Wall clock time and date at job start Mon Mar 30 2020 04:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42104 * 110.54391 * 2 1 4 4 O 1.42102 * 110.54211 * 223.25214 * 2 1 3 5 5 O 1.52201 * 104.45368 * 111.62635 * 2 1 3 6 6 C 1.35900 * 113.99910 * 74.99881 * 5 2 1 7 7 C 1.38741 * 120.05470 * 89.99933 * 6 5 2 8 8 C 1.38139 * 119.94070 * 180.02562 * 7 6 5 9 9 C 1.38264 * 120.06253 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.94836 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47257 * 339.99988 * 10 9 8 12 12 N 1.46896 * 109.47182 * 219.99861 * 10 9 8 13 13 C 1.50704 * 109.47079 * 99.99703 * 10 9 8 14 14 H 1.07997 * 120.00051 * 5.59691 * 13 10 9 15 15 C 1.37876 * 119.99675 * 185.58794 * 13 10 9 16 16 N 1.31513 * 120.00058 * 194.82433 * 15 13 10 17 17 Si 1.86800 * 120.00245 * 14.83110 * 15 13 10 18 18 H 1.48503 * 109.47269 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.46971 * 299.99805 * 17 15 13 20 20 H 1.48502 * 109.47063 * 59.99616 * 17 15 13 21 21 C 1.38269 * 120.10437 * 0.29517 * 9 8 7 22 22 C 1.38140 * 120.06118 * 359.45323 * 21 9 8 23 23 H 1.09004 * 109.47088 * 308.36703 * 1 2 3 24 24 H 1.08998 * 109.47772 * 68.37522 * 1 2 3 25 25 H 1.09007 * 109.46989 * 188.37708 * 1 2 3 26 26 H 1.07998 * 120.02509 * 0.02562 * 7 6 5 27 27 H 1.08008 * 119.96943 * 180.02562 * 8 7 6 28 28 H 1.00902 * 111.00351 * 179.16409 * 12 10 9 29 29 H 1.00902 * 111.00162 * 303.12561 * 12 10 9 30 30 H 0.97007 * 119.99998 * 354.90431 * 16 15 13 31 31 H 1.08006 * 119.96711 * 179.70825 * 21 9 8 32 32 H 1.08000 * 120.03347 * 180.29532 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 8 2.1938 -0.5432 1.3701 6 6 2.0206 -1.8848 1.5002 7 6 3.0553 -2.7530 1.1831 8 6 2.8764 -4.1163 1.3158 9 6 1.6679 -4.6159 1.7647 10 6 1.4758 -6.1036 1.9090 11 1 2.2167 -6.6260 1.3039 12 7 0.1273 -6.4695 1.4557 13 6 1.6428 -6.4937 3.3551 14 1 1.7757 -5.7312 4.1082 15 6 1.6257 -7.8242 3.7165 16 7 1.4776 -8.1607 4.9792 17 14 1.8132 -9.1488 2.4127 18 1 1.7623 -10.4866 3.0553 19 1 0.7102 -9.0311 1.4255 20 1 3.1166 -8.9816 1.7210 21 6 0.6334 -3.7530 2.0761 22 6 0.8088 -2.3886 1.9501 23 1 -0.3633 0.6379 0.8058 24 1 -0.3634 0.3787 -0.9553 25 1 -0.3633 -1.0168 0.1497 26 1 3.9996 -2.3633 0.8328 27 1 3.6817 -4.7926 1.0694 28 1 -0.0215 -7.4647 1.5298 29 1 -0.5770 -5.9594 1.9674 30 1 1.4546 -7.4746 5.6645 31 1 -0.3113 -4.1459 2.4221 32 1 0.0020 -1.7147 2.1980 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260759588.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:20 Heat of formation + Delta-G solvation = -103.110626 kcal Electronic energy + Delta-G solvation = -18762.284949 eV Core-core repulsion = 15621.740688 eV Total energy + Delta-G solvation = -3140.544262 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.04924 -39.56540 -38.31045 -37.22029 -36.42811 -33.90991 -32.26674 -30.78360 -30.39198 -27.78096 -24.99696 -23.94532 -22.39881 -21.19339 -19.81985 -19.40650 -18.73225 -18.34136 -17.57479 -16.51964 -16.29521 -15.99333 -15.62411 -15.05690 -14.79050 -14.56442 -14.34497 -14.28869 -14.13063 -13.99037 -13.90446 -13.46430 -13.33493 -13.24156 -13.04294 -12.50036 -12.11780 -12.03643 -11.93819 -11.76905 -11.35167 -10.64210 -10.05302 -9.79122 -9.44335 -8.65882 -6.49594 -0.93689 0.16919 0.31424 1.10111 1.45607 1.53575 1.71596 2.42491 2.58517 2.66719 3.02128 3.02282 3.72106 3.79768 3.86280 3.92167 4.03049 4.22554 4.29971 4.39561 4.43271 4.82286 4.86822 4.97489 5.10500 5.12505 5.29399 5.60534 5.79742 5.87606 5.95186 6.39363 6.52772 6.83314 7.32171 8.56639 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.044916 B = 0.004537 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.236596 B = 6169.674293 C = 6196.579124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.596 3.404 3 O -0.975 6.975 4 O -0.986 6.986 5 O -0.666 6.666 6 C 0.031 3.969 7 C -0.098 4.098 8 C -0.119 4.119 9 C -0.029 4.029 10 C 0.210 3.790 11 H 0.048 0.952 12 N -0.844 5.844 13 C -0.623 4.623 14 H 0.019 0.981 15 C -0.016 4.016 16 N -0.931 5.931 17 Si 1.086 2.914 18 H -0.292 1.292 19 H -0.235 1.235 20 H -0.267 1.267 21 C -0.103 4.103 22 C -0.119 4.119 23 H 0.159 0.841 24 H 0.161 0.839 25 H 0.145 0.855 26 H 0.143 0.857 27 H 0.140 0.860 28 H 0.333 0.667 29 H 0.333 0.667 30 H 0.253 0.747 31 H 0.143 0.857 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.862 12.941 -10.269 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.825 4.825 2 S 2.696 3.304 3 O -0.973 6.973 4 O -0.984 6.984 5 O -0.625 6.625 6 C -0.011 4.011 7 C -0.118 4.118 8 C -0.138 4.138 9 C -0.030 4.030 10 C 0.100 3.900 11 H 0.066 0.934 12 N -0.376 5.376 13 C -0.662 4.662 14 H 0.037 0.963 15 C -0.215 4.215 16 N -0.566 5.566 17 Si 0.907 3.093 18 H -0.219 1.219 19 H -0.160 1.160 20 H -0.193 1.193 21 C -0.122 4.122 22 C -0.139 4.139 23 H 0.177 0.823 24 H 0.179 0.821 25 H 0.164 0.836 26 H 0.161 0.839 27 H 0.158 0.842 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.062 0.938 31 H 0.161 0.839 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.868 11.864 -11.282 16.823 hybrid contribution -0.281 1.441 2.027 2.503 sum -4.148 13.306 -9.255 16.730 Atomic orbital electron populations 1.30566 1.23118 1.13978 1.14802 1.05093 0.79848 0.73095 0.72352 1.93581 1.79847 1.38999 1.84853 1.93624 1.79041 1.60976 1.64765 1.85608 1.87680 1.28810 1.60426 1.18045 0.96909 0.76275 1.09833 1.21355 0.99140 0.93090 0.98248 1.21094 0.97956 0.94552 1.00190 1.20363 0.93617 0.96726 0.92330 1.18255 0.89859 0.89108 0.92797 0.93373 1.59796 1.04229 1.11499 1.62051 1.22755 1.55866 0.93803 0.93794 0.96287 1.27227 0.91738 1.01485 1.01078 1.70989 1.46656 1.37128 1.01814 0.83505 0.79394 0.73110 0.73304 1.21855 1.15974 1.19267 1.20991 0.99870 0.91849 0.99452 1.21548 0.96417 0.96404 0.99489 0.82254 0.82132 0.83615 0.83902 0.84247 0.85263 0.85451 0.93764 0.83892 0.80680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -7.49 10.28 113.37 1.17 -6.32 16 2 S 2.60 58.32 5.81 -56.49 -0.33 57.99 16 3 O -0.97 -27.98 18.09 -118.57 -2.15 -30.12 16 4 O -0.99 -28.72 16.26 -118.57 -1.93 -30.65 16 5 O -0.67 -17.25 10.05 -61.52 -0.62 -17.87 16 6 C 0.03 0.88 4.80 22.51 0.11 0.99 16 7 C -0.10 -3.13 9.05 22.37 0.20 -2.93 16 8 C -0.12 -4.16 9.66 22.25 0.21 -3.94 16 9 C -0.03 -1.09 4.90 -19.85 -0.10 -1.18 16 10 C 0.21 8.89 2.48 43.42 0.11 9.00 16 11 H 0.05 2.06 6.71 -2.39 -0.02 2.04 16 12 N -0.84 -31.89 9.09 -174.96 -1.59 -33.48 16 13 C -0.62 -32.22 9.04 25.60 0.23 -31.99 16 14 H 0.02 1.10 7.99 -2.91 -0.02 1.08 16 15 C -0.02 -0.83 5.41 84.65 0.46 -0.37 16 16 N -0.93 -54.84 13.70 21.45 0.29 -54.55 16 17 Si 1.09 45.55 26.42 68.60 1.81 47.37 16 18 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.24 -8.43 5.62 99.48 0.56 -7.88 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 21 C -0.10 -3.26 9.27 22.25 0.21 -3.06 16 22 C -0.12 -3.07 8.46 22.37 0.19 -2.88 16 23 H 0.16 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.16 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.15 1.48 6.60 -2.39 -0.02 1.47 16 26 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 27 H 0.14 4.50 8.03 -2.91 -0.02 4.48 16 28 H 0.33 12.70 5.48 -89.69 -0.49 12.21 16 29 H 0.33 11.73 7.21 -89.69 -0.65 11.08 16 30 H 0.25 15.27 8.73 -92.70 -0.81 14.46 16 31 H 0.14 4.16 6.59 -2.91 -0.02 4.14 16 32 H 0.18 2.83 7.50 -2.91 -0.02 2.81 16 Total: -1.00 -72.01 281.78 -1.87 -73.89 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -0.16 Total: 30.10 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 2.79 Total: -42.68 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -1.30 Total: -88.03 kcal Atomic # 8 Polarization: -73.94 SS G_CDS: -4.69 Total: -78.64 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.81 Total: 47.37 kcal Atomic # 16 Polarization: 58.32 SS G_CDS: -0.33 Total: 57.99 kcal Total: -72.01 -1.87 -73.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260759588.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.225 kcal (2) G-P(sol) polarization free energy of solvation -72.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds