Wall clock time and date at job start Mon Mar 30 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00126 * 2 1 4 4 H 1.48501 * 109.47564 * 239.99865 * 3 2 1 5 5 H 1.48507 * 109.47348 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47612 * 119.99816 * 3 2 1 7 7 C 1.37884 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99623 * 174.00614 * 7 2 1 9 9 C 1.50699 * 120.00318 * 354.00489 * 7 2 1 10 10 C 1.53002 * 115.55818 * 86.86701 * 9 7 2 11 11 S 1.81391 * 109.47323 * 40.36601 * 10 9 7 12 12 O 1.42098 * 109.47328 * 290.92420 * 11 10 9 13 13 C 1.81394 * 103.00113 * 174.53536 * 11 10 9 14 14 C 1.50707 * 109.47661 * 180.02562 * 13 11 10 15 15 O 1.21284 * 119.99558 * 359.97438 * 14 13 11 16 16 N 1.34769 * 120.00153 * 179.97438 * 14 13 11 17 17 C 1.46507 * 119.99888 * 179.97438 * 16 14 13 18 18 C 1.52993 * 117.50088 * 223.62208 * 17 16 14 19 19 C 1.52998 * 60.00197 * 252.51054 * 18 17 16 20 20 C 1.53000 * 117.49554 * 301.17734 * 9 7 2 21 21 C 1.52998 * 60.02954 * 252.50073 * 20 9 7 22 22 H 0.96991 * 119.99854 * 5.02585 * 1 2 3 23 23 H 1.08993 * 109.46708 * 160.36925 * 10 9 7 24 24 H 1.09001 * 109.46672 * 280.36466 * 10 9 7 25 25 H 1.09004 * 109.47016 * 300.00343 * 13 11 10 26 26 H 1.08998 * 109.47095 * 60.00003 * 13 11 10 27 27 H 0.97004 * 120.00535 * 359.97438 * 16 14 13 28 28 H 1.09000 * 115.54653 * 9.33491 * 17 16 14 29 29 H 1.09006 * 117.50102 * 0.02562 * 18 17 16 30 30 H 1.09000 * 117.49910 * 145.01966 * 18 17 16 31 31 H 1.08994 * 117.49674 * 252.51115 * 19 18 17 32 32 H 1.09000 * 117.51786 * 107.47849 * 19 18 17 33 33 H 1.08993 * 117.49827 * 0.02562 * 20 9 7 34 34 H 1.09003 * 117.49011 * 144.99720 * 20 9 7 35 35 H 1.08996 * 117.49917 * 107.51175 * 21 20 9 36 36 H 1.09002 * 117.49717 * 252.52327 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0802 -1.1967 -0.0971 9 6 1.2572 -2.4956 0.1374 10 6 0.7401 -3.1004 -1.1694 11 16 1.9910 -2.8961 -2.4670 12 8 2.1029 -1.5204 -2.8047 13 6 1.2803 -3.8063 -3.8659 14 6 2.2179 -3.7301 -5.0433 15 8 3.2625 -3.1212 -4.9482 16 7 1.8955 -4.3385 -6.2019 17 6 2.8067 -4.2639 -7.3467 18 6 2.1934 -3.9888 -8.7210 19 6 2.7274 -5.3831 -8.3868 20 6 0.4052 -2.6922 1.3929 21 6 1.7168 -3.4631 1.2309 22 1 -0.4849 0.8368 -0.0736 23 1 0.5378 -4.1615 -1.0235 24 1 -0.1777 -2.5930 -1.4663 25 1 1.1349 -4.8493 -3.5845 26 1 0.3206 -3.3657 -4.1360 27 1 1.0602 -4.8257 -6.2779 28 1 3.7886 -3.8385 -7.1390 29 1 1.1119 -3.8628 -8.7735 30 1 2.7717 -3.3821 -9.4179 31 1 3.6569 -5.6937 -8.8638 32 1 1.9974 -6.1751 -8.2193 33 1 0.3848 -1.8801 2.1196 34 1 -0.5241 -3.2523 1.2877 35 1 2.5596 -3.1585 1.8513 36 1 1.6504 -4.5303 1.0189 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304206762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:12 Heat of formation + Delta-G solvation = -46.936396 kcal Electronic energy + Delta-G solvation = -18570.294692 eV Core-core repulsion = 15568.019422 eV Total energy + Delta-G solvation = -3002.275270 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.76769 -38.29306 -38.03509 -36.30603 -34.00402 -33.95349 -30.59760 -29.26049 -27.30843 -23.31639 -23.23298 -22.78619 -21.82619 -21.05622 -18.60103 -18.22186 -17.66765 -17.35474 -16.66828 -16.49679 -15.91675 -15.77773 -15.24466 -15.14595 -14.76063 -14.46538 -14.19400 -13.68238 -13.53169 -13.45170 -12.92300 -12.89901 -12.51339 -12.44629 -12.38706 -12.33619 -11.86342 -11.50476 -11.45551 -11.20634 -11.03744 -10.72407 -10.30692 -9.85241 -9.77321 -8.77404 -8.14003 -6.21508 0.81182 1.29277 1.34764 1.41431 1.49075 2.13294 2.24337 2.42387 2.97917 3.18400 3.35480 3.58779 3.75745 3.84266 4.05851 4.07725 4.30354 4.39668 4.58772 4.60541 4.75431 4.79109 4.83319 4.90329 5.01702 5.11843 5.17559 5.20339 5.38629 5.49485 5.69374 5.76779 5.83908 6.36407 6.42797 6.85015 7.16864 7.50191 8.93407 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.026320 B = 0.004869 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.587043 B = 5748.795062 C = 6413.974875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.041 3.959 3 Si 0.923 3.077 4 H -0.290 1.290 5 H -0.286 1.286 6 H -0.258 1.258 7 C -0.507 4.507 8 H 0.052 0.948 9 C 0.022 3.978 10 C -0.396 4.396 11 S 1.329 4.671 12 O -0.885 6.885 13 C -0.501 4.501 14 C 0.539 3.461 15 O -0.578 6.578 16 N -0.686 5.686 17 C 0.043 3.957 18 C -0.194 4.194 19 C -0.158 4.158 20 C -0.166 4.166 21 C -0.170 4.170 22 H 0.253 0.747 23 H 0.136 0.864 24 H 0.047 0.953 25 H 0.194 0.806 26 H 0.111 0.889 27 H 0.418 0.582 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 -17.857 -12.468 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.160 4.160 3 Si 0.750 3.250 4 H -0.217 1.217 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.020 3.980 10 C -0.534 4.534 11 S 1.526 4.474 12 O -0.881 6.881 13 C -0.636 4.636 14 C 0.326 3.674 15 O -0.458 6.458 16 N -0.338 5.338 17 C -0.063 4.063 18 C -0.233 4.233 19 C -0.196 4.196 20 C -0.205 4.205 21 C -0.207 4.207 22 H 0.062 0.938 23 H 0.154 0.846 24 H 0.066 0.934 25 H 0.211 0.789 26 H 0.129 0.871 27 H 0.256 0.744 28 H 0.133 0.867 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.007 -16.802 -12.329 21.056 hybrid contribution -2.330 2.397 -0.634 3.403 sum 0.676 -14.405 -12.963 19.391 Atomic orbital electron populations 1.70046 1.06836 1.26649 1.51076 1.25414 0.95271 1.01425 0.93873 0.86155 0.79210 0.81160 0.78478 1.21656 1.21107 1.18235 1.20725 0.92866 0.90824 1.50133 0.92945 1.18359 0.99641 0.93676 0.86274 1.27166 1.11084 1.05401 1.09703 1.69835 0.99708 0.93032 0.84861 1.93041 1.78941 1.34404 1.81667 1.28270 1.07166 1.17133 1.11077 1.20047 0.85926 0.77255 0.84142 1.90752 1.27634 1.43402 1.84047 1.45236 1.23768 1.54217 1.10533 1.21714 0.95670 1.06454 0.82486 1.23505 1.01941 1.00322 0.97521 1.23461 1.04564 0.91874 0.99700 1.22412 0.94003 1.01329 1.02745 1.23219 0.96770 0.97420 1.03297 0.93789 0.84578 0.93424 0.78913 0.87052 0.74393 0.86711 0.87990 0.87632 0.86536 0.86596 0.93355 0.90566 0.90246 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.00 12.84 21.45 0.28 -55.73 16 2 C 0.04 2.44 5.38 84.66 0.46 2.89 16 3 Si 0.92 49.12 29.54 68.60 2.03 51.14 16 4 H -0.29 -16.28 7.11 99.48 0.71 -15.57 16 5 H -0.29 -14.82 7.11 99.48 0.71 -14.12 16 6 H -0.26 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.51 -28.73 6.60 25.60 0.17 -28.56 16 8 H 0.05 3.00 7.82 -2.91 -0.02 2.98 16 9 C 0.02 1.03 1.68 -52.90 -0.09 0.94 16 10 C -0.40 -15.59 6.03 71.98 0.43 -15.16 16 11 S 1.33 50.72 11.75 -56.49 -0.66 50.06 16 12 O -0.89 -49.46 16.61 -147.99 -2.46 -51.91 16 13 C -0.50 -12.89 6.41 71.24 0.46 -12.43 16 14 C 0.54 16.04 7.85 87.66 0.69 16.72 16 15 O -0.58 -23.12 15.27 -2.05 -0.03 -23.15 16 16 N -0.69 -14.30 5.57 -442.53 -2.46 -16.76 16 17 C 0.04 0.85 6.43 44.99 0.29 1.14 16 18 C -0.19 -2.90 10.46 30.59 0.32 -2.58 16 19 C -0.16 -1.84 10.46 30.59 0.32 -1.52 16 20 C -0.17 -7.50 9.34 30.59 0.29 -7.22 16 21 C -0.17 -6.37 9.89 30.62 0.30 -6.07 16 22 H 0.25 15.27 8.32 -92.71 -0.77 14.50 16 23 H 0.14 3.72 7.95 -2.39 -0.02 3.70 16 24 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.19 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.11 2.88 8.14 -2.39 -0.02 2.87 16 27 H 0.42 5.55 8.83 -92.71 -0.82 4.73 16 28 H 0.11 2.86 7.40 -2.39 -0.02 2.84 16 29 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.12 0.94 8.14 -2.39 -0.02 0.93 16 33 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.12 3.29 8.09 -2.39 -0.02 3.27 16 Total: -1.00 -87.47 323.24 0.58 -86.89 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.26 Total: 11.30 kcal Atomic # 6 Polarization: -55.46 SS G_CDS: 3.63 Total: -51.83 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -2.19 Total: -72.49 kcal Atomic # 8 Polarization: -72.58 SS G_CDS: -2.49 Total: -75.07 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.03 Total: 51.14 kcal Atomic # 16 Polarization: 50.72 SS G_CDS: -0.66 Total: 50.06 kcal Total: -87.47 0.58 -86.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304206762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.956 kcal (2) G-P(sol) polarization free energy of solvation -87.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds