Wall clock time and date at job start Mon Mar 30 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00233 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00429 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00538 * 3 2 1 7 7 C 1.38803 * 119.99752 * 180.28287 * 2 1 3 8 8 H 1.08002 * 119.99684 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99509 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46826 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00056 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00048 * 180.02562 * 11 10 9 14 14 C 1.47153 * 120.98355 * 359.97438 * 13 11 10 15 15 C 1.53294 * 108.38778 * 230.51465 * 14 13 11 16 16 O 1.42957 * 109.22411 * 307.69971 * 15 14 13 17 17 C 1.42966 * 114.16770 * 62.57981 * 16 15 14 18 18 H 1.08993 * 109.51157 * 57.34581 * 17 16 15 19 19 C 1.53004 * 109.51162 * 177.44464 * 17 16 15 20 20 C 1.52995 * 117.49966 * 8.62296 * 19 17 16 21 21 C 1.52993 * 117.50156 * 299.99937 * 19 17 16 22 22 C 1.47156 * 120.98367 * 179.71992 * 13 11 10 23 23 H 0.97005 * 119.99723 * 359.71791 * 1 2 3 24 24 H 1.09000 * 109.47091 * 299.99657 * 10 9 7 25 25 H 1.09001 * 109.47322 * 60.00130 * 10 9 7 26 26 H 1.09002 * 109.67897 * 350.23955 * 14 13 11 27 27 H 1.09006 * 109.67693 * 110.79282 * 14 13 11 28 28 H 1.09005 * 109.51193 * 67.62264 * 15 14 13 29 29 H 1.08999 * 109.51418 * 187.72387 * 15 14 13 30 30 H 1.09003 * 115.54348 * 154.32509 * 19 17 16 31 31 H 1.08997 * 117.49850 * 0.02562 * 20 19 17 32 32 H 1.09008 * 117.49922 * 145.01815 * 20 19 17 33 33 H 1.09000 * 117.49796 * 214.98046 * 21 19 17 34 34 H 1.09002 * 117.49641 * 359.97438 * 21 19 17 35 35 H 1.09001 * 109.68134 * 249.21044 * 22 13 11 36 36 H 1.08999 * 109.67764 * 9.75769 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 1.4001 5 1 3.5479 1.4401 -0.7001 6 1 1.4479 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0064 9 16 1.1292 -2.7280 -0.0128 10 6 2.5158 -3.8914 -0.0180 11 6 1.9872 -5.3027 -0.0250 12 8 0.7909 -5.5022 -0.0268 13 7 2.8439 -6.3431 -0.0292 14 6 4.2993 -6.1259 -0.0278 15 6 4.9145 -6.9645 -1.1539 16 8 4.4745 -8.3187 -1.0266 17 6 3.0616 -8.4902 -1.1610 18 1 2.7375 -8.0991 -2.1253 19 6 2.7165 -9.9781 -1.0710 20 6 3.8356 -10.9396 -0.6660 21 6 3.3372 -10.9116 -2.1122 22 6 2.3516 -7.7298 -0.0299 23 1 -0.4850 0.8401 0.0041 24 1 3.1243 -3.7274 -0.9073 25 1 3.1244 -3.7354 0.8727 26 1 4.5132 -5.0706 -0.1970 27 1 4.7158 -6.4364 0.9306 28 1 4.5971 -6.5678 -2.1183 29 1 6.0016 -6.9261 -1.0844 30 1 1.7074 -10.2067 -0.7280 31 1 4.8175 -10.5121 -0.4632 32 1 3.5629 -11.8011 -0.0563 33 1 2.7366 -11.7545 -2.4540 34 1 3.9911 -10.4656 -2.8617 35 1 2.5750 -8.1992 0.9282 36 1 1.2750 -7.7370 -0.2006 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373603451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:50 Heat of formation + Delta-G solvation = -50.850870 kcal Electronic energy + Delta-G solvation = -18561.458836 eV Core-core repulsion = 15559.013822 eV Total energy + Delta-G solvation = -3002.445014 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.32229 -38.50601 -36.70992 -34.56354 -32.45326 -31.62479 -29.48308 -27.60163 -25.53009 -24.34668 -22.91404 -22.41070 -20.49251 -19.22541 -17.79406 -16.89696 -16.71865 -16.04053 -15.68877 -15.36211 -15.00155 -14.82830 -14.70057 -14.02472 -13.67696 -13.51815 -13.07028 -12.61525 -12.35619 -12.03503 -11.82225 -11.64362 -11.44118 -11.08419 -11.04605 -11.00604 -10.78733 -10.61713 -10.45058 -10.02291 -9.83470 -9.41581 -9.09041 -8.49065 -8.26345 -6.53515 -6.24070 -3.95220 2.80635 2.98031 3.20631 3.22848 3.28307 3.37450 3.52763 3.67795 4.17541 4.38167 4.61198 4.70964 4.76251 4.83001 4.93965 4.96511 5.11055 5.17297 5.20512 5.28720 5.43969 5.47291 5.48722 5.62085 5.67066 5.75487 5.80674 5.85175 5.93700 6.05739 6.06590 6.47996 6.94334 7.45799 7.56957 8.32468 8.47758 9.21110 10.83343 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.045970 B = 0.003690 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.952609 B = 7586.971825 C = 7994.616826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.272 1.272 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.151 4.151 11 C 0.536 3.464 12 O -0.514 6.514 13 N -0.625 5.625 14 C 0.074 3.926 15 C 0.049 3.951 16 O -0.376 6.376 17 C 0.109 3.891 18 H 0.067 0.933 19 C -0.155 4.155 20 C -0.163 4.163 21 C -0.173 4.173 22 C 0.090 3.910 23 H 0.269 0.731 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.792 -18.286 -2.107 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.197 1.197 6 H -0.207 1.207 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.301 4.301 11 C 0.324 3.676 12 O -0.388 6.388 13 N -0.362 5.362 14 C -0.050 4.050 15 C -0.029 4.029 16 O -0.295 6.295 17 C 0.050 3.950 18 H 0.085 0.915 19 C -0.173 4.173 20 C -0.200 4.200 21 C -0.210 4.210 22 C -0.033 4.033 23 H 0.078 0.922 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.117 0.883 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.136 0.864 31 H 0.124 0.876 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.952 -18.602 -2.079 20.748 hybrid contribution 1.860 1.564 0.013 2.430 sum 10.812 -17.038 -2.067 20.284 Atomic orbital electron populations 1.70022 1.05963 1.27492 1.46752 1.25000 0.95039 0.99052 0.94490 0.86156 0.79395 0.81510 0.78364 1.20252 1.19680 1.20734 1.22857 0.94881 0.91591 1.59092 0.90922 1.85424 1.04869 0.96348 1.96701 1.23552 1.06597 0.95242 1.04720 1.20375 0.86169 0.86137 0.74886 1.90696 1.15095 1.85161 1.47888 1.48171 1.06306 1.05761 1.75960 1.22414 0.80594 1.02040 0.99958 1.22974 0.99836 0.82362 0.97681 1.87899 1.22071 1.26078 1.93451 1.21953 0.81480 0.93669 0.97862 0.91467 1.22230 0.98862 0.89995 1.06238 1.22855 0.99410 1.00357 0.97378 1.22927 1.03748 1.01464 0.92887 1.22235 1.00926 0.81260 0.98905 0.92152 0.89265 0.89177 0.88305 0.90626 0.92494 0.87604 0.86352 0.87640 0.89113 0.88853 0.88681 0.90895 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.05 4.53 36.01 0.16 -2.89 16 11 C 0.54 10.31 7.73 -10.99 -0.08 10.23 16 12 O -0.51 -11.83 15.33 5.55 0.09 -11.75 16 13 N -0.62 -9.17 3.01 -172.03 -0.52 -9.69 16 14 C 0.07 0.82 6.54 -3.53 -0.02 0.80 16 15 C 0.05 0.47 6.98 37.31 0.26 0.73 16 16 O -0.38 -4.11 8.74 -35.23 -0.31 -4.42 16 17 C 0.11 1.21 3.15 -26.38 -0.08 1.12 16 18 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.15 -1.44 5.71 -90.62 -0.52 -1.95 16 20 C -0.16 -1.39 9.87 -26.74 -0.26 -1.66 16 21 C -0.17 -1.45 10.19 -26.74 -0.27 -1.72 16 22 C 0.09 1.16 5.94 -3.33 -0.02 1.14 16 23 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.09 1.66 7.66 -51.92 -0.40 1.26 16 25 H 0.09 1.69 8.02 -51.92 -0.42 1.27 16 26 H 0.10 1.06 6.05 -51.93 -0.31 0.75 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.12 0.99 8.12 -51.93 -0.42 0.57 16 31 H 0.11 0.99 7.06 -51.93 -0.37 0.63 16 32 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.44 7.08 -51.93 -0.37 1.07 16 LS Contribution 312.63 15.07 4.71 4.71 Total: -1.00 -33.61 312.63 -8.39 -41.99 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.21 Total: -0.81 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -0.64 Total: -7.09 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.22 Total: -35.03 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.22 Total: -16.17 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.61 -8.39 -41.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373603451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.857 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds