Wall clock time and date at job start Mon Mar 30 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00126 * 2 1 4 4 H 1.48501 * 109.47564 * 239.99865 * 3 2 1 5 5 H 1.48507 * 109.47348 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47612 * 119.99816 * 3 2 1 7 7 C 1.37884 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99623 * 174.00614 * 7 2 1 9 9 C 1.50699 * 120.00318 * 354.00489 * 7 2 1 10 10 C 1.53002 * 115.55818 * 86.86701 * 9 7 2 11 11 S 1.81391 * 109.47323 * 40.36601 * 10 9 7 12 12 O 1.42098 * 109.47328 * 290.92420 * 11 10 9 13 13 C 1.81394 * 103.00113 * 174.53536 * 11 10 9 14 14 C 1.50707 * 109.47661 * 180.02562 * 13 11 10 15 15 O 1.21284 * 119.99558 * 359.97438 * 14 13 11 16 16 N 1.34769 * 120.00153 * 179.97438 * 14 13 11 17 17 C 1.46507 * 119.99888 * 179.97438 * 16 14 13 18 18 C 1.52993 * 117.50088 * 223.62208 * 17 16 14 19 19 C 1.52998 * 60.00197 * 252.51054 * 18 17 16 20 20 C 1.53000 * 117.49554 * 301.17734 * 9 7 2 21 21 C 1.52998 * 60.02954 * 252.50073 * 20 9 7 22 22 H 0.96991 * 119.99854 * 5.02585 * 1 2 3 23 23 H 1.08993 * 109.46708 * 160.36925 * 10 9 7 24 24 H 1.09001 * 109.46672 * 280.36466 * 10 9 7 25 25 H 1.09004 * 109.47016 * 300.00343 * 13 11 10 26 26 H 1.08998 * 109.47095 * 60.00003 * 13 11 10 27 27 H 0.97004 * 120.00535 * 359.97438 * 16 14 13 28 28 H 1.09000 * 115.54653 * 9.33491 * 17 16 14 29 29 H 1.09006 * 117.50102 * 0.02562 * 18 17 16 30 30 H 1.09000 * 117.49910 * 145.01966 * 18 17 16 31 31 H 1.08994 * 117.49674 * 252.51115 * 19 18 17 32 32 H 1.09000 * 117.51786 * 107.47849 * 19 18 17 33 33 H 1.08993 * 117.49827 * 0.02562 * 20 9 7 34 34 H 1.09003 * 117.49011 * 144.99720 * 20 9 7 35 35 H 1.08996 * 117.49917 * 107.51175 * 21 20 9 36 36 H 1.09002 * 117.49717 * 252.52327 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0802 -1.1967 -0.0971 9 6 1.2572 -2.4956 0.1374 10 6 0.7401 -3.1004 -1.1694 11 16 1.9910 -2.8961 -2.4670 12 8 2.1029 -1.5204 -2.8047 13 6 1.2803 -3.8063 -3.8659 14 6 2.2179 -3.7301 -5.0433 15 8 3.2625 -3.1212 -4.9482 16 7 1.8955 -4.3385 -6.2019 17 6 2.8067 -4.2639 -7.3467 18 6 2.1934 -3.9888 -8.7210 19 6 2.7274 -5.3831 -8.3868 20 6 0.4052 -2.6922 1.3929 21 6 1.7168 -3.4631 1.2309 22 1 -0.4849 0.8368 -0.0736 23 1 0.5378 -4.1615 -1.0235 24 1 -0.1777 -2.5930 -1.4663 25 1 1.1349 -4.8493 -3.5845 26 1 0.3206 -3.3657 -4.1360 27 1 1.0602 -4.8257 -6.2779 28 1 3.7886 -3.8385 -7.1390 29 1 1.1119 -3.8628 -8.7735 30 1 2.7717 -3.3821 -9.4179 31 1 3.6569 -5.6937 -8.8638 32 1 1.9974 -6.1751 -8.2193 33 1 0.3848 -1.8801 2.1196 34 1 -0.5241 -3.2523 1.2877 35 1 2.5596 -3.1585 1.8513 36 1 1.6504 -4.5303 1.0189 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304206762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:13 Heat of formation + Delta-G solvation = -18.692560 kcal Electronic energy + Delta-G solvation = -18569.069947 eV Core-core repulsion = 15568.019422 eV Total energy + Delta-G solvation = -3001.050525 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.64444 -37.14920 -36.47969 -34.52012 -32.93934 -31.82528 -29.39885 -27.59151 -25.21426 -22.65390 -22.34061 -21.07172 -20.73583 -19.18958 -17.17075 -16.92463 -16.32231 -15.75368 -15.30319 -14.83012 -14.56175 -14.22914 -13.87485 -13.68369 -13.24187 -12.94639 -12.63089 -12.59569 -12.12427 -11.85612 -11.54566 -11.43894 -10.87566 -10.84391 -10.75837 -10.66811 -10.41172 -10.12371 -9.89299 -9.64429 -9.29293 -8.86484 -8.77181 -8.32355 -8.07992 -7.14529 -5.95289 -4.03470 2.27723 2.65258 3.15385 3.43911 3.46415 3.56277 3.69975 3.70662 4.54427 4.56139 4.69613 4.75276 4.76618 4.97648 5.32066 5.33938 5.38643 5.49383 5.55884 5.65149 5.77043 5.79845 6.08315 6.23678 6.40894 6.52239 6.53969 6.77302 6.88957 7.14118 7.39699 7.45836 7.55276 7.97331 8.24126 8.40654 8.97850 9.68385 11.13114 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.026320 B = 0.004869 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.587043 B = 5748.795062 C = 6413.974875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.091 3.909 3 Si 0.887 3.113 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.062 3.938 10 C -0.405 4.405 11 S 1.311 4.689 12 O -0.793 6.793 13 C -0.522 4.522 14 C 0.548 3.452 15 O -0.526 6.526 16 N -0.707 5.707 17 C 0.082 3.918 18 C -0.197 4.197 19 C -0.190 4.190 20 C -0.152 4.152 21 C -0.210 4.210 22 H 0.259 0.741 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.133 0.867 26 H 0.105 0.895 27 H 0.401 0.599 28 H 0.140 0.860 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 -14.192 -11.476 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.114 4.114 3 Si 0.715 3.285 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.060 3.940 10 C -0.543 4.543 11 S 1.502 4.498 12 O -0.788 6.788 13 C -0.653 4.653 14 C 0.335 3.665 15 O -0.402 6.402 16 N -0.358 5.358 17 C -0.025 4.025 18 C -0.236 4.236 19 C -0.229 4.229 20 C -0.191 4.191 21 C -0.247 4.247 22 H 0.069 0.931 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.151 0.849 26 H 0.123 0.877 27 H 0.235 0.765 28 H 0.157 0.843 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.448 -13.139 -11.365 17.711 hybrid contribution -2.481 1.435 -0.782 2.971 sum 0.967 -11.704 -12.147 16.896 Atomic orbital electron populations 1.69967 1.06157 1.26832 1.48587 1.24831 0.94597 0.99031 0.92913 0.86711 0.79995 0.82975 0.78856 1.19466 1.21536 1.20198 1.20386 0.93063 0.88778 1.52642 0.91759 1.18212 0.98152 0.93466 0.84134 1.27296 1.13054 1.02782 1.11174 1.71134 0.99807 0.95178 0.83655 1.93139 1.76124 1.30462 1.79071 1.28644 1.07961 1.14907 1.13813 1.19860 0.86458 0.77342 0.82831 1.90754 1.25384 1.40929 1.83115 1.45456 1.23164 1.55619 1.11538 1.21625 0.96263 1.02685 0.81906 1.23421 1.01556 0.99097 0.99546 1.23363 1.03735 0.92423 1.03338 1.22487 0.91802 1.01011 1.03828 1.23137 0.98964 0.95583 1.07005 0.93144 0.90100 0.89999 0.84887 0.87650 0.76516 0.84286 0.88633 0.88032 0.87899 0.88554 0.90088 0.92107 0.90141 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.24 12.84 55.43 0.71 -25.53 16 2 C 0.09 2.65 5.38 -17.82 -0.10 2.55 16 3 Si 0.89 23.19 29.54 -169.99 -5.02 18.17 16 4 H -0.27 -7.31 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.51 -14.19 6.60 -34.44 -0.23 -14.42 16 8 H 0.06 1.79 7.82 -52.48 -0.41 1.38 16 9 C 0.06 1.49 1.68 -155.62 -0.26 1.23 16 10 C -0.40 -8.38 6.03 37.16 0.22 -8.16 16 11 S 1.31 25.44 11.75 -107.50 -1.26 24.17 16 12 O -0.79 -21.28 16.61 -36.27 -0.60 -21.88 16 13 C -0.52 -7.49 6.41 36.01 0.23 -7.26 16 14 C 0.55 8.55 7.85 -10.99 -0.09 8.46 16 15 O -0.53 -10.34 15.27 4.52 0.07 -10.27 16 16 N -0.71 -8.21 5.57 -53.80 -0.30 -8.51 16 17 C 0.08 0.88 6.43 -67.93 -0.44 0.44 16 18 C -0.20 -1.70 10.46 -26.74 -0.28 -1.98 16 19 C -0.19 -1.43 10.46 -26.73 -0.28 -1.71 16 20 C -0.15 -3.53 9.34 -26.73 -0.25 -3.78 16 21 C -0.21 -4.27 9.89 -26.70 -0.26 -4.54 16 22 H 0.26 7.50 8.32 -40.82 -0.34 7.16 16 23 H 0.08 1.32 7.95 -51.93 -0.41 0.90 16 24 H 0.08 1.92 8.14 -51.92 -0.42 1.50 16 25 H 0.13 1.30 8.14 -51.92 -0.42 0.88 16 26 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 27 H 0.40 3.43 8.83 -40.82 -0.36 3.07 16 28 H 0.14 1.70 7.40 -51.93 -0.38 1.31 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -37.08 323.24 -8.61 -45.69 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.35 Total: 2.46 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: -1.73 Total: -29.18 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.41 Total: -34.04 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.53 Total: -32.15 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Atomic # 16 Polarization: 25.44 SS G_CDS: -1.26 Total: 24.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -37.08 -8.61 -45.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304206762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.001 kcal (2) G-P(sol) polarization free energy of solvation -37.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds