Wall clock time and date at job start Mon Mar 30 2020 05:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 119.99857 * 2 1 4 4 H 1.48503 * 109.47168 * 239.99963 * 3 2 1 5 5 H 1.48500 * 109.47400 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46723 * 120.00352 * 3 2 1 7 7 C 1.38805 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99928 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47147 * 179.97438 * 10 9 7 12 12 N 1.31134 * 126.54990 * 90.24995 * 11 10 9 13 13 C 1.34497 * 105.61255 * 180.12272 * 12 11 10 14 14 C 1.50702 * 126.28775 * 179.90278 * 13 12 11 15 15 H 1.08998 * 109.50408 * 344.79827 * 14 13 12 16 16 C 1.53097 * 109.53822 * 104.90867 * 14 13 12 17 17 N 1.47020 * 109.25457 * 176.80629 * 16 14 13 18 18 C 1.47019 * 110.75264 * 301.38411 * 17 16 14 19 19 C 1.53100 * 109.25618 * 58.61322 * 18 17 16 20 20 O 1.43010 * 109.26176 * 303.15434 * 19 18 17 21 21 N 1.29949 * 107.42385 * 359.64341 * 13 12 11 22 22 O 1.21303 * 110.25388 * 0.22520 * 21 13 12 23 23 H 0.96995 * 120.00234 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47303 * 59.99825 * 10 9 7 25 25 H 1.09002 * 109.47144 * 299.99707 * 10 9 7 26 26 H 1.08998 * 109.50868 * 56.87463 * 16 14 13 27 27 H 1.08993 * 109.50841 * 296.74018 * 16 14 13 28 28 H 1.00901 * 110.99797 * 177.61030 * 17 16 14 29 29 H 1.08991 * 109.50394 * 178.55060 * 18 17 16 30 30 H 1.09001 * 109.50098 * 298.64008 * 18 17 16 31 31 H 1.09004 * 109.50411 * 63.09024 * 19 18 17 32 32 H 1.09006 * 109.50426 * 183.21692 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8914 -0.0029 11 6 1.9874 -5.3028 -0.0036 12 7 1.7175 -6.0351 -1.0573 13 6 1.2726 -7.2101 -0.5773 14 6 0.8284 -8.3964 -1.3936 15 1 0.6613 -8.0863 -2.4251 16 6 1.9100 -9.4792 -1.3539 17 7 1.4385 -10.6626 -2.0879 18 6 0.1906 -11.1750 -1.5035 19 6 -0.8737 -10.0751 -1.5416 20 8 -0.3856 -8.9222 -0.8505 21 7 1.3014 -7.1364 0.7198 22 8 1.7090 -6.0488 1.0697 23 1 -0.4850 0.8400 0.0004 24 1 3.1245 -3.7322 0.8872 25 1 3.1244 -3.7306 -0.8928 26 1 2.1151 -9.7510 -0.3185 27 1 2.8205 -9.1013 -1.8189 28 1 2.1479 -11.3797 -2.1116 29 1 -0.1539 -12.0349 -2.0778 30 1 0.3685 -11.4745 -0.4707 31 1 -1.0903 -9.8139 -2.5775 32 1 -1.7831 -10.4317 -1.0578 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309519891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:05 Heat of formation + Delta-G solvation = 3.984181 kcal Electronic energy + Delta-G solvation = -17969.129859 eV Core-core repulsion = 14865.522328 eV Total energy + Delta-G solvation = -3103.607531 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.76498 -40.63498 -37.11111 -35.80857 -34.87872 -34.58551 -32.19898 -30.01610 -28.09888 -27.68377 -25.84172 -24.60115 -23.13038 -21.44009 -19.93337 -19.33066 -18.77983 -17.92409 -17.40490 -16.88372 -16.42946 -16.28320 -15.84660 -15.74938 -15.54264 -15.23246 -14.81343 -14.58721 -13.87419 -13.50956 -13.19153 -13.12934 -12.85110 -12.83139 -12.67399 -12.51024 -12.25169 -12.02403 -11.79064 -11.18015 -11.12829 -10.88209 -10.40409 -9.67805 -8.76234 -8.37636 -6.17872 -0.17304 0.78578 1.38109 1.47745 1.52636 1.58733 1.76000 2.01127 2.24222 2.71654 2.95870 3.00115 3.12402 3.28108 3.55776 3.75483 3.88317 3.98237 4.11980 4.22565 4.29237 4.42344 4.49511 4.58343 4.61640 4.75085 4.82002 4.87433 5.43423 5.62096 5.91160 6.19360 6.24032 6.96669 7.05049 8.71676 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.052705 B = 0.003440 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.136195 B = 8138.276827 C = 8295.634692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.537 4.537 8 H 0.093 0.907 9 S -0.153 6.153 10 C -0.018 4.018 11 C 0.225 3.775 12 N -0.483 5.483 13 C 0.169 3.831 14 C 0.190 3.810 15 H 0.101 0.899 16 C 0.043 3.957 17 N -0.683 5.683 18 C 0.019 3.981 19 C 0.054 3.946 20 O -0.401 6.401 21 N -0.379 5.379 22 O 0.077 5.923 23 H 0.273 0.727 24 H 0.128 0.872 25 H 0.127 0.873 26 H 0.038 0.962 27 H 0.100 0.900 28 H 0.366 0.634 29 H 0.120 0.880 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.557 -19.651 -3.219 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.685 4.685 8 H 0.111 0.889 9 S 0.073 5.927 10 C -0.167 4.167 11 C 0.004 3.996 12 N -0.219 5.219 13 C -0.105 4.105 14 C 0.130 3.870 15 H 0.118 0.882 16 C -0.087 4.087 17 N -0.318 5.318 18 C -0.110 4.110 19 C -0.022 4.022 20 O -0.320 6.320 21 N -0.088 5.088 22 O 0.019 5.981 23 H 0.082 0.918 24 H 0.146 0.854 25 H 0.145 0.855 26 H 0.056 0.944 27 H 0.118 0.882 28 H 0.187 0.813 29 H 0.138 0.862 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.590 -20.100 -3.462 20.560 hybrid contribution 1.782 0.980 0.794 2.183 sum 4.371 -19.120 -2.668 19.794 Atomic orbital electron populations 1.70143 1.07937 1.28917 1.47676 1.26104 0.95953 1.03254 0.93483 0.84983 0.77773 0.75539 0.79626 1.18626 1.20661 1.18501 1.23077 0.95536 0.90480 1.59400 0.88885 1.85339 1.09706 1.00412 1.97218 1.21823 1.01915 0.83970 1.08992 1.28146 0.94303 0.96883 0.80232 1.71879 1.18929 1.02200 1.28887 1.25669 1.00679 0.95876 0.88315 1.20002 0.86128 0.86689 0.94167 0.88180 1.22346 0.97127 0.91593 0.97676 1.60484 1.07836 1.09180 1.54255 1.22715 0.90686 0.98497 0.99097 1.23065 0.97266 0.83751 0.98138 1.88027 1.39192 1.47020 1.57760 1.74595 1.17461 1.00691 1.16080 1.85315 1.58885 1.18081 1.35845 0.91847 0.85354 0.85481 0.94383 0.88170 0.81307 0.86231 0.94195 0.91268 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.33 13.22 21.65 0.29 -53.04 16 2 C 0.02 0.94 5.49 84.86 0.47 1.40 16 3 Si 1.00 41.56 29.55 68.60 2.03 43.59 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 5 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.54 -28.66 9.50 67.96 0.65 -28.01 16 8 H 0.09 4.54 7.80 -2.91 -0.02 4.52 16 9 S -0.15 -7.79 21.42 -56.49 -1.21 -9.00 16 10 C -0.02 -0.67 6.30 71.24 0.45 -0.23 16 11 C 0.22 8.39 7.77 88.38 0.69 9.08 16 12 N -0.48 -18.11 11.55 -303.15 -3.50 -21.61 16 13 C 0.17 5.86 7.11 138.46 0.98 6.85 16 14 C 0.19 5.30 3.36 29.88 0.10 5.40 16 15 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 16 C 0.04 0.92 6.03 86.31 0.52 1.44 16 17 N -0.68 -10.79 6.92 -512.98 -3.55 -14.34 16 18 C 0.02 0.27 6.76 86.31 0.58 0.85 16 19 C 0.05 0.97 7.01 72.02 0.50 1.48 16 20 O -0.40 -11.43 10.45 -148.98 -1.56 -12.99 16 21 N -0.38 -14.02 12.16 -60.29 -0.73 -14.75 16 22 O 0.08 2.88 11.31 74.83 0.85 3.73 16 23 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 24 H 0.13 4.17 8.14 -2.40 -0.02 4.15 16 25 H 0.13 4.39 8.14 -2.39 -0.02 4.37 16 26 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.37 3.96 8.90 -89.69 -0.80 3.17 16 29 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -67.81 295.53 -2.10 -69.90 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.35 Total: 10.23 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 4.94 Total: -1.73 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -7.50 Total: -103.74 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.71 Total: -9.26 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: -7.79 SS G_CDS: -1.21 Total: -9.00 kcal Total: -67.81 -2.10 -69.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309519891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.889 kcal (2) G-P(sol) polarization free energy of solvation -67.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds