Wall clock time and date at job start Mon Mar 30 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99837 * 2 1 4 4 H 1.48494 * 109.46888 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47043 * 300.00063 * 3 2 1 6 6 H 1.48501 * 109.47079 * 59.99778 * 3 2 1 7 7 C 1.37871 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99755 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00411 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47520 * 179.97438 * 9 7 2 11 11 C 1.42895 * 114.00262 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47367 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47317 * 64.99253 * 12 11 10 14 14 C 1.46896 * 110.99913 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47220 * 325.00418 * 14 13 12 16 16 C 1.52997 * 109.46848 * 85.00348 * 14 13 12 17 17 O 1.42907 * 109.47171 * 64.99910 * 16 14 13 18 18 C 1.50701 * 109.47239 * 205.00362 * 14 13 12 19 19 C 1.38421 * 122.53940 * 139.74112 * 18 14 13 20 20 C 1.33386 * 114.91840 * 179.76426 * 19 18 14 21 21 S 1.75892 * 109.59444 * 0.47104 * 20 19 18 22 22 C 1.33388 * 122.53491 * 320.02789 * 18 14 13 23 23 H 0.97001 * 120.00503 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46933 * 59.99735 * 9 7 2 25 25 H 1.08997 * 109.46853 * 300.00157 * 9 7 2 26 26 H 1.09003 * 109.47295 * 59.99855 * 11 10 9 27 27 H 1.09004 * 109.47037 * 299.99745 * 11 10 9 28 28 H 1.09007 * 109.46416 * 304.99411 * 12 11 10 29 29 H 1.08990 * 109.47033 * 185.00108 * 12 11 10 30 30 H 1.00896 * 111.00002 * 303.96348 * 13 12 11 31 31 H 1.09002 * 109.47196 * 184.99830 * 16 14 13 32 32 H 1.09001 * 109.47630 * 304.99926 * 16 14 13 33 33 H 0.96695 * 114.00153 * 179.97438 * 17 16 14 34 34 H 1.07999 * 122.53819 * 359.97438 * 19 18 14 35 35 H 1.08002 * 125.20751 * 180.21186 * 20 19 18 36 36 H 1.07996 * 125.20729 * 359.97438 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9562 0.0006 13 7 3.4073 -5.8879 1.2564 14 6 4.4588 -6.9131 1.2922 15 1 4.1067 -7.8125 0.7869 16 6 5.7087 -6.3866 0.5843 17 8 6.2375 -5.2771 1.3135 18 6 4.7930 -7.2400 2.7249 19 6 5.0378 -8.5324 3.1560 20 6 5.3238 -8.6472 4.4538 21 16 5.2788 -7.0600 5.2104 22 6 4.8697 -6.3066 3.6746 23 1 -0.4851 0.8400 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 0.9452 -4.9822 -0.8903 27 1 0.9447 -4.9827 0.8898 28 1 3.3222 -5.7955 -0.8408 29 1 2.1821 -6.9374 -0.0894 30 1 3.7957 -4.9669 1.3944 31 1 6.4573 -7.1773 0.5326 32 1 5.4476 -6.0670 -0.4245 33 1 7.0331 -4.8920 0.9216 34 1 5.0035 -9.3828 2.4913 35 1 5.5447 -9.5736 4.9632 36 1 4.7062 -5.2498 3.5236 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339096708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:49 Heat of formation + Delta-G solvation = -64.530657 kcal Electronic energy + Delta-G solvation = -18399.998239 eV Core-core repulsion = 15396.960025 eV Total energy + Delta-G solvation = -3003.038214 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.13050 -37.01084 -36.46133 -34.75028 -32.68923 -30.67142 -28.62421 -27.43819 -26.23443 -24.34543 -22.36404 -21.79725 -20.98759 -18.59622 -17.92325 -16.97928 -16.41657 -15.86348 -15.79379 -15.16002 -14.92711 -14.45571 -14.35419 -13.76546 -13.34834 -12.98176 -12.77539 -12.63872 -12.40234 -12.19786 -11.74457 -11.61608 -11.53915 -11.22653 -10.78867 -10.76285 -10.71642 -10.49357 -10.04897 -9.97049 -9.07683 -8.81585 -8.65126 -8.34474 -8.15805 -8.13382 -6.09627 -4.11189 1.16581 1.77138 2.10252 2.79736 3.29773 3.36208 3.42437 4.11578 4.36164 4.50373 4.85710 4.94862 5.06721 5.18359 5.26988 5.28803 5.34890 5.43038 5.53761 5.58442 5.77066 5.82040 6.04721 6.11681 6.20685 6.36251 6.48910 6.61764 7.12990 7.24751 7.45694 7.59903 7.72181 7.80786 8.16972 8.59440 9.02399 9.53691 11.01998 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.003859 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.376587 B = 7253.258008 C = 7610.365741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.197 3.803 10 O -0.398 6.398 11 C 0.062 3.938 12 C 0.065 3.935 13 N -0.676 5.676 14 C 0.149 3.851 15 H 0.093 0.907 16 C 0.050 3.950 17 O -0.560 6.560 18 C -0.096 4.096 19 C -0.125 4.125 20 C -0.225 4.225 21 S 0.071 5.929 22 C -0.151 4.151 23 H 0.263 0.737 24 H 0.003 0.997 25 H 0.006 0.994 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.366 0.634 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.378 0.622 34 H 0.134 0.866 35 H 0.158 0.842 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.509 -17.765 4.408 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.318 6.318 11 C -0.016 4.016 12 C -0.065 4.065 13 N -0.309 5.309 14 C 0.036 3.964 15 H 0.111 0.889 16 C -0.030 4.030 17 O -0.365 6.365 18 C -0.108 4.108 19 C -0.156 4.156 20 C -0.360 4.360 21 S 0.334 5.666 22 C -0.287 4.287 23 H 0.073 0.927 24 H 0.021 0.979 25 H 0.024 0.976 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.187 0.813 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.225 0.775 34 H 0.152 0.848 35 H 0.176 0.824 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.810 -17.574 6.633 21.673 hybrid contribution 0.855 0.755 -2.474 2.725 sum 11.665 -16.819 4.159 20.887 Atomic orbital electron populations 1.69973 1.06102 1.27015 1.50688 1.24945 0.94959 0.99416 0.95195 0.86298 0.80009 0.82680 0.77608 1.19510 1.20896 1.20817 1.21090 0.94034 0.89389 1.50605 0.91574 1.20175 0.88709 0.83499 0.95354 1.87795 1.35710 1.13085 1.95223 1.22283 0.94484 0.85294 0.99529 1.22013 0.95760 0.98105 0.90576 1.60529 1.25930 1.09550 1.34938 1.20241 0.89069 0.95860 0.91266 0.88943 1.22836 0.96393 0.89140 0.94617 1.86494 1.47624 1.48458 1.53941 1.18589 1.03988 0.92088 0.96120 1.20011 1.03003 0.97222 0.95405 1.25410 1.11652 1.00750 0.98223 1.84253 1.69752 0.99732 1.12884 1.25425 1.05658 1.03812 0.93827 0.92729 0.97881 0.97615 0.94167 0.93529 0.94865 0.90693 0.81279 0.93674 0.93273 0.77518 0.84801 0.82395 0.81549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.51 -15.19 9.43 -34.44 -0.32 -15.52 16 8 H 0.07 1.95 7.81 -52.48 -0.41 1.53 16 9 C 0.20 5.46 5.69 36.01 0.20 5.66 16 10 O -0.40 -9.56 9.85 -35.23 -0.35 -9.91 16 11 C 0.06 1.17 6.28 37.16 0.23 1.40 16 12 C 0.06 0.97 5.90 -3.82 -0.02 0.94 16 13 N -0.68 -10.28 5.80 -107.95 -0.63 -10.91 16 14 C 0.15 1.83 2.73 -68.87 -0.19 1.64 16 15 H 0.09 0.98 7.74 -51.93 -0.40 0.58 16 16 C 0.05 0.56 6.71 37.16 0.25 0.81 16 17 O -0.56 -6.85 11.73 -35.23 -0.41 -7.26 16 18 C -0.10 -1.22 4.72 -106.25 -0.50 -1.72 16 19 C -0.12 -1.37 9.95 -41.21 -0.41 -1.78 16 20 C -0.23 -2.36 11.23 29.04 0.33 -2.03 16 21 S 0.07 0.83 23.34 -107.50 -2.51 -1.68 16 22 C -0.15 -2.07 9.54 29.04 0.28 -1.79 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.49 7.36 -51.93 -0.38 0.11 16 29 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 30 H 0.37 6.44 7.25 -39.29 -0.28 6.15 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.55 7.35 -51.93 -0.38 0.17 16 33 H 0.38 3.13 9.12 45.56 0.42 3.55 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.17 2.48 7.78 -52.49 -0.41 2.07 16 LS Contribution 320.11 15.07 4.82 4.82 Total: -1.00 -32.41 320.11 -7.98 -40.39 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.37 Total: 4.87 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -0.25 Total: -10.86 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.11 Total: -37.29 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.76 Total: -17.18 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.41 -7.98 -40.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.143 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds