Wall clock time and date at job start Mon Mar 30 2020 05:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00009 * 2 1 4 4 C 1.37931 * 120.00136 * 179.97438 * 2 1 3 5 5 N 1.32800 * 118.91626 * 179.73153 * 4 2 1 6 6 C 1.31774 * 121.00745 * 179.75570 * 5 4 2 7 7 C 1.41194 * 118.87225 * 0.50788 * 6 5 4 8 8 C 1.41267 * 120.97089 * 179.72805 * 7 6 5 9 9 H 1.07993 * 120.00268 * 209.35621 * 8 7 6 10 10 C 1.39884 * 119.99403 * 29.35627 * 8 7 6 11 11 N 1.30893 * 120.00214 * 11.39136 * 10 8 7 12 12 Si 1.86803 * 119.99404 * 191.38689 * 10 8 7 13 13 H 1.48500 * 109.47045 * 60.00396 * 12 10 8 14 14 H 1.48506 * 109.46941 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47187 * 299.99965 * 12 10 8 16 16 C 1.41166 * 118.06521 * 359.74800 * 7 6 5 17 17 S 1.76192 * 120.56788 * 180.02562 * 16 7 6 18 18 C 1.81404 * 104.45154 * 277.34395 * 17 16 7 19 19 O 1.42101 * 104.28107 * 33.41775 * 17 16 7 20 20 O 1.42104 * 104.28200 * 161.27478 * 17 16 7 21 21 N 1.31797 * 118.87147 * 359.97438 * 16 7 6 22 22 H 1.08999 * 109.46964 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47303 * 240.00525 * 1 2 3 24 24 H 1.08993 * 109.47163 * 120.00351 * 1 2 3 25 25 H 1.09000 * 109.47425 * 89.99858 * 3 2 1 26 26 H 1.09000 * 109.46696 * 209.99774 * 3 2 1 27 27 H 1.08999 * 109.47029 * 329.99266 * 3 2 1 28 28 H 1.08004 * 120.55954 * 180.23215 * 6 5 4 29 29 H 0.97001 * 119.99426 * 179.97438 * 11 10 8 30 30 H 1.09002 * 109.46857 * 60.00026 * 18 17 16 31 31 H 1.08994 * 109.47439 * 179.97438 * 18 17 16 32 32 H 1.08999 * 109.47094 * 300.00362 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1547 -1.1945 0.0005 5 7 3.4824 -1.1694 -0.0049 6 6 4.1826 -2.2857 0.0002 7 6 3.4973 -3.5202 0.0006 8 6 4.2036 -4.7437 0.0003 9 1 3.7673 -5.6189 -0.4579 10 6 5.4680 -4.8214 0.5934 11 7 5.9031 -3.8371 1.3385 12 14 6.5356 -6.3301 0.3222 13 1 6.8096 -6.4883 -1.1287 14 1 7.8177 -6.1673 1.0537 15 1 5.8280 -7.5344 0.8266 16 6 2.0859 -3.4964 0.0011 17 16 1.1643 -4.9980 0.0024 18 6 1.1183 -5.5025 -1.7395 19 8 1.9609 -5.8975 0.7611 20 8 -0.1305 -4.6144 0.4446 21 7 1.4691 -2.3316 0.0015 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3634 -0.5138 0.8900 24 1 -0.3633 -0.5138 -0.8899 25 1 2.3792 1.5835 1.0276 26 1 3.1499 1.1383 -0.5138 27 1 1.6085 2.0283 -0.5139 28 1 5.2622 -2.2568 -0.0006 29 1 6.7798 -3.8912 1.7500 30 1 2.1357 -5.6497 -2.1021 31 1 0.5612 -6.4346 -1.8333 32 1 0.6310 -4.7265 -2.3298 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260834929.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:37 Heat of formation + Delta-G solvation = -9.758013 kcal Electronic energy + Delta-G solvation = -19288.865402 eV Core-core repulsion = 16184.661965 eV Total energy + Delta-G solvation = -3104.203437 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.34253 -36.25214 -35.79569 -34.94213 -34.03523 -32.35095 -30.39026 -28.88055 -27.53018 -26.43051 -23.75981 -23.27526 -21.05786 -18.20647 -17.82971 -16.90859 -16.62994 -15.51639 -15.21509 -14.84573 -14.64201 -14.60911 -13.68327 -13.56772 -12.93567 -12.74491 -12.64218 -12.55173 -12.07536 -11.98141 -11.69657 -11.62113 -11.40529 -11.32936 -11.10439 -10.84385 -10.75939 -10.42693 -10.15645 -9.73311 -9.68114 -9.56543 -8.87044 -7.78191 -7.21828 -7.02102 -4.69131 1.00565 2.08447 2.59796 2.93429 2.96700 3.07433 3.70308 3.74492 3.92421 4.39919 4.68998 4.95623 5.28527 5.37772 5.46833 5.55092 5.72968 5.93633 5.97376 6.10310 6.21671 6.25503 6.33548 6.41096 6.62154 6.72152 6.87277 7.24447 7.77820 7.82158 7.93352 8.19288 8.33567 8.74704 9.57564 9.77162 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017722 B = 0.008957 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.620255 B = 3125.427302 C = 4425.691055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.617 5.617 3 C 0.121 3.879 4 C 0.428 3.572 5 N -0.523 5.523 6 C 0.155 3.845 7 C 0.043 3.957 8 C -0.408 4.408 9 H 0.097 0.903 10 C 0.075 3.925 11 N -0.781 5.781 12 Si 0.923 3.077 13 H -0.259 1.259 14 H -0.274 1.274 15 H -0.254 1.254 16 C -0.506 4.506 17 S 2.518 3.482 18 C -0.661 4.661 19 O -0.928 6.928 20 O -0.953 6.953 21 N -0.458 5.458 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.032 0.968 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.169 0.831 29 H 0.293 0.707 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 0.751 -5.278 5.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.342 5.342 3 C -0.024 4.024 4 C 0.073 3.927 5 N -0.241 5.241 6 C -0.027 4.027 7 C 0.033 3.967 8 C -0.438 4.438 9 H 0.115 0.885 10 C -0.146 4.146 11 N -0.405 5.405 12 Si 0.745 3.255 13 H -0.183 1.183 14 H -0.198 1.198 15 H -0.178 1.178 16 C -0.733 4.733 17 S 2.698 3.302 18 C -0.809 4.809 19 O -0.924 6.924 20 O -0.950 6.950 21 N -0.179 5.179 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.186 0.814 29 H 0.105 0.895 30 H 0.147 0.853 31 H 0.136 0.864 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.896 1.313 -4.434 5.457 hybrid contribution 1.450 -0.772 -0.559 1.735 sum -1.446 0.541 -4.993 5.227 Atomic orbital electron populations 1.21227 0.79316 0.99886 1.01529 1.44946 1.04244 1.01561 1.83469 1.21279 0.97127 0.83909 1.00042 1.18662 0.85234 0.85661 1.03150 1.67435 1.07091 1.33462 1.16070 1.23513 0.99712 0.86077 0.93444 1.18641 0.91216 0.95844 0.90993 1.19725 0.99849 0.95484 1.28753 0.88501 1.26048 0.97737 0.98605 0.92244 1.69698 1.19146 1.31714 1.19898 0.86077 0.78297 0.81127 0.79957 1.18292 1.19837 1.17804 1.32216 1.02565 1.11622 1.26887 1.04673 0.73825 0.74708 0.77023 1.30341 1.11191 1.11197 1.28151 1.93592 1.69433 1.63374 1.66010 1.93466 1.39871 1.82798 1.78823 1.67169 1.39361 0.96656 1.14690 0.92379 0.93247 0.93485 0.94904 0.91040 0.93045 0.81444 0.89535 0.85314 0.86416 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.14 10.11 59.85 0.60 2.74 16 2 N -0.62 -12.54 3.36 -191.88 -0.64 -13.18 16 3 C 0.12 1.99 10.40 59.85 0.62 2.61 16 4 C 0.43 10.44 8.17 -322.73 -2.64 7.80 16 5 N -0.52 -12.87 9.04 -13.36 -0.12 -12.99 16 6 C 0.16 3.86 9.95 -16.46 -0.16 3.70 16 7 C 0.04 1.08 5.55 -106.51 -0.59 0.49 16 8 C -0.41 -9.80 7.38 -37.82 -0.28 -10.08 16 9 H 0.10 2.15 6.05 -52.49 -0.32 1.83 16 10 C 0.07 1.71 5.26 -17.34 -0.09 1.62 16 11 N -0.78 -18.33 10.98 55.54 0.61 -17.72 16 12 Si 0.92 17.11 29.57 -169.99 -5.03 12.08 16 13 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 14 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 15 H -0.25 -4.83 7.11 56.52 0.40 -4.43 16 16 C -0.51 -12.41 6.64 -16.46 -0.11 -12.52 16 17 S 2.52 52.80 5.40 -107.50 -0.58 52.22 16 18 C -0.66 -10.03 10.80 101.05 1.09 -8.94 16 19 O -0.93 -21.63 15.15 -57.54 -0.87 -22.50 16 20 O -0.95 -22.12 17.71 -57.54 -1.02 -23.14 16 21 N -0.46 -11.48 9.20 -12.57 -0.12 -11.59 16 22 H 0.06 0.76 7.79 -51.93 -0.40 0.36 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 1.24 7.31 -51.93 -0.38 0.86 16 27 H 0.05 0.67 7.92 -51.93 -0.41 0.26 16 28 H 0.17 4.03 6.41 -52.48 -0.34 3.69 16 29 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 30 H 0.13 1.84 7.83 -51.92 -0.41 1.43 16 31 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.12 1.71 8.14 -51.92 -0.42 1.29 16 LS Contribution 288.28 15.07 4.34 4.34 Total: -1.00 -32.12 288.28 -8.48 -40.60 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.50 Total: 4.46 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -1.55 Total: -12.57 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.27 Total: -55.49 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -1.89 Total: -45.65 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Atomic # 16 Polarization: 52.80 SS G_CDS: -0.58 Total: 52.22 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.12 -8.48 -40.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260834929.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.841 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds