Wall clock time and date at job start Mon Mar 30 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86809 * 119.99622 * 2 1 4 4 H 1.48495 * 109.47083 * 270.00188 * 3 2 1 5 5 H 1.48491 * 109.46994 * 30.00457 * 3 2 1 6 6 H 1.48497 * 109.46730 * 150.00366 * 3 2 1 7 7 C 1.38794 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00085 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00174 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00149 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47438 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99425 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00229 * 180.02562 * 11 10 9 14 14 C 1.44903 * 119.41873 * 359.97438 * 13 11 10 15 15 C 1.53805 * 110.32453 * 268.89784 * 14 13 11 16 16 O 1.38135 * 111.49933 * 287.63695 * 15 14 13 17 17 C 1.42645 * 118.35101 * 63.90705 * 16 15 14 18 18 C 1.51564 * 109.69835 * 279.75405 * 17 16 15 19 19 C 1.53135 * 118.10240 * 302.46874 * 18 17 16 20 20 C 1.53002 * 60.00329 * 251.85194 * 19 18 17 21 21 C 1.47710 * 119.42110 * 180.02562 * 13 11 10 22 22 H 0.97004 * 120.00481 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46888 * 59.99867 * 10 9 7 24 24 H 1.09000 * 109.47230 * 300.00120 * 10 9 7 25 25 H 1.09006 * 109.32586 * 148.63791 * 14 13 11 26 26 H 1.08997 * 109.19260 * 29.07494 * 14 13 11 27 27 H 1.09005 * 109.07196 * 167.12165 * 15 14 13 28 28 H 1.08997 * 109.01928 * 48.12561 * 15 14 13 29 29 H 1.09007 * 109.43231 * 39.82165 * 17 16 15 30 30 H 1.08993 * 109.43619 * 159.68128 * 17 16 15 31 31 H 1.09002 * 117.49160 * 359.34234 * 19 18 17 32 32 H 1.08995 * 117.50538 * 144.36306 * 19 18 17 33 33 H 1.08999 * 117.49502 * 252.49555 * 20 19 18 34 34 H 1.09001 * 117.49627 * 107.49115 * 20 19 18 35 35 H 1.09004 * 109.38945 * 259.79936 * 21 13 11 36 36 H 1.08995 * 109.39354 * 19.60081 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2019 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9843 -0.0009 11 6 5.5732 -3.2323 -0.0021 12 8 6.3441 -2.2960 -0.0035 13 7 6.0459 -4.4944 -0.0026 14 6 5.1135 -5.6037 -0.0015 15 6 4.7927 -6.0304 1.4409 16 8 5.8616 -6.6810 2.0260 17 6 7.0706 -5.9514 2.2277 18 6 7.8543 -5.8928 0.9316 19 6 8.2446 -7.2147 0.2644 20 6 9.3130 -6.3565 0.9447 21 6 7.5053 -4.7227 -0.0032 22 1 -0.4851 0.8400 0.0004 23 1 3.6434 -3.4316 -0.8907 24 1 3.6442 -3.4312 0.8893 25 1 5.5531 -6.4450 -0.5374 26 1 4.1937 -5.2991 -0.5007 27 1 3.9311 -6.6981 1.4315 28 1 4.5502 -5.1446 2.0278 29 1 6.8330 -4.9388 2.5539 30 1 7.6699 -6.4465 2.9917 31 1 7.9473 -8.1372 0.7631 32 1 8.2444 -7.2480 -0.8251 33 1 10.0158 -5.8253 0.3028 34 1 9.7187 -6.7145 1.8910 35 1 7.8343 -4.9582 -1.0153 36 1 8.0126 -3.8218 0.3418 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336535703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:06 Heat of formation + Delta-G solvation = -69.931650 kcal Electronic energy + Delta-G solvation = -19069.301976 eV Core-core repulsion = 16066.029558 eV Total energy + Delta-G solvation = -3003.272419 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.66844 -39.82850 -37.83645 -36.32756 -34.68765 -31.72896 -30.70576 -28.03161 -27.95208 -27.38609 -24.23016 -23.10761 -21.01493 -20.23330 -19.61654 -18.37237 -18.04001 -17.35867 -17.11512 -16.91115 -16.34587 -16.07137 -15.65845 -15.33182 -14.97751 -14.92612 -14.39164 -14.34438 -13.58740 -13.37769 -13.17043 -13.06105 -12.99564 -12.75901 -12.65275 -12.28001 -11.89714 -11.80207 -11.47408 -11.18619 -11.06672 -10.83366 -10.67155 -10.54859 -9.73743 -9.03196 -8.52935 -6.24550 0.93817 1.29909 1.40808 1.44386 1.51336 1.95315 2.23461 2.54956 2.65567 2.85439 3.11128 3.42685 3.61523 3.71970 3.82439 3.97921 4.04723 4.10166 4.12318 4.33286 4.37339 4.45498 4.60609 4.68828 4.74389 4.80995 4.83890 4.92344 5.03036 5.06036 5.29052 5.40807 5.69412 6.09900 6.15102 6.48183 6.92248 6.98430 8.59413 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037747 B = 0.004542 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.596318 B = 6162.540917 C = 6582.802214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.049 3.951 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.177 6.177 10 C -0.106 4.106 11 C 0.530 3.470 12 O -0.560 6.560 13 N -0.601 5.601 14 C 0.066 3.934 15 C 0.054 3.946 16 O -0.381 6.381 17 C 0.107 3.893 18 C -0.193 4.193 19 C -0.145 4.145 20 C -0.145 4.145 21 C 0.150 3.850 22 H 0.277 0.723 23 H 0.114 0.886 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.129 0.871 28 H 0.026 0.974 29 H 0.034 0.966 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.265 -17.311 1.721 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.157 4.157 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.162 1.162 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.050 5.950 10 C -0.257 4.257 11 C 0.318 3.682 12 O -0.439 6.439 13 N -0.334 5.334 14 C -0.057 4.057 15 C -0.025 4.025 16 O -0.299 6.299 17 C 0.030 3.970 18 C -0.194 4.194 19 C -0.182 4.182 20 C -0.182 4.182 21 C 0.028 3.972 22 H 0.087 0.913 23 H 0.132 0.868 24 H 0.128 0.872 25 H 0.125 0.875 26 H 0.115 0.885 27 H 0.147 0.853 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.212 -16.045 1.764 23.597 hybrid contribution -1.294 0.253 -0.176 1.330 sum 15.918 -15.792 1.588 22.479 Atomic orbital electron populations 1.70006 1.07245 1.29046 1.49046 1.25517 0.95228 1.02118 0.92838 0.85900 0.80662 0.79777 0.80243 1.18654 1.18232 1.16247 1.22429 0.89994 0.96765 1.58389 0.91808 1.84732 1.06755 1.05950 1.97565 1.23315 0.95674 0.99682 1.07028 1.20147 0.89682 0.83084 0.75319 1.90670 1.59273 1.43441 1.50483 1.47841 1.07622 1.04940 1.73026 1.22490 0.94212 0.89721 0.99255 1.22486 0.90030 0.98042 0.91939 1.86530 1.21633 1.41730 1.80026 1.21775 0.84734 0.95974 0.94468 1.22264 1.00757 0.97248 0.99100 1.23065 1.01520 0.93427 1.00180 1.23136 0.89255 1.02015 1.03796 1.21459 0.78882 0.97687 0.99165 0.91317 0.86836 0.87245 0.87479 0.88524 0.85303 0.95533 0.94778 0.86935 0.87732 0.88027 0.87695 0.86894 0.90314 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.54 13.97 21.65 0.30 -55.24 16 2 C 0.05 2.85 5.50 84.86 0.47 3.31 16 3 Si 0.91 45.00 27.74 68.60 1.90 46.90 16 4 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 7 C -0.53 -30.69 10.04 67.95 0.68 -30.01 16 8 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 9 S -0.18 -9.00 18.55 -56.49 -1.05 -10.05 16 10 C -0.11 -4.09 4.66 71.24 0.33 -3.76 16 11 C 0.53 19.06 7.67 87.66 0.67 19.73 16 12 O -0.56 -24.56 15.26 -3.02 -0.05 -24.60 16 13 N -0.60 -15.85 2.56 -819.57 -2.10 -17.95 16 14 C 0.07 1.33 5.25 86.95 0.46 1.79 16 15 C 0.05 1.07 6.61 72.25 0.48 1.55 16 16 O -0.38 -7.86 10.02 -119.36 -1.20 -9.05 16 17 C 0.11 2.05 6.04 71.51 0.43 2.48 16 18 C -0.19 -3.28 1.65 -52.32 -0.09 -3.37 16 19 C -0.15 -1.83 9.76 30.64 0.30 -1.54 16 20 C -0.14 -1.73 9.89 30.62 0.30 -1.43 16 21 C 0.15 3.39 5.96 86.41 0.51 3.91 16 22 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 23 H 0.11 3.99 7.35 -2.39 -0.02 3.97 16 24 H 0.11 3.92 7.51 -2.40 -0.02 3.90 16 25 H 0.11 1.75 8.00 -2.38 -0.02 1.73 16 26 H 0.10 1.88 6.27 -2.39 -0.01 1.86 16 27 H 0.13 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.03 0.64 7.54 -2.39 -0.02 0.62 16 29 H 0.03 0.81 7.95 -2.38 -0.02 0.79 16 30 H 0.11 1.70 7.91 -2.39 -0.02 1.68 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 1.17 8.05 -2.39 -0.02 1.15 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 1.06 8.07 -2.39 -0.02 1.05 16 35 H 0.08 1.58 7.90 -2.39 -0.02 1.56 16 36 H 0.07 1.96 7.11 -2.39 -0.02 1.95 16 Total: -1.00 -71.69 306.51 3.40 -68.29 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.03 Total: 9.02 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 4.55 Total: -7.33 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -1.79 Total: -73.18 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.24 Total: -33.65 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.90 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.05 Total: -10.05 kcal Total: -71.69 3.40 -68.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336535703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.643 kcal (2) G-P(sol) polarization free energy of solvation -71.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds