Wall clock time and date at job start Mon Mar 30 2020 05:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46613 * 2 1 4 4 C 1.53001 * 109.46859 * 240.00547 * 2 1 3 5 5 O 1.45202 * 109.47073 * 120.00147 * 2 1 3 6 6 C 1.34635 * 116.99764 * 60.00608 * 5 2 1 7 7 O 1.21496 * 120.00035 * 359.97438 * 6 5 2 8 8 N 1.34774 * 119.99489 * 179.97438 * 6 5 2 9 9 C 1.38177 * 120.00053 * 179.97438 * 8 6 5 10 10 N 1.30903 * 125.45490 * 359.97438 * 9 8 6 11 11 N 1.26275 * 117.63643 * 180.02562 * 10 9 8 12 12 C 1.32152 * 115.98284 * 359.97438 * 11 10 9 13 13 C 1.39819 * 126.13896 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99725 * 186.04440 * 13 12 11 15 15 C 1.40163 * 120.00666 * 6.05035 * 13 12 11 16 16 N 1.30767 * 120.00436 * 184.19170 * 15 13 12 17 17 Si 1.86809 * 119.99604 * 4.45659 * 15 13 12 18 18 H 1.48497 * 109.46876 * 179.72673 * 17 15 13 19 19 H 1.48497 * 109.47125 * 299.73358 * 17 15 13 20 20 H 1.48502 * 109.46596 * 59.72821 * 17 15 13 21 21 S 1.71223 * 125.46229 * 180.30400 * 9 8 6 22 22 H 1.09002 * 109.47343 * 299.99468 * 1 2 3 23 23 H 1.08994 * 109.47608 * 59.99522 * 1 2 3 24 24 H 1.09005 * 109.47255 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46460 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47547 * 299.99978 * 3 2 1 27 27 H 1.09001 * 109.47086 * 60.00959 * 3 2 1 28 28 H 1.09005 * 109.46794 * 299.99800 * 4 2 1 29 29 H 1.08994 * 109.47067 * 59.99600 * 4 2 1 30 30 H 1.08995 * 109.46936 * 180.02562 * 4 2 1 31 31 H 0.97003 * 120.00242 * 359.97438 * 8 6 5 32 32 H 0.96995 * 119.99849 * 355.14289 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9724 1.3382 7 8 0.9511 -2.5094 0.5039 8 7 2.0681 -2.6657 2.4165 9 6 1.6966 -3.9873 2.5735 10 7 0.9466 -4.6688 1.7449 11 7 0.6977 -5.8724 2.0347 12 6 1.2297 -6.3191 3.1589 13 6 1.0921 -7.6090 3.6807 14 1 1.4892 -7.8413 4.6578 15 6 0.4391 -8.6005 2.9358 16 7 0.2378 -9.7832 3.4561 17 14 -0.1373 -8.2347 1.1969 18 1 -0.7880 -9.4418 0.6270 19 1 -1.1106 -7.1135 1.2236 20 1 1.0287 -7.8581 0.3580 21 16 2.1368 -4.9936 3.8870 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.6766 -1.7488 -1.2494 29 1 1.6765 -0.2073 -2.1392 30 1 3.1299 -0.7216 -1.2491 31 1 2.6283 -2.2370 3.0824 32 1 0.6018 -9.9972 4.3293 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261161288.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:33 Heat of formation + Delta-G solvation = -38.193919 kcal Electronic energy + Delta-G solvation = -18610.967175 eV Core-core repulsion = 15505.530664 eV Total energy + Delta-G solvation = -3105.436511 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.57625 -39.20586 -37.12035 -34.71522 -34.23978 -33.64461 -30.18543 -27.42726 -27.32313 -26.58306 -23.95008 -22.46963 -20.65014 -19.77514 -18.61394 -18.14423 -16.82445 -16.27468 -15.97423 -15.69630 -14.50957 -14.39045 -14.18906 -13.89789 -13.46810 -13.02874 -12.85386 -12.52365 -12.29311 -12.16471 -11.85694 -11.80022 -11.65746 -11.20696 -11.16553 -10.46930 -10.35720 -10.19402 -10.09025 -9.79294 -9.56735 -8.84736 -8.49742 -8.32740 -7.92718 -7.75729 -5.17196 1.79755 1.94502 2.67871 2.77094 3.18257 3.45499 3.55394 3.81707 4.09778 4.22038 4.42297 4.73483 4.74885 4.77163 4.92001 5.41626 5.51759 5.55838 5.67056 5.73161 5.89582 5.94576 6.11764 6.25940 6.37878 6.44072 6.67080 6.91118 6.94070 7.34263 7.61540 7.73668 7.96243 8.76705 9.51571 10.25321 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035800 B = 0.005003 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.927210 B = 5595.052299 C = 6180.276033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.138 3.862 3 C -0.139 4.139 4 C -0.185 4.185 5 O -0.370 6.370 6 C 0.639 3.361 7 O -0.517 6.517 8 N -0.595 5.595 9 C 0.084 3.916 10 N -0.197 5.197 11 N -0.406 5.406 12 C 0.157 3.843 13 C -0.398 4.398 14 H 0.098 0.902 15 C 0.058 3.942 16 N -0.765 5.765 17 Si 1.109 2.891 18 H -0.306 1.306 19 H -0.254 1.254 20 H -0.274 1.274 21 S -0.044 6.044 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.415 0.585 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.996 14.585 -2.253 15.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.101 3.899 3 C -0.196 4.196 4 C -0.242 4.242 5 O -0.286 6.286 6 C 0.389 3.611 7 O -0.400 6.400 8 N -0.251 5.251 9 C -0.286 4.286 10 N -0.040 5.040 11 N -0.260 5.260 12 C -0.091 4.091 13 C -0.443 4.443 14 H 0.116 0.884 15 C -0.171 4.171 16 N -0.386 5.386 17 Si 0.936 3.064 18 H -0.236 1.236 19 H -0.179 1.179 20 H -0.200 1.200 21 S 0.198 5.802 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.251 0.749 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.708 13.811 -4.151 14.673 hybrid contribution 1.308 0.943 1.999 2.569 sum 4.016 14.754 -2.151 15.441 Atomic orbital electron populations 1.22525 0.94063 1.05497 1.02092 1.21998 0.94381 0.91217 0.82282 1.21844 1.02090 0.92757 1.02885 1.22524 1.01397 1.03977 0.96280 1.86237 1.72079 1.23750 1.46488 1.17955 0.80142 0.80378 0.82643 1.90999 1.38287 1.69261 1.41493 1.40309 1.53452 1.07737 1.23634 1.23748 1.13913 0.90660 1.00249 1.71055 1.09107 1.00265 1.23529 1.71669 1.32482 1.04596 1.17203 1.25832 0.93893 0.97084 0.92271 1.20252 1.28452 0.91709 1.03891 0.88393 1.27860 0.91117 0.90758 1.07383 1.70642 1.28851 1.20785 1.18308 0.82704 0.79734 0.73809 0.70129 1.23582 1.17924 1.20034 1.83802 1.59131 1.09518 1.27721 0.92336 0.91364 0.88971 0.91605 0.90304 0.91612 0.88973 0.91357 0.92328 0.74886 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 8.37 37.16 0.31 -2.11 16 2 C 0.14 1.80 1.13 -90.62 -0.10 1.70 16 3 C -0.14 -1.29 8.85 37.16 0.33 -0.96 16 4 C -0.18 -2.42 8.37 37.16 0.31 -2.11 16 5 O -0.37 -5.77 9.94 -40.31 -0.40 -6.17 16 6 C 0.64 12.23 8.01 54.05 0.43 12.66 16 7 O -0.52 -11.52 10.52 -19.27 -0.20 -11.72 16 8 N -0.59 -11.21 5.38 -17.41 -0.09 -11.30 16 9 C 0.08 1.93 8.11 -87.10 -0.71 1.22 16 10 N -0.20 -5.26 9.74 29.94 0.29 -4.96 16 11 N -0.41 -11.11 6.96 31.51 0.22 -10.89 16 12 C 0.16 4.01 6.92 -16.82 -0.12 3.89 16 13 C -0.40 -9.94 9.85 -38.27 -0.38 -10.32 16 14 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 15 C 0.06 1.44 5.52 -17.28 -0.10 1.35 16 16 N -0.76 -18.73 13.65 55.56 0.76 -17.97 16 17 Si 1.11 26.76 25.90 -169.99 -4.40 22.36 16 18 H -0.31 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.25 -6.46 6.76 56.52 0.38 -6.08 16 20 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 21 S -0.04 -0.94 23.26 -107.50 -2.50 -3.44 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.09 1.54 5.88 -51.93 -0.31 1.23 16 25 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.54 5.88 -51.93 -0.31 1.23 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.42 6.17 8.93 -40.82 -0.36 5.81 16 32 H 0.29 6.66 8.72 -40.82 -0.36 6.31 16 LS Contribution 285.90 15.07 4.31 4.31 Total: -1.00 -29.92 285.90 -5.56 -35.48 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -3.53 Total: -1.00 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.01 Total: 5.32 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 1.18 Total: -45.13 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.60 Total: -17.89 kcal Atomic # 14 Polarization: 26.76 SS G_CDS: -4.40 Total: 22.36 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.50 Total: -3.44 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.92 -5.56 -35.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161288.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.712 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds