Wall clock time and date at job start Mon Mar 30 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86809 * 119.99622 * 2 1 4 4 H 1.48495 * 109.47083 * 270.00188 * 3 2 1 5 5 H 1.48491 * 109.46994 * 30.00457 * 3 2 1 6 6 H 1.48497 * 109.46730 * 150.00366 * 3 2 1 7 7 C 1.38794 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00085 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00174 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00149 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47438 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99425 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00229 * 180.02562 * 11 10 9 14 14 C 1.44903 * 119.41873 * 359.97438 * 13 11 10 15 15 C 1.53805 * 110.32453 * 268.89784 * 14 13 11 16 16 O 1.38135 * 111.49933 * 287.63695 * 15 14 13 17 17 C 1.42645 * 118.35101 * 63.90705 * 16 15 14 18 18 C 1.51564 * 109.69835 * 279.75405 * 17 16 15 19 19 C 1.53135 * 118.10240 * 302.46874 * 18 17 16 20 20 C 1.53002 * 60.00329 * 251.85194 * 19 18 17 21 21 C 1.47710 * 119.42110 * 180.02562 * 13 11 10 22 22 H 0.97004 * 120.00481 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46888 * 59.99867 * 10 9 7 24 24 H 1.09000 * 109.47230 * 300.00120 * 10 9 7 25 25 H 1.09006 * 109.32586 * 148.63791 * 14 13 11 26 26 H 1.08997 * 109.19260 * 29.07494 * 14 13 11 27 27 H 1.09005 * 109.07196 * 167.12165 * 15 14 13 28 28 H 1.08997 * 109.01928 * 48.12561 * 15 14 13 29 29 H 1.09007 * 109.43231 * 39.82165 * 17 16 15 30 30 H 1.08993 * 109.43619 * 159.68128 * 17 16 15 31 31 H 1.09002 * 117.49160 * 359.34234 * 19 18 17 32 32 H 1.08995 * 117.50538 * 144.36306 * 19 18 17 33 33 H 1.08999 * 117.49502 * 252.49555 * 20 19 18 34 34 H 1.09001 * 117.49627 * 107.49115 * 20 19 18 35 35 H 1.09004 * 109.38945 * 259.79936 * 21 13 11 36 36 H 1.08995 * 109.39354 * 19.60081 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2019 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9843 -0.0009 11 6 5.5732 -3.2323 -0.0021 12 8 6.3441 -2.2960 -0.0035 13 7 6.0459 -4.4944 -0.0026 14 6 5.1135 -5.6037 -0.0015 15 6 4.7927 -6.0304 1.4409 16 8 5.8616 -6.6810 2.0260 17 6 7.0706 -5.9514 2.2277 18 6 7.8543 -5.8928 0.9316 19 6 8.2446 -7.2147 0.2644 20 6 9.3130 -6.3565 0.9447 21 6 7.5053 -4.7227 -0.0032 22 1 -0.4851 0.8400 0.0004 23 1 3.6434 -3.4316 -0.8907 24 1 3.6442 -3.4312 0.8893 25 1 5.5531 -6.4450 -0.5374 26 1 4.1937 -5.2991 -0.5007 27 1 3.9311 -6.6981 1.4315 28 1 4.5502 -5.1446 2.0278 29 1 6.8330 -4.9388 2.5539 30 1 7.6699 -6.4465 2.9917 31 1 7.9473 -8.1372 0.7631 32 1 8.2444 -7.2480 -0.8251 33 1 10.0158 -5.8253 0.3028 34 1 9.7187 -6.7145 1.8910 35 1 7.8343 -4.9582 -1.0153 36 1 8.0126 -3.8218 0.3418 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336535703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:06 Heat of formation + Delta-G solvation = -48.385711 kcal Electronic energy + Delta-G solvation = -19068.367674 eV Core-core repulsion = 16066.029558 eV Total energy + Delta-G solvation = -3002.338117 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.60779 -38.64302 -37.07145 -35.11923 -32.45899 -30.57166 -29.49071 -27.15367 -26.44626 -25.58680 -23.29610 -22.42570 -19.82363 -19.21530 -17.75782 -17.16930 -16.88700 -16.32298 -15.94434 -15.15231 -15.03361 -14.81507 -14.49262 -14.04136 -13.89217 -13.27351 -13.20351 -12.81337 -12.29569 -12.22499 -12.02153 -11.91164 -11.63541 -11.27908 -11.03586 -10.90964 -10.77257 -10.56998 -10.21441 -9.87186 -9.81795 -9.49194 -9.02273 -8.61771 -8.51364 -6.94807 -6.30782 -4.02996 2.62978 2.85839 3.08551 3.31102 3.33104 3.48915 3.56206 3.87159 4.28493 4.31509 4.46655 4.56719 4.66920 4.70626 4.90214 4.96470 5.06324 5.08783 5.20297 5.33971 5.36225 5.40338 5.54377 5.63166 5.63742 5.69181 5.74462 5.76223 5.81797 5.87359 5.97360 6.49103 7.31708 7.41800 7.92146 8.36487 8.39387 9.15417 10.78401 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037747 B = 0.004542 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.596318 B = 6162.540917 C = 6582.802214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.122 4.122 11 C 0.529 3.471 12 O -0.517 6.517 13 N -0.615 5.615 14 C 0.071 3.929 15 C 0.052 3.948 16 O -0.377 6.377 17 C 0.108 3.892 18 C -0.178 4.178 19 C -0.157 4.157 20 C -0.159 4.159 21 C 0.151 3.849 22 H 0.271 0.729 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.759 -15.680 1.851 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.272 4.272 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.351 5.351 14 C -0.053 4.053 15 C -0.027 4.027 16 O -0.295 6.295 17 C 0.032 3.968 18 C -0.179 4.179 19 C -0.194 4.194 20 C -0.196 4.196 21 C 0.029 3.971 22 H 0.081 0.919 23 H 0.115 0.885 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.124 0.876 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.706 -14.360 1.890 21.364 hybrid contribution -0.867 -0.062 -0.224 0.898 sum 14.839 -14.421 1.667 20.759 Atomic orbital electron populations 1.69934 1.05906 1.27789 1.48012 1.24698 0.94432 0.98930 0.93138 0.86744 0.81895 0.83323 0.79951 1.19194 1.19906 1.15958 1.22299 0.88167 0.97544 1.58875 0.89375 1.84803 1.09402 1.00043 1.97407 1.23350 0.93968 1.04313 1.05577 1.20412 0.90754 0.81981 0.75158 1.90687 1.58748 1.41815 1.47914 1.47824 1.06154 1.05864 1.75211 1.22244 0.94409 0.90125 0.98554 1.22451 0.89266 0.98214 0.92737 1.86529 1.21356 1.41626 1.79985 1.21698 0.84640 0.97050 0.93419 1.22446 0.98795 0.97039 0.99626 1.23014 1.02254 0.94397 0.99747 1.23008 0.90406 1.03157 1.03053 1.21328 0.80577 0.97432 0.97768 0.91914 0.88475 0.88547 0.89703 0.88990 0.87621 0.93500 0.92383 0.88885 0.88238 0.88748 0.88360 0.88332 0.91683 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.43 13.97 55.49 0.78 -25.65 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.73 27.74 -169.99 -4.72 17.02 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.52 -14.92 10.04 30.94 0.31 -14.61 16 8 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 9 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 10 C -0.12 -2.36 4.66 36.01 0.17 -2.19 16 11 C 0.53 9.60 7.67 -10.98 -0.08 9.52 16 12 O -0.52 -11.22 15.26 5.56 0.08 -11.13 16 13 N -0.62 -8.49 2.56 -172.98 -0.44 -8.93 16 14 C 0.07 0.79 5.25 -4.48 -0.02 0.77 16 15 C 0.05 0.57 6.61 37.58 0.25 0.82 16 16 O -0.38 -4.29 10.02 -26.95 -0.27 -4.56 16 17 C 0.11 1.13 6.04 36.43 0.22 1.35 16 18 C -0.18 -1.72 1.65 -154.72 -0.26 -1.97 16 19 C -0.16 -1.26 9.76 -26.66 -0.26 -1.52 16 20 C -0.16 -1.20 9.89 -26.69 -0.26 -1.46 16 21 C 0.15 1.82 5.96 -2.97 -0.02 1.80 16 22 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 23 H 0.10 1.75 7.35 -51.91 -0.38 1.37 16 24 H 0.10 1.75 7.51 -51.92 -0.39 1.36 16 25 H 0.08 0.83 8.00 -51.93 -0.42 0.42 16 26 H 0.09 1.00 6.27 -51.93 -0.33 0.67 16 27 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.58 7.54 -51.93 -0.39 0.19 16 29 H 0.06 0.70 7.95 -51.92 -0.41 0.29 16 30 H 0.09 0.81 7.91 -51.93 -0.41 0.40 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.64 8.07 -51.93 -0.42 0.22 16 35 H 0.06 0.72 7.90 -51.93 -0.41 0.31 16 36 H 0.09 1.29 7.11 -51.93 -0.37 0.92 16 LS Contribution 306.51 15.07 4.62 4.62 Total: -1.00 -33.01 306.51 -7.19 -40.20 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.19 Total: -1.15 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -0.05 Total: -4.79 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.33 Total: -34.58 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.19 Total: -15.69 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.01 -7.19 -40.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336535703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.187 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds