Wall clock time and date at job start Mon Mar 30 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47402 * 2 1 4 4 C 1.50705 * 109.46746 * 240.00001 * 2 1 3 5 5 H 1.08001 * 119.99620 * 240.00780 * 4 2 1 6 6 C 1.37871 * 120.00192 * 59.99975 * 4 2 1 7 7 N 1.31517 * 119.99886 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00220 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47204 * 59.99900 * 8 6 4 10 10 H 1.48497 * 109.47311 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46927 * 299.99831 * 8 6 4 12 12 N 1.46900 * 109.47174 * 120.00217 * 2 1 3 13 13 C 1.46900 * 111.00062 * 180.45786 * 12 2 1 14 14 C 1.37714 * 110.99560 * 304.41179 * 12 2 1 15 15 C 1.37805 * 119.79757 * 298.34381 * 14 12 2 16 16 C 1.40383 * 118.99351 * 180.02562 * 15 14 12 17 17 O 1.22351 * 120.64849 * 179.97438 * 16 15 14 18 18 C 1.46384 * 118.69836 * 359.97438 * 16 15 14 19 19 Cl 1.73603 * 120.22391 * 180.02562 * 18 16 15 20 20 N 1.30413 * 119.54564 * 0.02562 * 18 16 15 21 21 N 1.35742 * 119.79227 * 118.34550 * 14 12 2 22 22 C 1.46493 * 119.31026 * 0.27877 * 21 14 12 23 23 H 1.08996 * 109.47862 * 184.48400 * 1 2 3 24 24 H 1.09003 * 109.46859 * 304.48532 * 1 2 3 25 25 H 1.09000 * 109.47169 * 64.47488 * 1 2 3 26 26 H 0.97005 * 119.99849 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.46923 * 178.16389 * 13 12 2 28 28 H 1.08994 * 109.46760 * 298.16456 * 13 12 2 29 29 H 1.08999 * 109.46824 * 58.16193 * 13 12 2 30 30 H 1.07993 * 120.50521 * 0.02562 * 15 14 12 31 31 H 1.09007 * 109.46782 * 266.77604 * 22 21 14 32 32 H 1.08996 * 109.47412 * 26.77645 * 22 21 14 33 33 H 1.09004 * 109.47572 * 146.78227 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3211 -1.1204 -4.0080 9 1 1.8256 -2.5202 -4.0077 10 1 1.8267 -0.4200 -5.2205 11 1 3.8062 -1.1210 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 3.4881 -0.7027 1.2388 14 6 1.4991 -0.1277 2.3424 15 6 1.7738 1.1891 2.6419 16 6 1.2349 1.7476 3.8116 17 8 1.4597 2.9134 4.1071 18 6 0.3988 0.9078 4.6710 19 17 -0.2884 1.5581 6.1265 20 7 0.1736 -0.3322 4.3356 21 7 0.7186 -0.8715 3.1671 22 6 0.4472 -2.2707 2.8286 23 1 -0.3635 -1.0244 0.0803 24 1 -0.3633 0.5819 0.8471 25 1 -0.3633 0.4428 -0.9274 26 1 0.7094 1.1618 -3.4844 27 1 3.8236 -1.1926 2.1528 28 1 3.8710 -1.2448 0.3743 29 1 3.8591 0.3220 1.2186 30 1 2.3943 1.7824 1.9867 31 1 -0.4841 -2.3342 2.2656 32 1 1.2647 -2.6635 2.2241 33 1 0.3587 -2.8555 3.7442 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308742100.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:13 Heat of formation + Delta-G solvation = 29.797751 kcal Electronic energy + Delta-G solvation = -19195.119690 eV Core-core repulsion = 16090.587813 eV Total energy + Delta-G solvation = -3104.531877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.14394 -39.70671 -38.48166 -37.95413 -35.18422 -34.17442 -32.34948 -31.20754 -28.08942 -27.62316 -26.45156 -25.28935 -23.98245 -21.84952 -19.65453 -18.99374 -18.24576 -17.79996 -17.32575 -16.62721 -16.41263 -15.74375 -15.45068 -15.13850 -14.97078 -14.87214 -14.15339 -13.86298 -13.75288 -13.56117 -13.06472 -12.98246 -12.79694 -12.68149 -12.61540 -12.54052 -12.23449 -12.19293 -12.08418 -11.18470 -11.08942 -10.77080 -10.53042 -9.65418 -9.24612 -8.13831 -6.27622 -0.43839 -0.22010 -0.11539 1.17601 1.49948 1.50469 1.57742 2.10087 2.41758 2.76605 3.00038 3.17978 3.27533 3.94429 4.29751 4.43089 4.49939 4.53308 4.59653 4.65579 4.78362 4.85397 4.86146 4.90275 5.08871 5.16356 5.28084 5.62634 5.66863 5.87972 6.06481 6.18593 6.45542 6.48465 6.82674 7.42452 8.92090 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032859 B = 0.005190 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.933797 B = 5393.408711 C = 5621.334795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.233 3.767 3 H -0.016 1.016 4 C -0.516 4.516 5 H 0.078 0.922 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.294 1.294 11 H -0.269 1.269 12 N -0.513 5.513 13 C 0.045 3.955 14 C 0.410 3.590 15 C -0.373 4.373 16 C 0.378 3.622 17 O -0.532 6.532 18 C 0.079 3.921 19 Cl 0.038 6.962 20 N -0.186 5.186 21 N -0.355 5.355 22 C 0.088 3.912 23 H 0.048 0.952 24 H 0.005 0.995 25 H 0.070 0.930 26 H 0.263 0.737 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.026 0.974 30 H 0.142 0.858 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.067 -7.791 10.936 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.128 3.872 3 H 0.001 0.999 4 C -0.554 4.554 5 H 0.096 0.904 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.790 3.210 9 H -0.192 1.192 10 H -0.220 1.220 11 H -0.194 1.194 12 N -0.238 5.238 13 C -0.101 4.101 14 C 0.197 3.803 15 C -0.403 4.403 16 C 0.267 3.733 17 O -0.416 6.416 18 C -0.129 4.129 19 Cl 0.066 6.934 20 N -0.005 5.005 21 N -0.149 5.149 22 C -0.051 4.051 23 H 0.067 0.933 24 H 0.024 0.976 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.045 0.955 30 H 0.160 0.840 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.767 -8.472 11.337 14.174 hybrid contribution 0.606 1.554 -1.164 2.034 sum -0.161 -6.918 10.174 12.304 Atomic orbital electron populations 1.21745 0.97363 0.99444 1.00085 1.19235 0.92405 0.90959 0.84553 0.99868 1.21250 1.31775 1.12912 0.89485 0.90434 1.25698 0.95133 0.95548 1.02041 1.70015 1.37436 1.24111 1.24451 0.85508 0.78793 0.78671 0.78057 1.19196 1.21962 1.19438 1.59004 1.10661 1.54874 0.99263 1.22395 0.82604 1.01117 1.03983 1.19584 0.84889 0.88286 0.87501 1.22500 1.17287 0.96287 1.04215 1.18593 0.80662 0.88434 0.85562 1.90821 1.58812 1.18022 1.73976 1.26679 0.99702 0.92492 0.94022 1.98413 1.82187 1.83203 1.29610 1.74881 1.13059 1.12404 1.00149 1.48097 1.39191 1.13387 1.14254 1.22458 1.04875 0.73943 1.03807 0.93293 0.97625 0.91137 0.92814 0.89872 0.88779 0.95488 0.84004 0.89965 0.86632 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 8.71 71.98 0.63 -5.13 16 2 C 0.23 10.42 1.76 44.17 0.08 10.50 16 3 H -0.02 -0.84 7.30 -2.39 -0.02 -0.86 16 4 C -0.52 -24.43 7.96 25.60 0.20 -24.22 16 5 H 0.08 3.46 6.71 -2.91 -0.02 3.44 16 6 C 0.02 0.76 5.29 84.65 0.45 1.21 16 7 N -0.92 -49.56 11.30 21.45 0.24 -49.32 16 8 Si 0.96 39.50 29.54 68.60 2.03 41.53 16 9 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 10 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 12 N -0.51 -18.11 3.19 -706.41 -2.25 -20.37 16 13 C 0.04 1.38 8.93 127.69 1.14 2.52 16 14 C 0.41 14.09 3.95 132.15 0.52 14.61 16 15 C -0.37 -14.36 8.55 22.69 0.19 -14.16 16 16 C 0.38 14.66 6.90 24.91 0.17 14.83 16 17 O -0.53 -23.35 17.54 -6.47 -0.11 -23.46 16 18 C 0.08 2.57 7.61 87.03 0.66 3.23 16 19 Cl 0.04 1.05 28.87 -2.72 -0.08 0.97 16 20 N -0.19 -5.50 11.49 -45.62 -0.52 -6.02 16 21 N -0.36 -10.35 3.93 -366.17 -1.44 -11.79 16 22 C 0.09 1.84 10.72 127.77 1.37 3.21 16 23 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 24 H 0.00 0.21 7.27 -2.39 -0.02 0.19 16 25 H 0.07 3.60 5.96 -2.39 -0.01 3.59 16 26 H 0.26 13.66 8.31 -92.70 -0.77 12.89 16 27 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 28 H 0.09 2.92 6.55 -2.39 -0.02 2.90 16 29 H 0.03 0.88 7.38 -2.39 -0.02 0.87 16 30 H 0.14 5.89 7.01 -2.91 -0.02 5.87 16 31 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.12 2.37 7.14 -2.39 -0.02 2.36 16 33 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -59.02 293.72 4.41 -54.61 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.13 Total: 7.26 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 5.42 Total: 6.59 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -3.98 Total: -87.50 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.11 Total: -23.46 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Atomic # 17 Polarization: 1.05 SS G_CDS: -0.08 Total: 0.97 kcal Total: -59.02 4.41 -54.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308742100.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.412 kcal (2) G-P(sol) polarization free energy of solvation -59.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds