Wall clock time and date at job start Mon Mar 30 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47402 * 2 1 4 4 C 1.50705 * 109.46746 * 240.00001 * 2 1 3 5 5 H 1.08001 * 119.99620 * 240.00780 * 4 2 1 6 6 C 1.37871 * 120.00192 * 59.99975 * 4 2 1 7 7 N 1.31517 * 119.99886 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00220 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47204 * 59.99900 * 8 6 4 10 10 H 1.48497 * 109.47311 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46927 * 299.99831 * 8 6 4 12 12 N 1.46900 * 109.47174 * 120.00217 * 2 1 3 13 13 C 1.46900 * 111.00062 * 180.45786 * 12 2 1 14 14 C 1.37714 * 110.99560 * 304.41179 * 12 2 1 15 15 C 1.37805 * 119.79757 * 298.34381 * 14 12 2 16 16 C 1.40383 * 118.99351 * 180.02562 * 15 14 12 17 17 O 1.22351 * 120.64849 * 179.97438 * 16 15 14 18 18 C 1.46384 * 118.69836 * 359.97438 * 16 15 14 19 19 Cl 1.73603 * 120.22391 * 180.02562 * 18 16 15 20 20 N 1.30413 * 119.54564 * 0.02562 * 18 16 15 21 21 N 1.35742 * 119.79227 * 118.34550 * 14 12 2 22 22 C 1.46493 * 119.31026 * 0.27877 * 21 14 12 23 23 H 1.08996 * 109.47862 * 184.48400 * 1 2 3 24 24 H 1.09003 * 109.46859 * 304.48532 * 1 2 3 25 25 H 1.09000 * 109.47169 * 64.47488 * 1 2 3 26 26 H 0.97005 * 119.99849 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.46923 * 178.16389 * 13 12 2 28 28 H 1.08994 * 109.46760 * 298.16456 * 13 12 2 29 29 H 1.08999 * 109.46824 * 58.16193 * 13 12 2 30 30 H 1.07993 * 120.50521 * 0.02562 * 15 14 12 31 31 H 1.09007 * 109.46782 * 266.77604 * 22 21 14 32 32 H 1.08996 * 109.47412 * 26.77645 * 22 21 14 33 33 H 1.09004 * 109.47572 * 146.78227 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3211 -1.1204 -4.0080 9 1 1.8256 -2.5202 -4.0077 10 1 1.8267 -0.4200 -5.2205 11 1 3.8062 -1.1210 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 3.4881 -0.7027 1.2388 14 6 1.4991 -0.1277 2.3424 15 6 1.7738 1.1891 2.6419 16 6 1.2349 1.7476 3.8116 17 8 1.4597 2.9134 4.1071 18 6 0.3988 0.9078 4.6710 19 17 -0.2884 1.5581 6.1265 20 7 0.1736 -0.3322 4.3356 21 7 0.7186 -0.8715 3.1671 22 6 0.4472 -2.2707 2.8286 23 1 -0.3635 -1.0244 0.0803 24 1 -0.3633 0.5819 0.8471 25 1 -0.3633 0.4428 -0.9274 26 1 0.7094 1.1618 -3.4844 27 1 3.8236 -1.1926 2.1528 28 1 3.8710 -1.2448 0.3743 29 1 3.8591 0.3220 1.2186 30 1 2.3943 1.7824 1.9867 31 1 -0.4841 -2.3342 2.2656 32 1 1.2647 -2.6635 2.2241 33 1 0.3587 -2.8555 3.7442 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308742100.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:13 Heat of formation + Delta-G solvation = 46.146769 kcal Electronic energy + Delta-G solvation = -19194.410743 eV Core-core repulsion = 16090.587813 eV Total energy + Delta-G solvation = -3103.822930 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.71312 -38.19588 -37.03439 -36.65255 -33.45213 -32.80051 -30.79875 -29.51059 -26.82913 -25.99807 -24.83012 -23.89001 -22.42868 -20.19346 -18.23074 -17.66311 -16.50729 -16.23386 -15.81111 -15.11663 -14.90556 -14.15228 -13.99477 -13.75745 -13.49309 -13.29465 -12.65537 -12.50087 -12.41899 -12.14159 -11.71386 -11.48986 -11.33354 -11.24611 -11.10720 -10.93073 -10.53162 -10.48809 -10.32055 -9.70665 -9.37188 -9.27320 -8.66220 -8.03719 -7.80964 -6.23361 -4.31804 0.94825 1.15937 1.25814 2.51030 3.19318 3.25775 3.26282 3.57749 4.12435 4.29872 4.42595 4.63029 5.08852 5.36105 5.42360 5.51083 5.64261 5.80389 5.91153 6.00490 6.19256 6.32169 6.46318 6.50631 6.69346 6.77910 7.00638 7.25875 7.50872 7.58989 7.67329 7.93874 7.98861 8.16475 8.71384 9.34532 10.82899 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032859 B = 0.005190 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.933797 B = 5393.408711 C = 5621.334795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.225 3.775 3 H 0.020 0.980 4 C -0.514 4.514 5 H 0.067 0.933 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.524 5.524 13 C 0.047 3.953 14 C 0.403 3.597 15 C -0.355 4.355 16 C 0.386 3.614 17 O -0.497 6.497 18 C 0.084 3.916 19 Cl 0.014 6.986 20 N -0.202 5.202 21 N -0.364 5.364 22 C 0.098 3.902 23 H 0.035 0.965 24 H 0.005 0.995 25 H 0.098 0.902 26 H 0.266 0.734 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.036 0.964 30 H 0.160 0.840 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.124 -5.447 10.246 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.123 3.877 3 H 0.038 0.962 4 C -0.552 4.552 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.250 5.250 13 C -0.099 4.099 14 C 0.193 3.807 15 C -0.384 4.384 16 C 0.272 3.728 17 O -0.378 6.378 18 C -0.125 4.125 19 Cl 0.042 6.958 20 N -0.021 5.021 21 N -0.159 5.159 22 C -0.043 4.043 23 H 0.054 0.946 24 H 0.024 0.976 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.055 0.945 30 H 0.177 0.823 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.821 -6.081 10.614 12.260 hybrid contribution 0.640 0.873 -1.013 1.482 sum -0.181 -5.208 9.601 10.924 Atomic orbital electron populations 1.21939 0.97295 0.99103 1.01601 1.19543 0.92557 0.92584 0.83049 0.96208 1.20939 1.32323 1.12956 0.89030 0.91444 1.24925 0.94875 0.94963 0.99162 1.69864 1.35927 1.22521 1.24184 0.86474 0.79165 0.79616 0.81681 1.20106 1.21219 1.20121 1.59043 1.09418 1.56160 1.00365 1.22300 0.84066 1.01258 1.02325 1.19678 0.84887 0.88578 0.87597 1.22584 1.16494 0.95476 1.03894 1.18419 0.80490 0.88595 0.85260 1.90845 1.57157 1.16774 1.73064 1.26894 0.99656 0.92681 0.93262 1.98406 1.82749 1.83359 1.31329 1.74759 1.13745 1.13130 1.00441 1.47714 1.40853 1.12379 1.14968 1.22076 1.04459 0.75904 1.01837 0.94574 0.97572 0.88379 0.92434 0.93057 0.88798 0.94531 0.82286 0.90564 0.87102 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.71 37.16 0.32 -2.85 16 2 C 0.23 5.04 1.76 -68.86 -0.12 4.92 16 3 H 0.02 0.51 7.30 -51.93 -0.38 0.13 16 4 C -0.51 -12.35 7.96 -34.44 -0.27 -12.63 16 5 H 0.07 1.57 6.71 -52.49 -0.35 1.22 16 6 C 0.06 1.59 5.29 -17.82 -0.09 1.50 16 7 N -0.89 -23.48 11.30 55.43 0.63 -22.85 16 8 Si 0.90 19.52 29.54 -169.99 -5.02 14.49 16 9 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 10 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 N -0.52 -9.59 3.19 -174.63 -0.56 -10.14 16 13 C 0.05 0.76 8.93 60.06 0.54 1.29 16 14 C 0.40 7.15 3.95 -153.81 -0.61 6.54 16 15 C -0.35 -6.75 8.55 -38.93 -0.33 -7.09 16 16 C 0.39 7.45 6.90 -35.50 -0.24 7.20 16 17 O -0.50 -10.69 17.54 4.59 0.08 -10.60 16 18 C 0.08 1.42 7.61 -14.88 -0.11 1.31 16 19 Cl 0.01 0.20 28.87 -51.86 -1.50 -1.30 16 20 N -0.20 -3.23 11.49 34.23 0.39 -2.84 16 21 N -0.36 -5.75 3.93 -67.09 -0.26 -6.01 16 22 C 0.10 1.20 10.72 59.84 0.64 1.84 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.01 0.12 7.27 -51.93 -0.38 -0.26 16 25 H 0.10 2.47 5.96 -51.93 -0.31 2.16 16 26 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.09 1.54 6.55 -51.93 -0.34 1.20 16 29 H 0.04 0.60 7.38 -51.93 -0.38 0.22 16 30 H 0.16 3.14 7.01 -52.49 -0.37 2.77 16 31 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.11 1.34 7.14 -51.93 -0.37 0.97 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 293.72 15.07 4.43 4.43 Total: -1.00 -27.52 293.72 -5.80 -33.32 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -3.70 Total: -0.53 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.29 Total: 2.04 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.20 Total: -41.85 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -1.50 Total: -1.30 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.52 -5.80 -33.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308742100.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.469 kcal (2) G-P(sol) polarization free energy of solvation -27.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds