Wall clock time and date at job start Mon Mar 30 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99744 * 2 1 4 4 H 1.48493 * 109.46970 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46788 * 299.99934 * 3 2 1 6 6 H 1.48500 * 109.47347 * 59.99802 * 3 2 1 7 7 C 1.37871 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00358 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.42906 * 113.99824 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46752 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47346 * 65.00065 * 12 11 10 14 14 C 1.48562 * 111.00287 * 54.57577 * 13 12 11 15 15 C 1.54372 * 104.59565 * 159.04050 * 14 13 12 16 16 F 1.39896 * 110.32754 * 217.25154 * 15 14 13 17 17 F 1.39909 * 110.40725 * 95.08973 * 15 14 13 18 18 C 1.54256 * 105.06293 * 336.15298 * 15 14 13 19 19 F 1.39902 * 110.32432 * 241.10343 * 18 15 14 20 20 F 1.39902 * 110.41346 * 118.93732 * 18 15 14 21 21 C 1.48557 * 111.00340 * 170.00086 * 13 12 11 22 22 H 0.96999 * 119.99956 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.47126 * 60.00138 * 9 7 2 24 24 H 1.09002 * 109.47402 * 300.00369 * 9 7 2 25 25 H 1.08993 * 109.47732 * 60.00254 * 11 10 9 26 26 H 1.09000 * 109.47141 * 299.99893 * 11 10 9 27 27 H 1.09004 * 109.46579 * 184.99441 * 12 11 10 28 28 H 1.08992 * 109.47046 * 304.99625 * 12 11 10 29 29 H 1.08997 * 110.41361 * 277.82151 * 14 13 12 30 30 H 1.09002 * 110.40923 * 40.26487 * 14 13 12 31 31 H 1.09001 * 110.40520 * 319.73443 * 21 13 12 32 32 H 1.08995 * 110.41522 * 82.05829 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 8 2.1798 -3.5852 0.0015 11 6 1.5653 -4.8754 0.0019 12 6 2.6483 -5.9561 0.0023 13 7 3.4084 -5.8873 1.2574 14 6 2.5040 -5.9716 2.4330 15 6 3.4154 -6.4254 3.5933 16 9 2.7291 -7.3084 4.4337 17 9 3.8688 -5.3185 4.3191 18 6 4.6005 -7.1431 2.9151 19 9 4.6607 -8.4784 3.3281 20 9 5.8013 -6.4892 3.2113 21 6 4.3054 -7.0627 1.4019 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5575 -0.8881 24 1 0.6248 -2.5563 0.8919 25 1 0.9448 -4.9827 -0.8877 26 1 0.9455 -4.9823 0.8922 27 1 2.1823 -6.9375 -0.0868 28 1 3.3218 -5.7958 -0.8396 29 1 2.0702 -4.9955 2.6497 30 1 1.7188 -6.7068 2.2565 31 1 3.8021 -7.9686 1.0640 32 1 5.2270 -6.9089 0.8406 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313326246.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:30 Heat of formation + Delta-G solvation = -252.445181 kcal Electronic energy + Delta-G solvation = -21636.286665 eV Core-core repulsion = 17517.029950 eV Total energy + Delta-G solvation = -4119.256716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.93691 -49.71960 -48.94691 -48.04884 -39.94823 -38.12755 -34.94006 -32.88647 -30.14343 -29.60886 -28.17581 -24.74878 -24.41444 -22.98627 -22.12795 -19.69961 -19.47821 -18.60151 -18.08711 -18.01116 -17.49074 -17.41745 -16.66022 -16.35289 -15.96442 -15.63830 -15.52554 -15.36055 -15.25071 -15.11048 -14.82573 -14.74188 -14.62013 -13.97802 -13.76948 -13.60695 -13.27155 -13.10933 -12.96773 -12.75880 -12.52051 -12.25899 -11.92527 -11.70467 -11.22894 -10.85226 -10.17466 -9.78047 -8.30972 -6.41819 1.40981 1.41771 1.47027 1.56643 2.09458 2.26198 2.33676 2.36363 2.65126 3.00034 3.03452 3.23446 3.40911 3.53914 3.91929 4.05223 4.25785 4.28140 4.39475 4.45255 4.50093 4.65308 4.84214 4.97181 5.21644 5.34209 5.54866 5.61250 5.99830 6.58140 6.87742 7.30513 8.81296 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.027256 B = 0.004443 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.054981 B = 6300.700362 C = 6576.353525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.978 3.022 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.397 6.397 11 C 0.045 3.955 12 C 0.060 3.940 13 N -0.512 5.512 14 C 0.001 3.999 15 C 0.247 3.753 16 F -0.175 7.175 17 F -0.182 7.182 18 C 0.255 3.745 19 F -0.173 7.173 20 F -0.178 7.178 21 C 0.007 3.993 22 H 0.270 0.730 23 H -0.012 1.012 24 H -0.016 1.016 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.802 -18.284 2.842 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.582 4.582 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.317 6.317 11 C -0.032 4.032 12 C -0.067 4.067 13 N -0.238 5.238 14 C -0.127 4.127 15 C 0.209 3.791 16 F -0.156 7.156 17 F -0.163 7.163 18 C 0.216 3.784 19 F -0.153 7.153 20 F -0.159 7.159 21 C -0.121 4.121 22 H 0.079 0.921 23 H 0.005 0.995 24 H 0.002 0.998 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.168 -17.657 2.865 18.922 hybrid contribution -0.534 0.223 0.610 0.841 sum 5.635 -17.435 3.475 18.649 Atomic orbital electron populations 1.70061 1.07616 1.28460 1.50878 1.25884 0.95903 1.03186 0.94088 0.85210 0.78720 0.77727 0.78221 1.19018 1.19573 1.19882 1.21422 0.94037 0.91056 1.51666 0.92291 1.19782 0.88573 0.84819 0.93397 1.87921 1.34702 1.13920 1.95129 1.22743 0.95527 0.84490 1.00475 1.22465 0.95534 0.97607 0.91045 1.65542 1.17533 1.38345 1.02360 1.24159 0.94968 1.05502 0.88073 1.22759 0.91486 0.78439 0.86386 1.93080 1.80309 1.68407 1.73770 1.93096 1.89732 1.53764 1.79689 1.22656 0.81985 0.75810 0.97905 1.93093 1.96452 1.33846 1.91934 1.93094 1.47278 1.80806 1.94694 1.24285 1.02727 0.96247 0.88837 0.92133 0.99472 0.99794 0.92310 0.93741 0.88152 0.88061 0.87611 0.86359 0.85830 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.98 44.58 29.54 68.60 2.03 46.61 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.54 -32.22 9.43 25.60 0.24 -31.98 16 8 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.21 11.41 5.69 71.23 0.41 11.81 16 10 O -0.40 -18.18 10.27 -148.98 -1.53 -19.71 16 11 C 0.04 1.40 5.81 71.98 0.42 1.82 16 12 C 0.06 1.28 5.44 86.31 0.47 1.75 16 13 N -0.51 -12.28 5.44 -881.52 -4.79 -17.07 16 14 C 0.00 0.03 4.69 86.45 0.41 0.44 16 15 C 0.25 6.33 2.70 31.49 0.08 6.41 16 16 F -0.17 -4.36 16.48 44.97 0.74 -3.62 16 17 F -0.18 -5.80 16.49 44.97 0.74 -5.06 16 18 C 0.25 5.75 2.70 31.49 0.08 5.84 16 19 F -0.17 -3.74 16.48 44.97 0.74 -3.00 16 20 F -0.18 -4.83 16.49 44.97 0.74 -4.09 16 21 C 0.01 0.12 6.08 86.45 0.53 0.64 16 22 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 23 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 24 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.04 1.33 6.56 -2.39 -0.02 1.31 16 27 H 0.10 1.24 7.88 -2.39 -0.02 1.22 16 28 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.11 3.07 7.54 -2.39 -0.02 3.05 16 30 H 0.12 1.97 7.98 -2.39 -0.02 1.95 16 31 H 0.12 1.21 7.80 -2.39 -0.02 1.19 16 32 H 0.14 2.02 8.12 -2.39 -0.02 2.00 16 Total: -1.00 -69.70 288.35 3.19 -66.51 By element: Atomic # 1 Polarization: -4.13 SS G_CDS: 1.14 Total: -2.99 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 3.10 Total: -2.37 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: -4.51 Total: -72.29 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.53 Total: -19.71 kcal Atomic # 9 Polarization: -18.73 SS G_CDS: 2.96 Total: -15.76 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -69.70 3.19 -66.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313326246.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.939 kcal (2) G-P(sol) polarization free energy of solvation -69.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds