Wall clock time and date at job start Mon Mar 30 2020 04:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29847 * 127.31573 * 2 1 4 4 O 1.20564 * 112.93559 * 180.02562 * 3 2 1 5 5 C 1.33761 * 113.30683 * 359.97438 * 4 3 2 6 6 C 1.50701 * 127.06273 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.64049 * 179.59758 * 6 5 4 8 8 C 1.53873 * 109.64734 * 300.02398 * 6 5 4 9 9 C 1.55041 * 106.62348 * 166.90413 * 8 6 5 10 10 S 1.83298 * 102.56783 * 317.56632 * 9 8 6 11 11 O 1.42099 * 109.35244 * 136.61187 * 10 9 8 12 12 O 1.42098 * 109.35043 * 269.68279 * 10 9 8 13 13 C 1.54641 * 109.46134 * 59.19869 * 6 5 4 14 14 C 1.39660 * 105.87002 * 0.25849 * 5 4 3 15 15 C 1.41480 * 128.74038 * 179.73089 * 14 5 4 16 16 H 1.08001 * 119.99409 * 30.43422 * 15 14 5 17 17 C 1.39724 * 119.99848 * 210.42489 * 15 14 5 18 18 N 1.31009 * 120.00589 * 16.50387 * 17 15 14 19 19 Si 1.86810 * 119.99804 * 196.49895 * 17 15 14 20 20 H 1.48497 * 109.47059 * 60.00148 * 19 17 15 21 21 H 1.48496 * 109.46915 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46820 * 300.00607 * 19 17 15 23 23 H 1.08999 * 109.47294 * 89.67327 * 1 2 3 24 24 H 1.08998 * 109.47160 * 209.67551 * 1 2 3 25 25 H 1.09007 * 109.46736 * 329.67584 * 1 2 3 26 26 H 1.09000 * 110.02651 * 47.60890 * 8 6 5 27 27 H 1.09001 * 110.06653 * 286.21552 * 8 6 5 28 28 H 1.09003 * 110.79104 * 199.30133 * 9 8 6 29 29 H 1.09003 * 110.79093 * 75.83462 * 9 8 6 30 30 H 1.08998 * 110.39113 * 93.40732 * 13 6 5 31 31 H 1.09000 * 110.44102 * 331.08103 * 13 6 5 32 32 H 0.96996 * 120.00495 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2942 1.0327 0.0000 4 8 3.4621 0.7333 -0.0005 5 6 3.6696 -0.5882 -0.0004 6 6 4.9986 -1.2988 -0.0014 7 1 4.8375 -2.3768 0.0062 8 6 5.7956 -0.9037 -1.2569 9 6 7.2502 -1.3899 -1.0301 10 16 7.5555 -0.9327 0.7184 11 8 8.2176 -2.0040 1.3766 12 8 8.1019 0.3779 0.7739 13 6 5.8061 -0.8831 1.2501 14 6 2.4018 -1.1739 -0.0058 15 6 2.0609 -2.5470 -0.0130 16 1 2.7126 -3.2676 0.4586 17 6 0.8811 -2.9706 -0.6302 18 7 0.2593 -2.1786 -1.4684 19 14 0.1905 -4.6665 -0.2604 20 1 -0.1049 -4.7750 1.1908 21 1 -1.0584 -4.8724 -1.0371 22 1 1.1861 -5.7002 -0.6415 23 1 -0.3634 0.0059 -1.0276 24 1 -0.3633 -0.8929 0.5088 25 1 -0.3633 0.8871 0.5189 26 1 5.7793 0.1788 -1.3841 27 1 5.3726 -1.3890 -2.1365 28 1 7.9405 -0.8677 -1.6927 29 1 7.3231 -2.4689 -1.1663 30 1 5.6374 -1.5895 2.0629 31 1 5.5336 0.1254 1.5614 32 1 -0.5595 -2.4729 -1.8971 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261238824.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:16 Heat of formation + Delta-G solvation = -30.168399 kcal Electronic energy + Delta-G solvation = -19082.808831 eV Core-core repulsion = 15945.427582 eV Total energy + Delta-G solvation = -3137.381249 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.86830 -36.86239 -36.46370 -35.78267 -34.54114 -32.06544 -30.85982 -29.11577 -27.48028 -25.97870 -24.64858 -21.61499 -21.12845 -18.66098 -18.21817 -17.45324 -16.53388 -16.42182 -15.95228 -15.45340 -15.20556 -14.92539 -14.16328 -13.85283 -13.55320 -12.88743 -12.32975 -12.16806 -12.05595 -12.00047 -11.93164 -11.82259 -11.79923 -11.46780 -11.23270 -11.19951 -11.10991 -10.56820 -10.46610 -10.31606 -9.98747 -9.48038 -9.26067 -8.21658 -7.77069 -6.87985 -4.56043 0.25037 2.64883 2.81959 3.00118 3.02417 3.09148 3.72109 3.78985 3.85480 4.16535 4.52732 4.77406 4.86592 4.88716 5.02934 5.16218 5.32742 5.64954 5.77735 5.79650 5.93732 6.04192 6.32516 6.38436 6.67528 6.77607 6.83746 6.90027 7.10301 7.31105 7.53525 8.10329 8.50329 8.69169 9.98403 10.11605 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.006162 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.807210 B = 4542.910018 C = 5287.965488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 C -0.013 4.013 3 N -0.388 5.388 4 O 0.070 5.930 5 C -0.244 4.244 6 C 0.051 3.949 7 H 0.108 0.892 8 C -0.114 4.114 9 C -0.586 4.586 10 S 2.378 3.622 11 O -0.951 6.951 12 O -0.945 6.945 13 C -0.580 4.580 14 C 0.049 3.951 15 C -0.451 4.451 16 H 0.083 0.917 17 C 0.079 3.921 18 N -0.800 5.800 19 Si 0.908 3.092 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.265 1.265 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.033 0.967 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.727 -1.795 0.013 6.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.174 4.174 3 N -0.094 5.094 4 O 0.001 5.999 5 C -0.305 4.305 6 C 0.030 3.970 7 H 0.126 0.874 8 C -0.153 4.153 9 C -0.716 4.716 10 S 2.563 3.437 11 O -0.948 6.948 12 O -0.942 6.942 13 C -0.711 4.711 14 C 0.044 3.956 15 C -0.482 4.482 16 H 0.101 0.899 17 C -0.138 4.138 18 N -0.426 5.426 19 Si 0.733 3.267 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.190 1.190 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.106 0.894 27 H 0.118 0.882 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.189 -0.327 0.365 6.209 hybrid contribution -1.295 -1.789 -0.362 2.238 sum 4.894 -2.116 0.003 5.332 Atomic orbital electron populations 1.19778 0.87591 0.99400 1.02139 1.24584 0.97458 0.89227 1.06115 1.73000 0.90290 1.25599 1.20502 1.84064 1.20057 1.24049 1.71768 1.23057 0.95110 0.83016 1.29310 1.19410 0.88768 0.99988 0.88792 0.87384 1.22366 0.89314 1.03133 1.00507 1.30596 1.06244 1.11383 1.23352 1.09269 0.79221 0.75391 0.79779 1.93575 1.72575 1.55894 1.72753 1.93591 1.76769 1.37854 1.85999 1.30717 1.20464 1.11893 1.08017 1.19579 0.88007 0.93809 0.94189 1.18543 1.05772 0.90638 1.33263 0.89899 1.25733 0.95811 0.99207 0.93053 1.69936 1.15970 1.37082 1.19625 0.86363 0.78740 0.81988 0.79648 1.18944 1.20342 1.19000 0.90511 0.91775 0.94772 0.89405 0.88172 0.84886 0.84615 0.84487 0.84296 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.69 8.55 36.01 0.31 -0.38 16 2 C -0.01 -0.32 7.23 -79.61 -0.58 -0.90 16 3 N -0.39 -9.53 11.96 34.99 0.42 -9.11 16 4 O 0.07 1.61 10.98 18.00 0.20 1.81 16 5 C -0.24 -5.30 6.04 -33.78 -0.20 -5.50 16 6 C 0.05 0.84 3.04 -90.45 -0.27 0.56 16 7 H 0.11 1.70 7.64 -51.93 -0.40 1.30 16 8 C -0.11 -1.58 5.79 -25.20 -0.15 -1.72 16 9 C -0.59 -6.30 7.31 38.24 0.28 -6.02 16 10 S 2.38 31.04 6.09 -107.50 -0.66 30.39 16 11 O -0.95 -14.94 18.15 -57.73 -1.05 -15.99 16 12 O -0.94 -15.37 18.15 -57.73 -1.05 -16.42 16 13 C -0.58 -8.12 6.76 38.02 0.26 -7.86 16 14 C 0.05 1.20 5.89 -104.31 -0.61 0.59 16 15 C -0.45 -10.84 9.03 -37.79 -0.34 -11.18 16 16 H 0.08 1.88 7.74 -52.49 -0.41 1.47 16 17 C 0.08 1.82 4.71 -17.35 -0.08 1.74 16 18 N -0.80 -18.92 9.79 55.54 0.54 -18.37 16 19 Si 0.91 17.38 29.59 -169.99 -5.03 12.35 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 21 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 23 H 0.08 1.71 7.24 -51.93 -0.38 1.33 16 24 H 0.06 1.41 7.22 -51.93 -0.37 1.04 16 25 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 27 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.14 1.71 8.14 -51.93 -0.42 1.29 16 31 H 0.14 2.02 7.82 -51.93 -0.41 1.61 16 32 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 LS Contribution 285.15 15.07 4.30 4.30 Total: -1.00 -31.15 285.15 -7.35 -38.49 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -3.63 Total: 3.22 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: -1.39 Total: -30.67 kcal Atomic # 7 Polarization: -28.44 SS G_CDS: 0.96 Total: -27.48 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -1.90 Total: -30.60 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Atomic # 16 Polarization: 31.04 SS G_CDS: -0.66 Total: 30.39 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.15 -7.35 -38.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261238824.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.324 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds