Wall clock time and date at job start Mon Mar 30 2020 05:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46613 * 2 1 4 4 C 1.53001 * 109.46859 * 240.00547 * 2 1 3 5 5 O 1.45202 * 109.47073 * 120.00147 * 2 1 3 6 6 C 1.34635 * 116.99764 * 60.00608 * 5 2 1 7 7 O 1.21496 * 120.00035 * 359.97438 * 6 5 2 8 8 N 1.34774 * 119.99489 * 179.97438 * 6 5 2 9 9 C 1.38177 * 120.00053 * 179.97438 * 8 6 5 10 10 N 1.30903 * 125.45490 * 359.97438 * 9 8 6 11 11 N 1.26275 * 117.63643 * 180.02562 * 10 9 8 12 12 C 1.32152 * 115.98284 * 359.97438 * 11 10 9 13 13 C 1.39819 * 126.13896 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99725 * 186.04440 * 13 12 11 15 15 C 1.40163 * 120.00666 * 6.05035 * 13 12 11 16 16 N 1.30767 * 120.00436 * 184.19170 * 15 13 12 17 17 Si 1.86809 * 119.99604 * 4.45659 * 15 13 12 18 18 H 1.48497 * 109.46876 * 179.72673 * 17 15 13 19 19 H 1.48497 * 109.47125 * 299.73358 * 17 15 13 20 20 H 1.48502 * 109.46596 * 59.72821 * 17 15 13 21 21 S 1.71223 * 125.46229 * 180.30400 * 9 8 6 22 22 H 1.09002 * 109.47343 * 299.99468 * 1 2 3 23 23 H 1.08994 * 109.47608 * 59.99522 * 1 2 3 24 24 H 1.09005 * 109.47255 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46460 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47547 * 299.99978 * 3 2 1 27 27 H 1.09001 * 109.47086 * 60.00959 * 3 2 1 28 28 H 1.09005 * 109.46794 * 299.99800 * 4 2 1 29 29 H 1.08994 * 109.47067 * 59.99600 * 4 2 1 30 30 H 1.08995 * 109.46936 * 180.02562 * 4 2 1 31 31 H 0.97003 * 120.00242 * 359.97438 * 8 6 5 32 32 H 0.96995 * 119.99849 * 355.14289 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9724 1.3382 7 8 0.9511 -2.5094 0.5039 8 7 2.0681 -2.6657 2.4165 9 6 1.6966 -3.9873 2.5735 10 7 0.9466 -4.6688 1.7449 11 7 0.6977 -5.8724 2.0347 12 6 1.2297 -6.3191 3.1589 13 6 1.0921 -7.6090 3.6807 14 1 1.4892 -7.8413 4.6578 15 6 0.4391 -8.6005 2.9358 16 7 0.2378 -9.7832 3.4561 17 14 -0.1373 -8.2347 1.1969 18 1 -0.7880 -9.4418 0.6270 19 1 -1.1106 -7.1135 1.2236 20 1 1.0287 -7.8581 0.3580 21 16 2.1368 -4.9936 3.8870 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.6766 -1.7488 -1.2494 29 1 1.6765 -0.2073 -2.1392 30 1 3.1299 -0.7216 -1.2491 31 1 2.6283 -2.2370 3.0824 32 1 0.6018 -9.9972 4.3293 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261161288.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:32 Heat of formation + Delta-G solvation = -58.903255 kcal Electronic energy + Delta-G solvation = -18611.865199 eV Core-core repulsion = 15505.530664 eV Total energy + Delta-G solvation = -3106.334535 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.04430 -41.03417 -38.53433 -36.46592 -35.94665 -34.86549 -32.06165 -28.44183 -28.37050 -28.25545 -25.73256 -24.12385 -22.20744 -21.44619 -20.09732 -19.87837 -18.49780 -17.89473 -17.42856 -17.07902 -16.20429 -16.03708 -15.65234 -15.28075 -14.93492 -14.76774 -14.47901 -14.04054 -13.50686 -13.31349 -13.06668 -12.90452 -12.85322 -12.64152 -12.34837 -12.30580 -12.07627 -11.98904 -11.53278 -11.39099 -11.29023 -10.66302 -10.35843 -10.23799 -9.72407 -9.63577 -7.06927 0.06981 0.08871 0.78599 1.25458 1.41709 1.54081 1.77591 1.88452 2.20716 2.34095 2.81752 3.02292 3.75737 3.79592 3.94456 4.24167 4.38480 4.57445 4.61450 4.76290 4.78183 4.84003 4.89438 5.07191 5.09339 5.21879 5.29706 5.35328 5.47623 5.49578 5.74302 6.06518 6.21275 7.28270 7.65185 8.35608 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035800 B = 0.005003 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.927210 B = 5595.052299 C = 6180.276033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.124 3.876 3 C -0.130 4.130 4 C -0.182 4.182 5 O -0.358 6.358 6 C 0.640 3.360 7 O -0.548 6.548 8 N -0.588 5.588 9 C 0.101 3.899 10 N -0.250 5.250 11 N -0.437 5.437 12 C 0.126 3.874 13 C -0.414 4.414 14 H 0.107 0.893 15 C 0.045 3.955 16 N -0.773 5.773 17 Si 1.137 2.863 18 H -0.289 1.289 19 H -0.280 1.280 20 H -0.293 1.293 21 S 0.037 5.963 22 H 0.064 0.936 23 H 0.095 0.905 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.435 0.565 32 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.065 16.886 -1.866 17.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.088 3.912 3 C -0.187 4.187 4 C -0.239 4.239 5 O -0.274 6.274 6 C 0.391 3.609 7 O -0.433 6.433 8 N -0.247 5.247 9 C -0.271 4.271 10 N -0.092 5.092 11 N -0.289 5.289 12 C -0.124 4.124 13 C -0.460 4.460 14 H 0.125 0.875 15 C -0.183 4.183 16 N -0.395 5.395 17 Si 0.966 3.034 18 H -0.218 1.218 19 H -0.207 1.207 20 H -0.221 1.221 21 S 0.280 5.720 22 H 0.083 0.917 23 H 0.114 0.886 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.124 0.876 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.275 0.725 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.790 16.136 -3.760 16.996 hybrid contribution 1.047 0.479 1.860 2.188 sum 4.837 16.614 -1.900 17.408 Atomic orbital electron populations 1.22484 0.94301 1.03263 1.03834 1.22517 0.94498 0.92997 0.81148 1.21874 1.02600 0.89645 1.04618 1.22484 1.01759 1.01902 0.97740 1.86282 1.71647 1.21560 1.47868 1.18121 0.79436 0.81314 0.82030 1.91017 1.39464 1.70289 1.42559 1.40348 1.53549 1.06443 1.24398 1.24251 1.11143 0.91887 0.99864 1.71061 1.11849 1.00715 1.25543 1.71626 1.33549 1.05244 1.18529 1.26101 0.94847 0.98661 0.92806 1.20294 1.29514 0.91744 1.04412 0.87525 1.27943 0.91450 0.91121 1.07777 1.70600 1.29247 1.20628 1.18993 0.82263 0.78193 0.73191 0.69782 1.21753 1.20694 1.22104 1.83393 1.57040 1.06415 1.25161 0.91670 0.88593 0.93055 0.90837 0.87601 0.90845 0.93054 0.88585 0.91660 0.72505 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.51 8.37 71.98 0.60 -3.90 16 2 C 0.12 2.97 1.13 -10.79 -0.01 2.96 16 3 C -0.13 -1.91 8.85 71.98 0.64 -1.28 16 4 C -0.18 -4.50 8.37 71.98 0.60 -3.90 16 5 O -0.36 -10.55 9.94 -55.44 -0.55 -11.10 16 6 C 0.64 24.08 8.01 129.79 1.04 25.12 16 7 O -0.55 -24.87 10.52 19.86 0.21 -24.66 16 8 N -0.59 -21.31 5.38 -439.41 -2.36 -23.67 16 9 C 0.10 4.54 8.11 179.12 1.45 5.99 16 10 N -0.25 -13.53 9.74 -59.19 -0.58 -14.11 16 11 N -0.44 -24.36 6.96 -54.22 -0.38 -24.74 16 12 C 0.13 6.40 6.92 85.03 0.59 6.99 16 13 C -0.41 -20.64 9.85 23.12 0.23 -20.42 16 14 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 15 C 0.05 2.27 5.52 85.32 0.47 2.74 16 16 N -0.77 -37.46 13.65 21.87 0.30 -37.16 16 17 Si 1.14 55.74 25.90 68.60 1.78 57.52 16 18 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.28 -14.82 6.76 99.48 0.67 -14.15 16 20 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 21 S 0.04 1.53 23.26 -56.49 -1.31 0.22 16 22 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.05 1.73 5.88 -2.38 -0.01 1.71 16 25 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 1.73 5.88 -2.38 -0.01 1.71 16 29 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.44 11.84 8.93 -92.71 -0.83 11.01 16 32 H 0.30 13.49 8.72 -92.71 -0.81 12.68 16 Total: -1.00 -65.77 285.90 2.98 -62.80 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: 0.26 Total: 0.61 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 5.61 Total: 14.31 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -3.02 Total: -99.69 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -0.34 Total: -35.77 kcal Atomic # 14 Polarization: 55.74 SS G_CDS: 1.78 Total: 57.52 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.31 Total: 0.22 kcal Total: -65.77 2.98 -62.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161288.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.893 kcal (2) G-P(sol) polarization free energy of solvation -65.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds