Wall clock time and date at job start Mon Mar 30 2020 05:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47061 * 2 1 4 4 C 1.46903 * 110.99888 * 195.73469 * 3 2 1 5 5 C 1.50695 * 109.47037 * 66.04635 * 4 3 2 6 6 H 1.08005 * 119.99883 * 359.72492 * 5 4 3 7 7 C 1.37881 * 120.00280 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99486 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00297 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46937 * 59.99817 * 9 7 5 11 11 H 1.48498 * 109.47115 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47152 * 299.99747 * 9 7 5 13 13 C 1.37715 * 111.00104 * 71.78380 * 3 2 1 14 14 C 1.37803 * 119.80006 * 60.76429 * 13 3 2 15 15 C 1.40369 * 118.99630 * 179.97438 * 14 13 3 16 16 O 1.22359 * 120.65075 * 179.97438 * 15 14 13 17 17 C 1.46377 * 118.70410 * 0.02562 * 15 14 13 18 18 Cl 1.73595 * 120.23270 * 179.97438 * 17 15 14 19 19 N 1.30425 * 119.53975 * 359.97438 * 17 15 14 20 20 N 1.35739 * 119.79335 * 240.49326 * 13 3 2 21 21 C 1.46498 * 119.30748 * 0.02562 * 20 13 3 22 22 H 1.09000 * 109.47391 * 303.14630 * 1 2 3 23 23 H 1.09004 * 109.47039 * 63.14575 * 1 2 3 24 24 H 1.08994 * 109.47551 * 183.14533 * 1 2 3 25 25 H 1.08998 * 109.47314 * 239.99838 * 2 1 3 26 26 H 1.09001 * 109.47222 * 119.99943 * 2 1 3 27 27 H 1.08998 * 109.47021 * 306.04395 * 4 3 2 28 28 H 1.09006 * 109.47241 * 186.04570 * 4 3 2 29 29 H 0.96997 * 119.99529 * 180.02562 * 8 7 5 30 30 H 1.08007 * 120.49948 * 359.96123 * 14 13 3 31 31 H 1.08995 * 109.47251 * 84.57715 * 21 20 13 32 32 H 1.09005 * 109.47148 * 204.57244 * 21 20 13 33 33 H 1.08996 * 109.47503 * 324.56810 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4397 1.4413 -0.3719 5 6 3.6014 1.0039 -1.8049 6 1 2.7363 0.7089 -2.3803 7 6 4.8544 0.9743 -2.3796 8 7 5.9084 1.3284 -1.6772 9 14 5.0548 0.4314 -4.1556 10 1 4.2756 1.3345 -5.0402 11 1 6.4903 0.4884 -4.5316 12 1 4.5579 -0.9597 -4.3071 13 6 1.8052 1.9843 1.2212 14 6 2.3897 1.4597 2.3536 15 6 2.1602 2.0843 3.5895 16 8 2.6637 1.6438 4.6141 17 6 1.3060 3.2723 3.6289 18 17 0.9951 4.0757 5.1361 19 7 0.7800 3.7231 2.5239 20 7 1.0239 3.0914 1.3014 21 6 0.4189 3.6319 0.0815 22 1 -0.3634 0.5619 0.8604 23 1 -0.3633 0.4642 -0.9169 24 1 -0.3634 -1.0260 0.0564 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 4.0118 0.7784 0.2771 28 1 3.8043 2.4625 -0.2604 29 1 6.7898 1.3080 -2.0815 30 1 3.0147 0.5810 2.2910 31 1 -0.5118 3.1044 -0.1269 32 1 0.2121 4.6934 0.2181 33 1 1.1062 3.5003 -0.7541 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308741751.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:19 Heat of formation + Delta-G solvation = 21.728561 kcal Electronic energy + Delta-G solvation = -18969.890514 eV Core-core repulsion = 15865.008730 eV Total energy + Delta-G solvation = -3104.881783 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.14292 -39.69854 -38.46783 -37.95104 -34.94717 -34.24792 -32.76950 -31.53260 -28.70456 -27.86199 -25.70824 -24.51582 -24.33453 -22.08036 -19.67657 -19.01789 -18.45807 -17.73144 -17.39549 -16.61537 -16.47720 -15.81634 -15.45526 -15.13969 -15.10654 -14.86478 -14.32933 -14.07690 -13.81994 -13.65129 -13.06654 -12.98257 -12.86309 -12.78505 -12.58562 -12.54217 -12.43526 -12.08063 -11.94596 -11.51579 -11.09439 -10.79042 -10.62742 -9.71455 -9.27057 -8.23053 -6.34682 -0.45674 -0.25360 -0.13451 1.15261 1.47932 1.49006 1.57094 2.07680 2.39178 2.71914 2.96641 3.12663 3.24768 3.89241 4.13931 4.29199 4.40120 4.49883 4.51415 4.58878 4.70649 4.82118 4.87777 4.93393 5.05134 5.14607 5.18663 5.33303 5.60007 5.80451 5.89116 6.10293 6.41117 6.44556 6.78792 7.35826 8.87936 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.026527 B = 0.005158 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.272931 B = 5427.445089 C = 5685.881763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.059 3.941 3 N -0.508 5.508 4 C 0.222 3.778 5 C -0.522 4.522 6 H 0.081 0.919 7 C 0.007 3.993 8 N -0.934 5.934 9 Si 0.971 3.029 10 H -0.264 1.264 11 H -0.292 1.292 12 H -0.265 1.265 13 C 0.406 3.594 14 C -0.372 4.372 15 C 0.379 3.621 16 O -0.531 6.531 17 C 0.079 3.921 18 Cl 0.039 6.961 19 N -0.185 5.185 20 N -0.356 5.356 21 C 0.090 3.910 22 H 0.039 0.961 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.035 0.965 27 H -0.018 1.018 28 H 0.006 0.994 29 H 0.265 0.735 30 H 0.144 0.856 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.770 3.231 2.570 14.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.066 4.066 3 N -0.233 5.233 4 C 0.099 3.901 5 C -0.560 4.560 6 H 0.099 0.901 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.796 3.204 10 H -0.189 1.189 11 H -0.218 1.218 12 H -0.190 1.190 13 C 0.193 3.807 14 C -0.402 4.402 15 C 0.268 3.732 16 O -0.414 6.414 17 C -0.129 4.129 18 Cl 0.067 6.933 19 N -0.004 5.004 20 N -0.150 5.150 21 C -0.049 4.049 22 H 0.058 0.942 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.113 0.887 26 H 0.053 0.947 27 H 0.000 1.000 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.162 0.838 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.279 4.148 2.403 15.062 hybrid contribution 1.682 -1.064 0.293 2.011 sum -12.598 3.084 2.696 13.247 Atomic orbital electron populations 1.21778 0.92715 1.02969 1.02045 1.22308 0.97004 0.84874 1.02433 1.58937 1.22473 1.19766 1.22174 1.19503 0.78888 0.95497 0.96233 1.21308 0.93598 1.44753 0.96330 0.90078 1.25884 0.95395 0.95195 1.02701 1.70093 0.99472 1.48832 1.38936 0.85402 0.76741 0.79328 0.78977 1.18893 1.21827 1.18952 1.19642 0.84652 0.84993 0.91460 1.22522 1.15550 1.10104 0.92051 1.18572 0.80851 0.83636 0.90128 1.90825 1.49040 1.64956 1.36615 1.26678 0.99547 0.96636 0.90033 1.98414 1.94085 1.77789 1.22991 1.74905 1.16650 1.17994 0.90878 1.48118 1.40228 1.21058 1.05558 1.22434 1.00003 1.01614 0.80851 0.94182 0.90654 0.89998 0.88676 0.94672 1.00014 0.97613 0.92612 0.83833 0.88092 0.87038 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 10.01 71.98 0.72 -2.51 16 2 C 0.06 1.88 5.42 86.30 0.47 2.35 16 3 N -0.51 -18.36 3.17 -705.76 -2.24 -20.60 16 4 C 0.22 10.45 4.32 85.55 0.37 10.82 16 5 C -0.52 -25.56 8.29 25.60 0.21 -25.35 16 6 H 0.08 3.71 7.24 -2.91 -0.02 3.68 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -52.75 13.29 21.45 0.28 -52.46 16 9 Si 0.97 40.13 29.54 68.60 2.03 42.16 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 13 C 0.41 14.14 4.54 132.15 0.60 14.74 16 14 C -0.37 -14.37 8.42 22.69 0.19 -14.18 16 15 C 0.38 14.67 6.90 24.91 0.17 14.84 16 16 O -0.53 -23.15 17.54 -6.50 -0.11 -23.27 16 17 C 0.08 2.56 7.61 87.02 0.66 3.23 16 18 Cl 0.04 1.08 28.87 -2.72 -0.08 1.00 16 19 N -0.19 -5.50 11.49 -45.63 -0.52 -6.02 16 20 N -0.36 -10.51 3.93 -366.18 -1.44 -11.95 16 21 C 0.09 1.92 10.56 127.77 1.35 3.27 16 22 H 0.04 0.96 7.50 -2.39 -0.02 0.94 16 23 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 24 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 25 H 0.09 3.23 6.58 -2.39 -0.02 3.21 16 26 H 0.03 1.16 6.77 -2.39 -0.02 1.15 16 27 H -0.02 -0.94 7.56 -2.39 -0.02 -0.96 16 28 H 0.01 0.30 8.05 -2.38 -0.02 0.28 16 29 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.14 5.92 7.05 -2.91 -0.02 5.90 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.10 2.44 7.44 -2.39 -0.02 2.42 16 Total: -1.00 -61.50 299.74 4.25 -57.25 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.13 Total: 5.83 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 5.21 Total: 8.05 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -3.92 Total: -91.03 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.11 Total: -23.27 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Atomic # 17 Polarization: 1.08 SS G_CDS: -0.08 Total: 1.00 kcal Total: -61.50 4.25 -57.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308741751.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.980 kcal (2) G-P(sol) polarization free energy of solvation -61.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds