Wall clock time and date at job start Mon Mar 30 2020 04:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34516 * 125.78924 * 2 1 4 4 C 1.41386 * 106.83832 * 180.29896 * 3 2 1 5 5 C 1.34513 * 106.84051 * 359.57017 * 4 3 2 6 6 S 1.76201 * 125.78612 * 180.11743 * 5 4 3 7 7 O 1.42100 * 106.39778 * 203.87984 * 6 5 4 8 8 O 1.42094 * 106.40565 * 336.80170 * 6 5 4 9 9 N 1.65603 * 107.21827 * 90.34431 * 6 5 4 10 10 C 1.36940 * 120.00131 * 89.99690 * 9 6 5 11 11 H 1.07997 * 120.00183 * 228.28483 * 10 9 6 12 12 C 1.38811 * 119.99776 * 48.28414 * 10 9 6 13 13 N 1.31621 * 120.00340 * 25.30265 * 12 10 9 14 14 Si 1.86803 * 119.99819 * 205.30352 * 12 10 9 15 15 H 1.48507 * 109.47049 * 60.00211 * 14 12 10 16 16 H 1.48503 * 109.47083 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47389 * 300.00286 * 14 12 10 18 18 C 1.46497 * 119.99891 * 269.99852 * 9 6 5 19 19 C 1.53004 * 117.49747 * 188.23005 * 18 9 6 20 20 C 1.53003 * 117.50081 * 119.60690 * 18 9 6 21 21 O 1.34299 * 108.41972 * 0.42873 * 5 4 3 22 22 H 1.08998 * 109.46766 * 90.00133 * 1 2 3 23 23 H 1.09000 * 109.46901 * 209.99988 * 1 2 3 24 24 H 1.08999 * 109.47199 * 329.99865 * 1 2 3 25 25 H 1.07995 * 126.57838 * 0.03277 * 3 2 1 26 26 H 1.07997 * 126.57688 * 179.73396 * 4 3 2 27 27 H 0.97000 * 120.00210 * 174.23739 * 13 12 10 28 28 H 1.08997 * 115.55132 * 333.93186 * 18 9 6 29 29 H 1.08997 * 117.50073 * 359.97438 * 19 18 9 30 30 H 1.09000 * 117.49987 * 145.01979 * 19 18 9 31 31 H 1.08996 * 117.49920 * 214.98059 * 20 18 9 32 32 H 1.09000 * 117.49721 * 359.97340 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6320 -0.0071 5 6 3.5814 -0.7122 -0.0013 6 16 4.9719 -1.7945 -0.0033 7 8 4.5203 -3.0268 -0.5480 8 8 6.0556 -1.0545 -0.5483 9 7 5.3602 -2.0965 1.5780 10 6 4.7923 -3.1573 2.2319 11 1 4.3598 -3.0188 3.2118 12 6 4.7724 -4.4104 1.6353 13 7 5.6778 -4.7242 0.7329 14 14 3.4607 -5.6517 2.1131 15 1 2.1177 -5.0917 1.8163 16 1 3.6572 -6.9028 1.3376 17 1 3.5640 -5.9471 3.5647 18 6 6.3112 -1.2290 2.2773 19 6 6.7765 -1.6667 3.6676 20 6 5.8111 -0.4890 3.5195 21 8 2.2925 -1.0894 -0.0007 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.9666 2.1204 0.0005 26 1 4.5212 1.2433 -0.0130 27 1 5.7159 -5.6258 0.3772 28 1 7.0339 -0.7160 1.6428 29 1 6.3746 -2.6000 4.0621 30 1 7.8055 -1.4418 3.9479 31 1 6.2049 0.5107 3.7025 32 1 4.7742 -0.6473 3.8162 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335777680.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:42 Heat of formation + Delta-G solvation = -18.721057 kcal Electronic energy + Delta-G solvation = -19659.151449 eV Core-core repulsion = 16522.266593 eV Total energy + Delta-G solvation = -3136.884855 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.88647 -37.24412 -35.64540 -34.12834 -33.36424 -32.66438 -31.51619 -30.72915 -26.31679 -25.05644 -21.63570 -21.40349 -20.63542 -20.29833 -18.97081 -17.90889 -16.28634 -16.04204 -15.64148 -15.11507 -14.67601 -14.32734 -13.95127 -13.50064 -13.05824 -12.90715 -12.83322 -12.36831 -12.33485 -11.82340 -11.63660 -11.48258 -11.15954 -10.87719 -10.67862 -10.51346 -10.42124 -10.29676 -10.04360 -9.94198 -9.47537 -9.40723 -8.74575 -8.16608 -7.62883 -6.65475 -4.23373 1.72152 2.05006 2.92654 3.17721 3.25819 3.28746 3.62515 4.05271 4.52487 4.66978 4.84618 5.07365 5.30473 5.41403 5.48988 5.52758 5.67197 5.72856 5.76377 5.79570 5.99168 6.06602 6.27131 6.32290 6.43283 6.46350 6.69555 6.93232 6.94815 7.26636 7.39230 7.60285 8.06893 8.75554 9.17607 10.38759 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.010086 C = 0.008168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.259173 B = 2775.500048 C = 3427.366949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.014 4.014 3 C -0.234 4.234 4 C -0.141 4.141 5 C -0.524 4.524 6 S 2.537 3.463 7 O -0.934 6.934 8 O -1.003 7.003 9 N -0.771 5.771 10 C -0.262 4.262 11 H 0.086 0.914 12 C 0.060 3.940 13 N -0.757 5.757 14 Si 0.929 3.071 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.271 1.271 18 C 0.095 3.905 19 C -0.161 4.161 20 C -0.213 4.213 21 O -0.119 6.119 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.144 0.856 26 H 0.151 0.849 27 H 0.285 0.715 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.094 6.072 3.907 8.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 C -0.253 4.253 4 C -0.162 4.162 5 C -0.644 4.644 6 S 2.632 3.368 7 O -0.922 6.922 8 O -0.992 6.992 9 N -0.592 5.592 10 C -0.414 4.414 11 H 0.104 0.896 12 C -0.161 4.161 13 N -0.392 5.392 14 Si 0.754 3.246 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.196 1.196 18 C -0.014 4.014 19 C -0.200 4.200 20 C -0.253 4.253 21 O -0.013 6.013 22 H 0.098 0.902 23 H 0.096 0.904 24 H 0.103 0.897 25 H 0.162 0.838 26 H 0.169 0.831 27 H 0.096 0.904 28 H 0.140 0.860 29 H 0.127 0.873 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.872 5.663 2.644 7.925 hybrid contribution -1.035 0.358 0.230 1.119 sum -5.908 6.021 2.875 8.912 Atomic orbital electron populations 1.20281 0.85543 1.03865 1.03268 1.22915 0.94553 0.86004 1.03239 1.21609 0.93015 0.98991 1.11711 1.21731 0.98125 0.93833 1.02495 1.38680 0.99044 1.12652 1.14017 1.13234 0.72997 0.72951 0.77574 1.93405 1.81018 1.39901 1.77851 1.93310 1.51652 1.74431 1.79847 1.52621 1.44238 1.30120 1.32262 1.19094 1.35224 0.84393 1.02655 0.89644 1.25768 0.96352 0.98659 0.95316 1.69798 1.27377 1.20915 1.21113 0.85965 0.81624 0.78867 0.78177 1.18926 1.20371 1.19614 1.21422 0.94843 0.96764 0.88411 1.23102 0.98210 0.99393 0.99318 1.23357 1.00074 0.96019 1.05837 1.84214 1.15047 1.32993 1.68998 0.90247 0.90384 0.89709 0.83809 0.83116 0.90433 0.86036 0.87257 0.89571 0.89639 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.42 36.01 0.38 -0.55 16 2 C -0.01 -0.25 7.32 -35.62 -0.26 -0.51 16 3 C -0.23 -4.23 10.81 -39.70 -0.43 -4.66 16 4 C -0.14 -2.96 10.62 -39.70 -0.42 -3.38 16 5 C -0.52 -12.49 7.36 29.42 0.22 -12.27 16 6 S 2.54 66.55 5.60 -107.50 -0.60 65.95 16 7 O -0.93 -27.31 14.01 -57.22 -0.80 -28.11 16 8 O -1.00 -27.33 16.61 -57.17 -0.95 -28.28 16 9 N -0.77 -18.82 3.06 -53.43 -0.16 -18.99 16 10 C -0.26 -6.45 7.69 -15.06 -0.12 -6.56 16 11 H 0.09 1.95 7.72 -52.49 -0.41 1.55 16 12 C 0.06 1.52 4.00 -17.43 -0.07 1.45 16 13 N -0.76 -20.54 11.52 55.49 0.64 -19.90 16 14 Si 0.93 19.91 29.63 -169.99 -5.04 14.87 16 15 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 18 C 0.09 1.97 6.38 -67.93 -0.43 1.54 16 19 C -0.16 -2.85 9.83 -26.73 -0.26 -3.11 16 20 C -0.21 -3.67 10.28 -26.73 -0.27 -3.94 16 21 O -0.12 -2.78 10.65 5.73 0.06 -2.72 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 26 H 0.15 2.88 8.06 -52.49 -0.42 2.45 16 27 H 0.29 7.23 8.32 -40.82 -0.34 6.89 16 28 H 0.12 2.49 7.38 -51.93 -0.38 2.11 16 29 H 0.11 2.03 6.96 -51.93 -0.36 1.67 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 292.47 15.07 4.41 4.41 Total: -1.00 -32.24 292.47 -7.79 -40.03 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -3.67 Total: 4.74 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: -1.68 Total: -32.01 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.48 Total: -38.89 kcal Atomic # 8 Polarization: -57.42 SS G_CDS: -1.69 Total: -59.11 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.04 Total: 14.87 kcal Atomic # 16 Polarization: 66.55 SS G_CDS: -0.60 Total: 65.95 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.24 -7.79 -40.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335777680.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.309 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds