Wall clock time and date at job start Mon Mar 30 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99837 * 2 1 4 4 H 1.48494 * 109.46888 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47043 * 300.00063 * 3 2 1 6 6 H 1.48501 * 109.47079 * 59.99778 * 3 2 1 7 7 C 1.37871 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99755 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00411 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47520 * 179.97438 * 9 7 2 11 11 C 1.42895 * 114.00262 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47367 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47317 * 64.99253 * 12 11 10 14 14 C 1.46896 * 110.99913 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47220 * 325.00418 * 14 13 12 16 16 C 1.52997 * 109.46848 * 85.00348 * 14 13 12 17 17 O 1.42907 * 109.47171 * 64.99910 * 16 14 13 18 18 C 1.50701 * 109.47239 * 205.00362 * 14 13 12 19 19 C 1.38421 * 122.53940 * 139.74112 * 18 14 13 20 20 C 1.33386 * 114.91840 * 179.76426 * 19 18 14 21 21 S 1.75892 * 109.59444 * 0.47104 * 20 19 18 22 22 C 1.33388 * 122.53491 * 320.02789 * 18 14 13 23 23 H 0.97001 * 120.00503 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46933 * 59.99735 * 9 7 2 25 25 H 1.08997 * 109.46853 * 300.00157 * 9 7 2 26 26 H 1.09003 * 109.47295 * 59.99855 * 11 10 9 27 27 H 1.09004 * 109.47037 * 299.99745 * 11 10 9 28 28 H 1.09007 * 109.46416 * 304.99411 * 12 11 10 29 29 H 1.08990 * 109.47033 * 185.00108 * 12 11 10 30 30 H 1.00896 * 111.00002 * 303.96348 * 13 12 11 31 31 H 1.09002 * 109.47196 * 184.99830 * 16 14 13 32 32 H 1.09001 * 109.47630 * 304.99926 * 16 14 13 33 33 H 0.96695 * 114.00153 * 179.97438 * 17 16 14 34 34 H 1.07999 * 122.53819 * 359.97438 * 19 18 14 35 35 H 1.08002 * 125.20751 * 180.21186 * 20 19 18 36 36 H 1.07996 * 125.20729 * 359.97438 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9562 0.0006 13 7 3.4073 -5.8879 1.2564 14 6 4.4588 -6.9131 1.2922 15 1 4.1067 -7.8125 0.7869 16 6 5.7087 -6.3866 0.5843 17 8 6.2375 -5.2771 1.3135 18 6 4.7930 -7.2400 2.7249 19 6 5.0378 -8.5324 3.1560 20 6 5.3238 -8.6472 4.4538 21 16 5.2788 -7.0600 5.2104 22 6 4.8697 -6.3066 3.6746 23 1 -0.4851 0.8400 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 0.9452 -4.9822 -0.8903 27 1 0.9447 -4.9827 0.8898 28 1 3.3222 -5.7955 -0.8408 29 1 2.1821 -6.9374 -0.0894 30 1 3.7957 -4.9669 1.3944 31 1 6.4573 -7.1773 0.5326 32 1 5.4476 -6.0670 -0.4245 33 1 7.0331 -4.8920 0.9216 34 1 5.0035 -9.3828 2.4913 35 1 5.5447 -9.5736 4.9632 36 1 4.7062 -5.2498 3.5236 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339096708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:49 Heat of formation + Delta-G solvation = -89.267400 kcal Electronic energy + Delta-G solvation = -18401.070904 eV Core-core repulsion = 15396.960025 eV Total energy + Delta-G solvation = -3004.110880 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.10153 -38.67264 -37.44717 -36.00175 -34.84500 -31.87728 -29.81469 -29.12265 -27.71175 -25.24851 -24.53495 -23.07713 -22.01116 -19.52831 -18.90075 -18.57772 -17.86030 -17.50274 -17.04111 -16.56982 -16.36189 -16.03547 -15.57476 -15.11827 -14.87645 -14.14113 -13.93524 -13.69894 -13.60421 -13.43997 -13.22889 -13.01597 -12.77906 -12.68336 -12.51463 -12.38375 -12.31652 -11.87077 -11.52866 -11.26832 -10.92285 -10.85583 -10.23431 -9.55312 -9.36936 -9.15684 -8.32846 -6.45208 0.26679 0.87818 1.21116 1.39168 1.40845 1.55383 1.90101 2.34104 3.01081 3.13279 3.24177 3.56844 3.96201 4.10183 4.27575 4.32455 4.35539 4.46247 4.49500 4.56545 4.64465 4.73092 4.83127 4.87605 4.90900 4.98024 5.17247 5.22709 5.54242 5.57448 5.70015 5.95269 6.18411 6.39598 6.53039 6.81537 6.89854 7.26870 8.79851 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.003859 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.376587 B = 7253.258008 C = 7610.365741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.211 3.789 10 O -0.408 6.408 11 C 0.053 3.947 12 C 0.075 3.925 13 N -0.689 5.689 14 C 0.145 3.855 15 H 0.116 0.884 16 C 0.053 3.947 17 O -0.583 6.583 18 C -0.095 4.095 19 C -0.134 4.134 20 C -0.214 4.214 21 S 0.065 5.935 22 C -0.184 4.184 23 H 0.271 0.729 24 H -0.014 1.014 25 H -0.018 1.018 26 H 0.050 0.950 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.109 0.891 30 H 0.348 0.652 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.392 0.608 34 H 0.163 0.837 35 H 0.188 0.812 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.761 -18.996 4.121 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.080 0.920 9 C 0.136 3.864 10 O -0.328 6.328 11 C -0.024 4.024 12 C -0.054 4.054 13 N -0.320 5.320 14 C 0.032 3.968 15 H 0.134 0.866 16 C -0.027 4.027 17 O -0.390 6.390 18 C -0.107 4.107 19 C -0.165 4.165 20 C -0.349 4.349 21 S 0.328 5.672 22 C -0.320 4.320 23 H 0.080 0.920 24 H 0.003 0.997 25 H 0.000 1.000 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.127 0.873 30 H 0.167 0.833 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.241 0.759 34 H 0.180 0.820 35 H 0.205 0.795 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.070 -18.840 6.340 23.256 hybrid contribution 0.440 1.033 -2.361 2.614 sum 12.510 -17.807 3.980 22.123 Atomic orbital electron populations 1.70078 1.07792 1.28583 1.50607 1.25965 0.95948 1.03410 0.93921 0.85133 0.78665 0.77309 0.78271 1.18797 1.19543 1.19754 1.21406 0.94053 0.90823 1.52082 0.92039 1.19784 0.88578 0.84725 0.93280 1.87762 1.35446 1.14355 1.95191 1.22621 0.96219 0.83970 0.99613 1.21991 0.94780 0.97844 0.90778 1.60534 1.27273 1.09225 1.34994 1.20427 0.88940 0.95758 0.91637 0.86594 1.22831 0.96461 0.89428 0.93978 1.86476 1.48654 1.49149 1.54761 1.18820 1.03103 0.92751 0.96035 1.20256 1.03033 0.97145 0.96078 1.25809 1.10131 1.00822 0.98115 1.84224 1.69827 1.00945 1.12240 1.25327 1.08061 1.03172 0.95443 0.92050 0.99651 1.00019 0.93152 0.94313 0.94418 0.87329 0.83311 0.91388 0.93452 0.75880 0.81980 0.79485 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.44 0.28 -56.56 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.98 44.96 29.54 68.60 2.03 46.99 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.55 -33.09 9.43 25.60 0.24 -32.85 16 8 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 9 C 0.21 12.18 5.69 71.24 0.41 12.58 16 10 O -0.41 -20.15 9.85 -148.98 -1.47 -21.62 16 11 C 0.05 2.01 6.28 71.98 0.45 2.46 16 12 C 0.07 2.15 5.90 86.30 0.51 2.66 16 13 N -0.69 -20.69 5.80 -495.46 -2.88 -23.57 16 14 C 0.14 3.32 2.73 44.17 0.12 3.44 16 15 H 0.12 2.08 7.74 -2.39 -0.02 2.07 16 16 C 0.05 1.09 6.71 71.98 0.48 1.57 16 17 O -0.58 -14.16 11.73 -148.98 -1.75 -15.91 16 18 C -0.09 -2.29 4.72 -20.92 -0.10 -2.39 16 19 C -0.13 -2.58 9.95 21.22 0.21 -2.37 16 20 C -0.21 -3.92 11.23 66.72 0.75 -3.17 16 21 S 0.06 1.47 23.34 -56.49 -1.32 0.15 16 22 C -0.18 -5.09 9.54 66.72 0.64 -4.46 16 23 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 24 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 25 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.04 1.05 7.36 -2.38 -0.02 1.04 16 29 H 0.11 2.40 8.05 -2.39 -0.02 2.38 16 30 H 0.35 12.60 7.25 -89.70 -0.65 11.95 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 0.99 7.35 -2.39 -0.02 0.98 16 33 H 0.39 6.39 9.12 -74.06 -0.68 5.71 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 35 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.14 4.56 7.78 -2.91 -0.02 4.54 16 Total: -1.00 -70.83 320.11 -1.16 -71.99 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -0.24 Total: 20.23 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 4.17 Total: -21.71 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.59 Total: -80.13 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -3.21 Total: -37.53 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.32 Total: 0.15 kcal Total: -70.83 -1.16 -71.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.277 kcal (2) G-P(sol) polarization free energy of solvation -70.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds