.31513 * 120.00058 * 194.82433 * 15 13 10 17 17 Si 1.86800 * 120.00245 * 14.83110 * 15 13 10 18 18 H 1.48503 * 109.47269 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.46971 * 299.99805 * 17 15 13 20 20 H 1.48502 * 109.47063 * 59.99616 * 17 15 13 21 21 C 1.38269 * 120.10437 * 0.29517 * 9 8 7 22 22 C 1.38140 * 120.06118 * 359.45323 * 21 9 8 23 23 H 1.09004 * 109.47088 * 308.36703 * 1 2 3 24 24 H 1.08998 * 109.47772 * 68.37522 * 1 2 3 25 25 H 1.09007 * 109.46989 * 188.37708 * 1 2 3 26 26 H 1.07998 * 120.02509 * 0.02562 * 7 6 5 27 27 H 1.08008 * 119.96943 * 180.02562 * 8 7 6 28 28 H 1.00902 * 111.00351 * 179.16409 * 12 10 9 29 29 H 1.00902 * 111.00162 * 303.12561 * 12 10 9 30 30 H 0.97007 * 119.99998 * 354.90431 * 16 15 13 31 31 H 1.08006 * 119.96711 * 179.70825 * 21 9 8 32 32 H 1.08000 * 120.03347 * 180.29532 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 8 2.1938 -0.5432 1.3701 6 6 2.0206 -1.8848 1.5002 7 6 3.0553 -2.7530 1.1831 8 6 2.8764 -4.1163 1.3158 9 6 1.6679 -4.6159 1.7647 10 6 1.4758 -6.1036 1.9090 11 1 2.2167 -6.6260 1.3039 12 7 0.1273 -6.4695 1.4557 13 6 1.6428 -6.4937 3.3551 14 1 1.7757 -5.7312 4.1082 15 6 1.6257 -7.8242 3.7165 16 7 1.4776 -8.1607 4.9792 17 14 1.8132 -9.1488 2.4127 18 1 1.7623 -10.4866 3.0553 19 1 0.7102 -9.0311 1.4255 20 1 3.1166 -8.9816 1.7210 21 6 0.6334 -3.7530 2.0761 22 6 0.8088 -2.3886 1.9501 23 1 -0.3633 0.6379 0.8058 24 1 -0.3634 0.3787 -0.9553 25 1 -0.3633 -1.0168 0.1497 26 1 3.9996 -2.3633 0.8328 27 1 3.6817 -4.7926 1.0694 28 1 -0.0215 -7.4647 1.5298 29 1 -0.5770 -5.9594 1.9674 30 1 1.4546 -7.4746 5.6645 31 1 -0.3113 -4.1459 2.4221 32 1 0.0020 -1.7147 2.1980 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260759588.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:20 Heat of formation + Delta-G solvation = -77.497755 kcal Electronic energy + Delta-G solvation = -18761.174292 eV Core-core repulsion = 15621.740688 eV Total energy + Delta-G solvation = -3139.433604 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.89581 -38.25683 -37.23867 -36.15060 -34.77402 -32.00214 -31.05637 -29.67256 -29.38593 -26.00033 -23.51774 -22.69493 -21.00233 -19.87698 -18.34200 -17.87663 -17.65735 -17.25601 -16.12934 -15.36923 -15.11292 -14.64475 -14.05395 -13.65437 -13.47490 -13.45964 -13.15692 -13.09120 -12.95397 -12.86501 -12.37777 -12.24848 -12.13853 -11.95889 -11.67463 -11.16561 -10.90637 -10.72130 -10.31993 -10.18187 -9.45701 -8.80863 -8.65027 -8.42599 -7.68626 -6.63745 -4.40395 0.02903 1.40430 1.58637 2.15678 3.18664 3.28351 3.43741 3.57698 3.86558 3.99720 4.24294 4.48516 4.69953 4.91062 4.98331 5.03953 5.21914 5.36285 5.44905 5.59524 5.67900 5.97016 6.11759 6.26387 6.39862 6.55347 6.64290 7.07714 7.21046 7.60373 8.04202 8.20047 8.33442 8.65860 9.33103 10.67249 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.044916 B = 0.004537 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.236596 B = 6169.674293 C = 6196.579124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.698 4.698 2 S 2.597 3.403 3 O -0.942 6.942 4 O -0.951 6.951 5 O -0.659 6.659 6 C 0.027 3.973 7 C -0.083 4.083 8 C -0.110 4.110 9 C 0.006 3.994 10 C 0.205 3.795 11 H 0.051 0.949 12 N -0.857 5.857 13 C -0.630 4.630 14 H 0.059 0.941 15 C 0.032 3.968 16 N -0.894 5.894 17 Si 1.048 2.952 18 H -0.283 1.283 19 H -0.272 1.272 20 H -0.280 1.280 21 C -0.097 4.097 22 C -0.129 4.129 23 H 0.131 0.869 24 H 0.132 0.868 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.135 0.865 28 H 0.334 0.666 29 H 0.325 0.675 30 H 0.270 0.730 31 H 0.134 0.866 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.131 11.758 -8.599 14.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.844 4.844 2 S 2.691 3.309 3 O -0.940 6.940 4 O -0.949 6.949 5 O -0.618 6.618 6 C -0.014 4.014 7 C -0.103 4.103 8 C -0.129 4.129 9 C 0.004 3.996 10 C 0.096 3.904 11 H 0.068 0.932 12 N -0.389 5.389 13 C -0.669 4.669 14 H 0.077 0.923 15 C -0.175 4.175 16 N -0.527 5.527 17 Si 0.876 3.124 18 H -0.209 1.209 19 H -0.198 1.198 20 H -0.206 1.206 21 C -0.116 4.116 22 C -0.150 4.150 23 H 0.149 0.851 24 H 0.151 0.849 25 H 0.153 0.847 26 H 0.150 0.850 27 H 0.153 0.847 28 H 0.150 0.850 29 H 0.136 0.864 30 H 0.081 0.919 31 H 0.152 0.848 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.177 10.654 -9.602 14.507 hybrid contribution -0.771 1.598 1.502 2.325 sum -2.949 12.253 -8.100 14.981 Atomic orbital electron populations 1.30779 1.29521 1.12277 1.11859 1.05327 0.77562 0.74458 0.73516 1.93620 1.77603 1.37958 1.84795 1.93662 1.76722 1.60345 1.64190 1.85660 1.86732 1.29759 1.59698 1.17902 0.96821 0.75722 1.10978 1.21143 0.98010 0.93268 0.97912 1.21000 0.98143 0.93745 0.99977 1.20433 0.91962 0.97769 0.89390 1.18426 0.89163 0.87047 0.95768 0.93162 1.59865 1.04906 1.11581 1.62520 1.22594 1.57442 0.94832 0.92063 0.92308 1.25884 0.92539 0.98734 1.00311 1.70854 1.43270 1.37638 1.00943 0.83949 0.77571 0.76196 0.74717 1.20853 1.19839 1.20594 1.20828 1.00107 0.90930 0.99687 1.21198 0.95711 0.96779 1.01277 0.85064 0.84941 0.84734 0.84963 0.84728 0.85041 0.86351 0.91945 0.84777 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.70 -5.64 10.28 101.05 1.04 -4.61 16 2 S 2.60 32.05 5.81 -107.50 -0.62 31.43 16 3 O -0.94 -14.16 18.09 -67.04 -1.21 -15.38 16 4 O -0.95 -14.46 16.26 -67.04 -1.09 -15.55 16 5 O -0.66 -9.23 10.05 -51.75 -0.52 -9.75 16 6 C 0.03 0.42 4.80 -39.21 -0.19 0.23 16 7 C -0.08 -1.36 9.05 -39.43 -0.36 -1.71 16 8 C -0.11 -1.93 9.66 -39.61 -0.38 -2.31 16 9 C 0.01 0.12 4.90 -104.60 -0.51 -0.40 16 10 C 0.21 4.42 2.48 -70.02 -0.17 4.24 16 11 H 0.05 1.10 6.71 -51.93 -0.35 0.75 16 12 N -0.86 -16.96 9.09 -6.65 -0.06 -17.02 16 13 C -0.63 -16.02 9.04 -34.44 -0.31 -16.33 16 14 H 0.06 1.65 7.99 -52.49 -0.42 1.23 16 15 C 0.03 0.85 5.41 -17.82 -0.10 0.76 16 16 N -0.89 -25.57 13.70 55.43 0.76 -24.81 16 17 Si 1.05 22.88 26.42 -169.99 -4.49 18.39 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.27 -5.36 5.62 56.52 0.32 -5.04 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 C -0.10 -1.63 9.27 -39.61 -0.37 -1.99 16 22 C -0.13 -1.87 8.46 -39.43 -0.33 -2.21 16 23 H 0.13 0.83 8.14 -51.92 -0.42 0.40 16 24 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.13 1.06 6.60 -51.92 -0.34 0.72 16 26 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.13 2.16 8.03 -52.48 -0.42 1.73 16 28 H 0.33 6.77 5.48 -39.29 -0.22 6.55 16 29 H 0.32 6.01 7.21 -39.29 -0.28 5.72 16 30 H 0.27 7.76 8.73 -40.82 -0.36 7.41 16 31 H 0.13 2.10 6.59 -52.48 -0.35 1.75 16 32 H 0.13 1.39 7.50 -52.49 -0.39 1.00 16 LS Contribution 281.78 15.07 4.25 4.25 Total: -1.00 -32.15 281.78 -7.95 -40.10 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -3.27 Total: 12.67 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -1.68 Total: -24.33 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.70 Total: -41.82 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -2.82 Total: -40.68 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.49 Total: 18.39 kcal Atomic # 16 Polarization: 32.05 SS G_CDS: -0.62 Total: 31.43 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.15 -7.95 -40.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260759588.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.395 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds