Wall clock time and date at job start Mon Mar 30 2020 04:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34516 * 125.78924 * 2 1 4 4 C 1.41386 * 106.83832 * 180.29896 * 3 2 1 5 5 C 1.34513 * 106.84051 * 359.57017 * 4 3 2 6 6 S 1.76201 * 125.78612 * 180.11743 * 5 4 3 7 7 O 1.42100 * 106.39778 * 203.87984 * 6 5 4 8 8 O 1.42094 * 106.40565 * 336.80170 * 6 5 4 9 9 N 1.65603 * 107.21827 * 90.34431 * 6 5 4 10 10 C 1.36940 * 120.00131 * 89.99690 * 9 6 5 11 11 H 1.07997 * 120.00183 * 228.28483 * 10 9 6 12 12 C 1.38811 * 119.99776 * 48.28414 * 10 9 6 13 13 N 1.31621 * 120.00340 * 25.30265 * 12 10 9 14 14 Si 1.86803 * 119.99819 * 205.30352 * 12 10 9 15 15 H 1.48507 * 109.47049 * 60.00211 * 14 12 10 16 16 H 1.48503 * 109.47083 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47389 * 300.00286 * 14 12 10 18 18 C 1.46497 * 119.99891 * 269.99852 * 9 6 5 19 19 C 1.53004 * 117.49747 * 188.23005 * 18 9 6 20 20 C 1.53003 * 117.50081 * 119.60690 * 18 9 6 21 21 O 1.34299 * 108.41972 * 0.42873 * 5 4 3 22 22 H 1.08998 * 109.46766 * 90.00133 * 1 2 3 23 23 H 1.09000 * 109.46901 * 209.99988 * 1 2 3 24 24 H 1.08999 * 109.47199 * 329.99865 * 1 2 3 25 25 H 1.07995 * 126.57838 * 0.03277 * 3 2 1 26 26 H 1.07997 * 126.57688 * 179.73396 * 4 3 2 27 27 H 0.97000 * 120.00210 * 174.23739 * 13 12 10 28 28 H 1.08997 * 115.55132 * 333.93186 * 18 9 6 29 29 H 1.08997 * 117.50073 * 359.97438 * 19 18 9 30 30 H 1.09000 * 117.49987 * 145.01979 * 19 18 9 31 31 H 1.08996 * 117.49920 * 214.98059 * 20 18 9 32 32 H 1.09000 * 117.49721 * 359.97340 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6320 -0.0071 5 6 3.5814 -0.7122 -0.0013 6 16 4.9719 -1.7945 -0.0033 7 8 4.5203 -3.0268 -0.5480 8 8 6.0556 -1.0545 -0.5483 9 7 5.3602 -2.0965 1.5780 10 6 4.7923 -3.1573 2.2319 11 1 4.3598 -3.0188 3.2118 12 6 4.7724 -4.4104 1.6353 13 7 5.6778 -4.7242 0.7329 14 14 3.4607 -5.6517 2.1131 15 1 2.1177 -5.0917 1.8163 16 1 3.6572 -6.9028 1.3376 17 1 3.5640 -5.9471 3.5647 18 6 6.3112 -1.2290 2.2773 19 6 6.7765 -1.6667 3.6676 20 6 5.8111 -0.4890 3.5195 21 8 2.2925 -1.0894 -0.0007 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.9666 2.1204 0.0005 26 1 4.5212 1.2433 -0.0130 27 1 5.7159 -5.6258 0.3772 28 1 7.0339 -0.7160 1.6428 29 1 6.3746 -2.6000 4.0621 30 1 7.8055 -1.4418 3.9479 31 1 6.2049 0.5107 3.7025 32 1 4.7742 -0.6473 3.8162 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335777680.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:41 Heat of formation + Delta-G solvation = -41.080860 kcal Electronic energy + Delta-G solvation = -19660.121042 eV Core-core repulsion = 16522.266593 eV Total energy + Delta-G solvation = -3137.854449 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.46143 -38.86000 -37.67553 -36.17097 -35.19423 -34.17559 -32.86928 -32.55937 -27.66472 -26.93824 -23.04846 -22.97737 -22.27309 -21.82590 -20.83849 -19.64442 -18.18553 -17.75804 -17.32831 -16.94396 -16.29490 -16.03803 -15.56071 -15.24911 -14.58477 -14.11715 -14.10395 -13.86947 -13.83675 -13.66018 -13.17689 -12.99682 -12.88649 -12.58587 -12.56950 -12.33511 -12.13499 -12.06857 -11.82287 -11.68652 -11.06650 -10.97059 -10.60594 -9.68941 -9.40587 -8.56398 -6.17889 -0.11402 0.39705 1.43724 1.45711 1.56629 1.59376 2.14344 2.27918 2.76149 2.92781 3.17906 3.42109 3.77796 3.99260 4.04625 4.19859 4.34363 4.37790 4.47792 4.56424 4.63184 4.67960 4.80518 4.88172 4.94676 5.07189 5.25104 5.34479 5.53191 5.54249 5.71433 6.04216 6.14717 6.86581 7.30009 8.47779 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.010086 C = 0.008168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.259173 B = 2775.500048 C = 3427.366949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.012 4.012 3 C -0.235 4.235 4 C -0.136 4.136 5 C -0.573 4.573 6 S 2.530 3.470 7 O -0.981 6.981 8 O -1.031 7.031 9 N -0.779 5.779 10 C -0.259 4.259 11 H 0.103 0.897 12 C 0.016 3.984 13 N -0.796 5.796 14 Si 0.981 3.019 15 H -0.274 1.274 16 H -0.280 1.280 17 H -0.237 1.237 18 C 0.049 3.951 19 C -0.146 4.146 20 C -0.185 4.185 21 O -0.153 6.153 22 H 0.100 0.900 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.188 0.812 26 H 0.161 0.839 27 H 0.285 0.715 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.840 7.531 5.927 11.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 C -0.254 4.254 4 C -0.157 4.157 5 C -0.696 4.696 6 S 2.631 3.369 7 O -0.969 6.969 8 O -1.020 7.020 9 N -0.599 5.599 10 C -0.412 4.412 11 H 0.120 0.880 12 C -0.201 4.201 13 N -0.432 5.432 14 Si 0.802 3.198 15 H -0.199 1.199 16 H -0.205 1.205 17 H -0.160 1.160 18 C -0.059 4.059 19 C -0.185 4.185 20 C -0.225 4.225 21 O -0.048 6.048 22 H 0.118 0.882 23 H 0.100 0.900 24 H 0.140 0.860 25 H 0.205 0.795 26 H 0.179 0.821 27 H 0.095 0.905 28 H 0.133 0.867 29 H 0.118 0.882 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.565 7.132 4.681 10.765 hybrid contribution -0.570 0.024 -0.386 0.689 sum -7.136 7.156 4.295 10.981 Atomic orbital electron populations 1.20619 0.81291 1.05855 1.05188 1.24139 0.96906 0.84992 1.00517 1.22085 0.91254 1.01017 1.11076 1.22104 1.00163 0.93014 1.00434 1.38066 0.99365 1.13559 1.18576 1.13495 0.72906 0.72262 0.78226 1.93320 1.81876 1.42410 1.79260 1.93234 1.53195 1.74736 1.80876 1.52589 1.44604 1.30648 1.32093 1.19529 1.34647 0.84272 1.02790 0.87980 1.26746 0.97622 1.00727 0.95047 1.69879 1.29381 1.21369 1.22596 0.85187 0.78291 0.76487 0.79830 1.19877 1.20483 1.16001 1.21687 0.95712 0.98845 0.89631 1.23209 1.00054 0.99312 0.95965 1.23397 0.99935 0.97414 1.01734 1.84166 1.15218 1.35336 1.70054 0.88173 0.90038 0.86042 0.79459 0.82107 0.90463 0.86729 0.88238 0.86564 0.86428 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.60 10.42 71.24 0.74 -0.86 16 2 C -0.01 -0.44 7.32 24.83 0.18 -0.26 16 3 C -0.24 -7.91 10.81 22.19 0.24 -7.67 16 4 C -0.14 -5.65 10.62 22.19 0.24 -5.42 16 5 C -0.57 -27.92 7.36 66.97 0.49 -27.43 16 6 S 2.53 138.72 5.60 -56.49 -0.32 138.40 16 7 O -0.98 -60.48 14.01 -127.96 -1.79 -62.28 16 8 O -1.03 -59.01 16.61 -128.00 -2.13 -61.14 16 9 N -0.78 -38.80 3.06 -322.94 -0.99 -39.79 16 10 C -0.26 -12.85 7.69 84.03 0.65 -12.20 16 11 H 0.10 4.58 7.72 -2.91 -0.02 4.56 16 12 C 0.02 0.81 4.00 84.86 0.34 1.15 16 13 N -0.80 -44.69 11.52 21.65 0.25 -44.44 16 14 Si 0.98 40.54 29.63 68.60 2.03 42.57 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 16 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.24 -8.45 7.11 99.48 0.71 -7.74 16 18 C 0.05 2.04 6.38 44.99 0.29 2.33 16 19 C -0.15 -4.89 9.83 30.60 0.30 -4.59 16 20 C -0.19 -5.96 10.28 30.60 0.31 -5.65 16 21 O -0.15 -7.18 10.65 -2.42 -0.03 -7.20 16 22 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.19 4.47 8.06 -2.91 -0.02 4.45 16 26 H 0.16 6.10 8.06 -2.91 -0.02 6.07 16 27 H 0.29 15.07 8.32 -92.71 -0.77 14.30 16 28 H 0.12 4.81 7.38 -2.39 -0.02 4.79 16 29 H 0.10 3.54 6.96 -2.39 -0.02 3.52 16 30 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -73.81 292.47 1.94 -71.86 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 1.13 Total: 22.59 kcal Atomic # 6 Polarization: -64.38 SS G_CDS: 3.78 Total: -60.60 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -0.74 Total: -84.23 kcal Atomic # 8 Polarization: -126.67 SS G_CDS: -3.95 Total: -130.61 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: 138.72 SS G_CDS: -0.32 Total: 138.40 kcal Total: -73.81 1.94 -71.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335777680.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.782 kcal (2) G-P(sol) polarization free energy of solvation -73.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds