Wall clock time and date at job start Mon Mar 30 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99744 * 2 1 4 4 H 1.48493 * 109.46970 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46788 * 299.99934 * 3 2 1 6 6 H 1.48500 * 109.47347 * 59.99802 * 3 2 1 7 7 C 1.37871 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00358 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.42906 * 113.99824 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46752 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47346 * 65.00065 * 12 11 10 14 14 C 1.48562 * 111.00287 * 54.57577 * 13 12 11 15 15 C 1.54372 * 104.59565 * 159.04050 * 14 13 12 16 16 F 1.39896 * 110.32754 * 217.25154 * 15 14 13 17 17 F 1.39909 * 110.40725 * 95.08973 * 15 14 13 18 18 C 1.54256 * 105.06293 * 336.15298 * 15 14 13 19 19 F 1.39902 * 110.32432 * 241.10343 * 18 15 14 20 20 F 1.39902 * 110.41346 * 118.93732 * 18 15 14 21 21 C 1.48557 * 111.00340 * 170.00086 * 13 12 11 22 22 H 0.96999 * 119.99956 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.47126 * 60.00138 * 9 7 2 24 24 H 1.09002 * 109.47402 * 300.00369 * 9 7 2 25 25 H 1.08993 * 109.47732 * 60.00254 * 11 10 9 26 26 H 1.09000 * 109.47141 * 299.99893 * 11 10 9 27 27 H 1.09004 * 109.46579 * 184.99441 * 12 11 10 28 28 H 1.08992 * 109.47046 * 304.99625 * 12 11 10 29 29 H 1.08997 * 110.41361 * 277.82151 * 14 13 12 30 30 H 1.09002 * 110.40923 * 40.26487 * 14 13 12 31 31 H 1.09001 * 110.40520 * 319.73443 * 21 13 12 32 32 H 1.08995 * 110.41522 * 82.05829 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 8 2.1798 -3.5852 0.0015 11 6 1.5653 -4.8754 0.0019 12 6 2.6483 -5.9561 0.0023 13 7 3.4084 -5.8873 1.2574 14 6 2.5040 -5.9716 2.4330 15 6 3.4154 -6.4254 3.5933 16 9 2.7291 -7.3084 4.4337 17 9 3.8688 -5.3185 4.3191 18 6 4.6005 -7.1431 2.9151 19 9 4.6607 -8.4784 3.3281 20 9 5.8013 -6.4892 3.2113 21 6 4.3054 -7.0627 1.4019 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5575 -0.8881 24 1 0.6248 -2.5563 0.8919 25 1 0.9448 -4.9827 -0.8877 26 1 0.9455 -4.9823 0.8922 27 1 2.1823 -6.9375 -0.0868 28 1 3.3218 -5.7958 -0.8396 29 1 2.0702 -4.9955 2.6497 30 1 1.7188 -6.7068 2.2565 31 1 3.8021 -7.9686 1.0640 32 1 5.2270 -6.9089 0.8406 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313326246.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:30 Heat of formation + Delta-G solvation = -229.830438 kcal Electronic energy + Delta-G solvation = -21635.306016 eV Core-core repulsion = 17517.029950 eV Total energy + Delta-G solvation = -4118.276067 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.92071 -48.69313 -47.91113 -47.00603 -38.92023 -36.50836 -32.86174 -31.68302 -29.18006 -28.02497 -26.59364 -23.65681 -22.36419 -22.03579 -21.04083 -18.68427 -18.46643 -17.05472 -17.02219 -16.59407 -16.31485 -15.94929 -15.25246 -14.99608 -14.62082 -14.52105 -14.25337 -14.18524 -14.03304 -13.98252 -13.78435 -13.67296 -13.13210 -12.91564 -12.54570 -12.28977 -12.16092 -11.79414 -11.31918 -10.91922 -10.83514 -10.79264 -10.58043 -10.04416 -9.12996 -8.93755 -8.85775 -8.21893 -6.12607 -4.13865 2.43845 3.02593 3.19003 3.26841 3.29573 3.36340 3.43341 3.63973 3.95183 4.31488 4.34758 4.44010 4.63065 4.86220 4.96544 5.12120 5.22616 5.24513 5.33130 5.45765 5.64801 5.88021 6.00845 6.26646 6.49503 7.02597 7.36941 7.79022 8.12161 8.52337 8.99923 9.51404 10.99015 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.027256 B = 0.004443 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.054981 B = 6300.700362 C = 6576.353525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.512 4.512 8 H 0.068 0.932 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.059 3.941 12 C 0.050 3.950 13 N -0.479 5.479 14 C -0.003 4.003 15 C 0.256 3.744 16 F -0.175 7.175 17 F -0.161 7.161 18 C 0.255 3.745 19 F -0.175 7.175 20 F -0.164 7.164 21 C -0.004 4.004 22 H 0.263 0.737 23 H 0.004 0.996 24 H 0.004 0.996 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.133 0.867 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 -17.345 3.538 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.550 4.550 8 H 0.086 0.914 9 C 0.119 3.881 10 O -0.300 6.300 11 C -0.019 4.019 12 C -0.077 4.077 13 N -0.204 5.204 14 C -0.132 4.132 15 C 0.218 3.782 16 F -0.156 7.156 17 F -0.142 7.142 18 C 0.217 3.783 19 F -0.156 7.156 20 F -0.144 7.144 21 C -0.133 4.133 22 H 0.073 0.927 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.151 0.849 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.652 -16.689 3.563 17.976 hybrid contribution -0.341 0.039 0.361 0.498 sum 5.311 -16.650 3.923 17.911 Atomic orbital electron populations 1.69968 1.06123 1.27074 1.50778 1.24943 0.94961 0.99469 0.95124 0.86289 0.80126 0.82561 0.77596 1.19393 1.20885 1.20834 1.21086 0.94193 0.89220 1.50520 0.91361 1.20224 0.88786 0.83779 0.95262 1.87979 1.34733 1.12190 1.95059 1.22315 0.93487 0.86411 0.99694 1.22496 0.96514 0.97323 0.91350 1.65630 1.16720 1.35918 1.02116 1.24237 0.94482 1.06020 0.88425 1.22468 0.90601 0.78766 0.86386 1.93087 1.80229 1.68577 1.73660 1.93145 1.89411 1.52512 1.79094 1.22484 0.83101 0.76102 0.96598 1.93088 1.96536 1.34181 1.91783 1.93123 1.46448 1.80422 1.94441 1.24206 1.02448 0.95880 0.90732 0.92725 0.97802 0.97817 0.93315 0.94362 0.92874 0.88334 0.84933 0.89472 0.89525 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.88 9.43 -34.45 -0.32 -15.20 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.19 5.13 5.69 36.00 0.20 5.34 16 10 O -0.38 -8.61 10.27 -35.23 -0.36 -8.98 16 11 C 0.06 0.96 5.81 37.16 0.22 1.17 16 12 C 0.05 0.61 5.44 -3.82 -0.02 0.59 16 13 N -0.48 -6.26 5.44 -229.98 -1.25 -7.51 16 14 C 0.00 -0.04 4.69 -2.18 -0.01 -0.05 16 15 C 0.26 3.38 2.70 -25.35 -0.07 3.31 16 16 F -0.17 -2.27 16.48 2.25 0.04 -2.23 16 17 F -0.16 -2.52 16.49 2.25 0.04 -2.48 16 18 C 0.26 3.11 2.70 -25.35 -0.07 3.04 16 19 F -0.18 -2.09 16.48 2.25 0.04 -2.05 16 20 F -0.16 -2.28 16.49 2.25 0.04 -2.25 16 21 C 0.00 -0.04 6.08 -2.18 -0.01 -0.05 16 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.00 0.11 8.14 -51.92 -0.42 -0.31 16 24 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.59 6.56 -51.93 -0.34 0.25 16 27 H 0.05 0.47 7.88 -51.93 -0.41 0.06 16 28 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.13 1.89 7.54 -51.93 -0.39 1.49 16 30 H 0.09 0.85 7.98 -51.93 -0.41 0.44 16 31 H 0.09 0.64 7.80 -51.93 -0.40 0.24 16 32 H 0.13 1.12 8.12 -51.93 -0.42 0.70 16 LS Contribution 288.35 15.07 4.35 4.35 Total: -1.00 -31.77 288.35 -5.20 -36.97 By element: Atomic # 1 Polarization: -2.73 SS G_CDS: -3.62 Total: -6.35 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -0.18 Total: -0.35 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: -0.51 Total: -33.41 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.36 Total: -8.98 kcal Atomic # 9 Polarization: -9.16 SS G_CDS: 0.15 Total: -9.01 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.77 -5.20 -36.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313326246.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.856 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds