Wall clock time and date at job start Mon Mar 30 2020 05:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 119.99857 * 2 1 4 4 H 1.48503 * 109.47168 * 239.99963 * 3 2 1 5 5 H 1.48500 * 109.47400 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46723 * 120.00352 * 3 2 1 7 7 C 1.38805 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99928 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47147 * 179.97438 * 10 9 7 12 12 N 1.31134 * 126.54990 * 90.24995 * 11 10 9 13 13 C 1.34497 * 105.61255 * 180.12272 * 12 11 10 14 14 C 1.50702 * 126.28775 * 179.90278 * 13 12 11 15 15 H 1.08998 * 109.50408 * 344.79827 * 14 13 12 16 16 C 1.53097 * 109.53822 * 104.90867 * 14 13 12 17 17 N 1.47020 * 109.25457 * 176.80629 * 16 14 13 18 18 C 1.47019 * 110.75264 * 301.38411 * 17 16 14 19 19 C 1.53100 * 109.25618 * 58.61322 * 18 17 16 20 20 O 1.43010 * 109.26176 * 303.15434 * 19 18 17 21 21 N 1.29949 * 107.42385 * 359.64341 * 13 12 11 22 22 O 1.21303 * 110.25388 * 0.22520 * 21 13 12 23 23 H 0.96995 * 120.00234 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47303 * 59.99825 * 10 9 7 25 25 H 1.09002 * 109.47144 * 299.99707 * 10 9 7 26 26 H 1.08998 * 109.50868 * 56.87463 * 16 14 13 27 27 H 1.08993 * 109.50841 * 296.74018 * 16 14 13 28 28 H 1.00901 * 110.99797 * 177.61030 * 17 16 14 29 29 H 1.08991 * 109.50394 * 178.55060 * 18 17 16 30 30 H 1.09001 * 109.50098 * 298.64008 * 18 17 16 31 31 H 1.09004 * 109.50411 * 63.09024 * 19 18 17 32 32 H 1.09006 * 109.50426 * 183.21692 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8914 -0.0029 11 6 1.9874 -5.3028 -0.0036 12 7 1.7175 -6.0351 -1.0573 13 6 1.2726 -7.2101 -0.5773 14 6 0.8284 -8.3964 -1.3936 15 1 0.6613 -8.0863 -2.4251 16 6 1.9100 -9.4792 -1.3539 17 7 1.4385 -10.6626 -2.0879 18 6 0.1906 -11.1750 -1.5035 19 6 -0.8737 -10.0751 -1.5416 20 8 -0.3856 -8.9222 -0.8505 21 7 1.3014 -7.1364 0.7198 22 8 1.7090 -6.0488 1.0697 23 1 -0.4850 0.8400 0.0004 24 1 3.1245 -3.7322 0.8872 25 1 3.1244 -3.7306 -0.8928 26 1 2.1151 -9.7510 -0.3185 27 1 2.8205 -9.1013 -1.8189 28 1 2.1479 -11.3797 -2.1116 29 1 -0.1539 -12.0349 -2.0778 30 1 0.3685 -11.4745 -0.4707 31 1 -1.0903 -9.8139 -2.5775 32 1 -1.7831 -10.4317 -1.0578 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309519891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:05 Heat of formation + Delta-G solvation = 29.364441 kcal Electronic energy + Delta-G solvation = -17968.029288 eV Core-core repulsion = 14865.522328 eV Total energy + Delta-G solvation = -3102.506960 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.31128 -39.70406 -35.70409 -34.95050 -33.47374 -32.55794 -31.17977 -28.48710 -27.15632 -25.62915 -24.85492 -23.23545 -21.95792 -20.42806 -18.14419 -17.85633 -17.42453 -16.82359 -16.37862 -15.29090 -15.07461 -14.91022 -14.75538 -14.59505 -14.33738 -14.09329 -13.36042 -12.99331 -12.73651 -12.13167 -11.92948 -11.83685 -11.44773 -11.17018 -11.09910 -11.06431 -10.91533 -10.74614 -10.31572 -10.00803 -9.44234 -9.17238 -8.93579 -8.54550 -6.73566 -6.35071 -4.10039 1.33927 2.22489 3.01689 3.16320 3.19056 3.21862 3.24465 3.40360 3.67288 4.06635 4.09199 4.29225 4.54188 4.63138 4.81557 4.88106 4.98592 5.02229 5.13351 5.25135 5.35427 5.48168 5.51771 5.60883 5.74174 5.84478 6.10277 6.22768 6.38174 6.81634 6.83204 7.48510 8.23031 8.42036 9.10541 10.72863 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.052705 B = 0.003440 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.136195 B = 8138.276827 C = 8295.634692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.925 3.075 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.080 0.920 9 S -0.080 6.080 10 C -0.043 4.043 11 C 0.229 3.771 12 N -0.473 5.473 13 C 0.165 3.835 14 C 0.193 3.807 15 H 0.100 0.900 16 C 0.033 3.967 17 N -0.685 5.685 18 C 0.016 3.984 19 C 0.064 3.936 20 O -0.372 6.372 21 N -0.367 5.367 22 O 0.083 5.917 23 H 0.271 0.729 24 H 0.104 0.896 25 H 0.112 0.888 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.351 0.649 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.265 -18.764 -2.706 19.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.750 3.250 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.676 4.676 8 H 0.098 0.902 9 S 0.145 5.855 10 C -0.192 4.192 11 C 0.009 3.991 12 N -0.208 5.208 13 C -0.108 4.108 14 C 0.133 3.867 15 H 0.118 0.882 16 C -0.097 4.097 17 N -0.317 5.317 18 C -0.113 4.113 19 C -0.013 4.013 20 O -0.289 6.289 21 N -0.075 5.075 22 O 0.022 5.978 23 H 0.081 0.919 24 H 0.122 0.878 25 H 0.130 0.870 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.169 0.831 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.283 -19.185 -2.953 19.453 hybrid contribution 2.230 0.866 0.661 2.482 sum 3.514 -18.318 -2.292 18.793 Atomic orbital electron populations 1.69990 1.06036 1.27966 1.46193 1.25031 0.95120 0.99234 0.94124 0.86124 0.79169 0.80657 0.79002 1.19725 1.20761 1.19730 1.22672 0.94850 0.90067 1.59966 0.90171 1.85259 1.05054 0.98189 1.96964 1.22002 1.04462 0.85696 1.07048 1.28234 0.94007 0.96898 0.79995 1.71871 1.18733 1.01553 1.28639 1.25037 1.01945 0.95469 0.88388 1.19837 0.84967 0.86777 0.95099 0.88204 1.22517 0.98007 0.91439 0.97782 1.60497 1.07032 1.09296 1.54880 1.22676 0.91599 0.98389 0.98674 1.22733 0.96040 0.84584 0.97965 1.88075 1.39076 1.45164 1.56633 1.74605 1.16788 1.00677 1.15434 1.85328 1.58734 1.17910 1.35835 0.91880 0.87794 0.86970 0.93471 0.88846 0.83076 0.89203 0.93904 0.91740 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.02 13.22 55.49 0.73 -24.29 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 20.53 29.55 -169.99 -5.02 15.50 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.53 -14.15 9.50 30.94 0.29 -13.85 16 8 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.08 -2.02 21.42 -107.50 -2.30 -4.32 16 10 C -0.04 -0.83 6.30 36.01 0.23 -0.60 16 11 C 0.23 4.32 7.77 -13.05 -0.10 4.22 16 12 N -0.47 -8.94 11.55 -9.86 -0.11 -9.05 16 13 C 0.17 2.90 7.11 -156.37 -1.11 1.79 16 14 C 0.19 2.76 3.36 -27.83 -0.09 2.67 16 15 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 16 C 0.03 0.37 6.03 -3.71 -0.02 0.35 16 17 N -0.68 -6.18 6.92 -113.49 -0.79 -6.97 16 18 C 0.02 0.13 6.76 -3.71 -0.03 0.11 16 19 C 0.06 0.63 7.01 37.21 0.26 0.89 16 20 O -0.37 -5.42 10.45 -35.23 -0.37 -5.78 16 21 N -0.37 -6.81 12.16 30.90 0.38 -6.44 16 22 O 0.08 1.55 11.31 18.10 0.20 1.75 16 23 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 25 H 0.11 2.02 8.14 -51.91 -0.42 1.60 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.35 2.37 8.90 -39.29 -0.35 2.02 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 295.53 15.07 4.45 4.45 Total: -1.00 -31.40 295.53 -7.19 -38.59 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -3.70 Total: -0.94 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.67 Total: -2.50 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.21 Total: -46.75 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.16 Total: -4.03 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: -2.02 SS G_CDS: -2.30 Total: -4.32 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.40 -7.19 -38.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309519891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.953 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds