Wall clock time and date at job start Mon Mar 30 2020 04:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29847 * 127.31573 * 2 1 4 4 O 1.20564 * 112.93559 * 180.02562 * 3 2 1 5 5 C 1.33761 * 113.30683 * 359.97438 * 4 3 2 6 6 C 1.50701 * 127.06273 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.64049 * 179.59758 * 6 5 4 8 8 C 1.53873 * 109.64734 * 300.02398 * 6 5 4 9 9 C 1.55041 * 106.62348 * 166.90413 * 8 6 5 10 10 S 1.83298 * 102.56783 * 317.56632 * 9 8 6 11 11 O 1.42099 * 109.35244 * 136.61187 * 10 9 8 12 12 O 1.42098 * 109.35043 * 269.68279 * 10 9 8 13 13 C 1.54641 * 109.46134 * 59.19869 * 6 5 4 14 14 C 1.39660 * 105.87002 * 0.25849 * 5 4 3 15 15 C 1.41480 * 128.74038 * 179.73089 * 14 5 4 16 16 H 1.08001 * 119.99409 * 30.43422 * 15 14 5 17 17 C 1.39724 * 119.99848 * 210.42489 * 15 14 5 18 18 N 1.31009 * 120.00589 * 16.50387 * 17 15 14 19 19 Si 1.86810 * 119.99804 * 196.49895 * 17 15 14 20 20 H 1.48497 * 109.47059 * 60.00148 * 19 17 15 21 21 H 1.48496 * 109.46915 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46820 * 300.00607 * 19 17 15 23 23 H 1.08999 * 109.47294 * 89.67327 * 1 2 3 24 24 H 1.08998 * 109.47160 * 209.67551 * 1 2 3 25 25 H 1.09007 * 109.46736 * 329.67584 * 1 2 3 26 26 H 1.09000 * 110.02651 * 47.60890 * 8 6 5 27 27 H 1.09001 * 110.06653 * 286.21552 * 8 6 5 28 28 H 1.09003 * 110.79104 * 199.30133 * 9 8 6 29 29 H 1.09003 * 110.79093 * 75.83462 * 9 8 6 30 30 H 1.08998 * 110.39113 * 93.40732 * 13 6 5 31 31 H 1.09000 * 110.44102 * 331.08103 * 13 6 5 32 32 H 0.96996 * 120.00495 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2942 1.0327 0.0000 4 8 3.4621 0.7333 -0.0005 5 6 3.6696 -0.5882 -0.0004 6 6 4.9986 -1.2988 -0.0014 7 1 4.8375 -2.3768 0.0062 8 6 5.7956 -0.9037 -1.2569 9 6 7.2502 -1.3899 -1.0301 10 16 7.5555 -0.9327 0.7184 11 8 8.2176 -2.0040 1.3766 12 8 8.1019 0.3779 0.7739 13 6 5.8061 -0.8831 1.2501 14 6 2.4018 -1.1739 -0.0058 15 6 2.0609 -2.5470 -0.0130 16 1 2.7126 -3.2676 0.4586 17 6 0.8811 -2.9706 -0.6302 18 7 0.2593 -2.1786 -1.4684 19 14 0.1905 -4.6665 -0.2604 20 1 -0.1049 -4.7750 1.1908 21 1 -1.0584 -4.8724 -1.0371 22 1 1.1861 -5.7002 -0.6415 23 1 -0.3634 0.0059 -1.0276 24 1 -0.3633 -0.8929 0.5088 25 1 -0.3633 0.8871 0.5189 26 1 5.7793 0.1788 -1.3841 27 1 5.3726 -1.3890 -2.1365 28 1 7.9405 -0.8677 -1.6927 29 1 7.3231 -2.4689 -1.1663 30 1 5.6374 -1.5895 2.0629 31 1 5.5336 0.1254 1.5614 32 1 -0.5595 -2.4729 -1.8971 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261238824.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:15 Heat of formation + Delta-G solvation = -51.488478 kcal Electronic energy + Delta-G solvation = -19083.733339 eV Core-core repulsion = 15945.427582 eV Total energy + Delta-G solvation = -3138.305757 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.71702 -38.04240 -37.70822 -36.97094 -36.28323 -33.86010 -32.34461 -30.45080 -29.26690 -27.65479 -25.92239 -23.08142 -22.75122 -19.87496 -19.73306 -19.22278 -17.88256 -17.67712 -17.63487 -16.80626 -16.64317 -16.43594 -15.51887 -15.01401 -14.87936 -14.37001 -13.93912 -13.86715 -13.59645 -13.25495 -13.15562 -13.13657 -13.00646 -12.95660 -12.82106 -12.65337 -12.60010 -12.00937 -11.84903 -11.60218 -11.30694 -11.12353 -10.95874 -10.05371 -9.54398 -8.58241 -6.34717 -0.82232 1.07965 1.43276 1.46725 1.54605 1.67814 1.96027 2.26174 2.69525 2.91125 3.13022 3.19254 3.61963 3.69012 3.92629 3.99082 4.04609 4.15810 4.30022 4.68991 4.72362 4.90136 4.90749 5.00838 5.06758 5.11031 5.21657 5.27800 5.39222 5.57576 5.73421 6.30960 6.73967 6.92954 8.15159 8.43281 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.006162 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.807210 B = 4542.910018 C = 5287.965488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 C -0.040 4.040 3 N -0.409 5.409 4 O 0.070 5.930 5 C -0.227 4.227 6 C 0.042 3.958 7 H 0.116 0.884 8 C -0.116 4.116 9 C -0.556 4.556 10 S 2.404 3.596 11 O -0.974 6.974 12 O -0.977 6.977 13 C -0.583 4.583 14 C 0.007 3.993 15 C -0.477 4.477 16 H 0.089 0.911 17 C 0.044 3.956 18 N -0.828 5.828 19 Si 0.974 3.026 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.259 1.259 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.149 0.851 31 H 0.130 0.870 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.786 -3.160 -0.497 7.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.199 4.199 3 N -0.116 5.116 4 O 0.001 5.999 5 C -0.289 4.289 6 C 0.022 3.978 7 H 0.134 0.866 8 C -0.155 4.155 9 C -0.688 4.688 10 S 2.592 3.408 11 O -0.971 6.971 12 O -0.974 6.974 13 C -0.713 4.713 14 C 0.002 3.998 15 C -0.508 4.508 16 H 0.107 0.893 17 C -0.171 4.171 18 N -0.455 5.455 19 Si 0.796 3.204 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.183 1.183 23 H 0.089 0.911 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.123 0.877 28 H 0.181 0.819 29 H 0.182 0.818 30 H 0.168 0.832 31 H 0.149 0.851 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.244 -1.670 -0.117 7.435 hybrid contribution -1.551 -1.306 -0.232 2.041 sum 5.693 -2.976 -0.349 6.434 Atomic orbital electron populations 1.19688 0.86445 0.99831 1.01856 1.25060 0.98650 0.89644 1.06564 1.72974 0.90723 1.25986 1.21868 1.84026 1.19735 1.24980 1.71140 1.23982 0.96843 0.82270 1.25811 1.19692 0.87028 0.99852 0.91270 0.86559 1.22314 0.90879 1.03199 0.99103 1.30471 1.04360 1.13570 1.20411 1.08467 0.77729 0.74033 0.80619 1.93543 1.72857 1.56335 1.74394 1.93549 1.77172 1.39666 1.87013 1.30694 1.21354 1.11743 1.07510 1.20014 0.89121 0.94453 0.96194 1.18786 1.07042 0.90627 1.34329 0.89309 1.26453 0.95664 1.02551 0.92424 1.69992 1.16433 1.38777 1.20304 0.85357 0.78154 0.77757 0.79133 1.19084 1.19866 1.18278 0.91090 0.92306 0.93171 0.89730 0.87740 0.81892 0.81770 0.83242 0.85143 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.92 8.55 71.24 0.61 -0.31 16 2 C -0.04 -2.00 7.23 45.33 0.33 -1.67 16 3 N -0.41 -20.36 11.96 -43.73 -0.52 -20.88 16 4 O 0.07 3.24 10.98 74.67 0.82 4.06 16 5 C -0.23 -9.83 6.04 26.03 0.16 -9.67 16 6 C 0.04 1.32 3.04 -10.69 -0.03 1.29 16 7 H 0.12 3.45 7.64 -2.39 -0.02 3.44 16 8 C -0.12 -2.90 5.79 31.59 0.18 -2.72 16 9 C -0.56 -9.72 7.31 72.68 0.53 -9.19 16 10 S 2.40 57.49 6.09 -56.49 -0.34 57.14 16 11 O -0.97 -28.46 18.15 -127.47 -2.31 -30.77 16 12 O -0.98 -30.24 18.15 -127.47 -2.31 -32.55 16 13 C -0.58 -15.59 6.76 72.54 0.49 -15.10 16 14 C 0.01 0.35 5.89 -19.66 -0.12 0.23 16 15 C -0.48 -22.92 9.03 23.43 0.21 -22.71 16 16 H 0.09 3.99 7.74 -2.91 -0.02 3.97 16 17 C 0.04 1.99 4.71 85.17 0.40 2.39 16 18 N -0.83 -39.37 9.79 21.79 0.21 -39.15 16 19 Si 0.97 35.07 29.59 68.60 2.03 37.10 16 20 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 21 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 23 H 0.07 3.22 7.24 -2.39 -0.02 3.21 16 24 H 0.06 2.63 7.22 -2.39 -0.02 2.62 16 25 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 26 H 0.08 2.19 8.11 -2.39 -0.02 2.17 16 27 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.16 2.06 8.14 -2.39 -0.02 2.05 16 29 H 0.16 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.15 3.55 8.14 -2.39 -0.02 3.53 16 31 H 0.13 3.74 7.82 -2.39 -0.02 3.72 16 32 H 0.29 12.47 8.30 -92.71 -0.77 11.70 16 Total: -1.00 -66.89 285.15 1.47 -65.42 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.14 Total: 17.08 kcal Atomic # 6 Polarization: -60.21 SS G_CDS: 2.76 Total: -57.44 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.31 Total: -60.03 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: -3.81 Total: -59.27 kcal Atomic # 14 Polarization: 35.07 SS G_CDS: 2.03 Total: 37.10 kcal Atomic # 16 Polarization: 57.49 SS G_CDS: -0.34 Total: 57.14 kcal Total: -66.89 1.47 -65.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261238824.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.929 kcal (2) G-P(sol) polarization free energy of solvation -66.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds