Wall clock time and date at job start Mon Mar 30 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00233 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00429 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00538 * 3 2 1 7 7 C 1.38803 * 119.99752 * 180.28287 * 2 1 3 8 8 H 1.08002 * 119.99684 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99509 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46826 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00056 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00048 * 180.02562 * 11 10 9 14 14 C 1.47153 * 120.98355 * 359.97438 * 13 11 10 15 15 C 1.53294 * 108.38778 * 230.51465 * 14 13 11 16 16 O 1.42957 * 109.22411 * 307.69971 * 15 14 13 17 17 C 1.42966 * 114.16770 * 62.57981 * 16 15 14 18 18 H 1.08993 * 109.51157 * 57.34581 * 17 16 15 19 19 C 1.53004 * 109.51162 * 177.44464 * 17 16 15 20 20 C 1.52995 * 117.49966 * 8.62296 * 19 17 16 21 21 C 1.52993 * 117.50156 * 299.99937 * 19 17 16 22 22 C 1.47156 * 120.98367 * 179.71992 * 13 11 10 23 23 H 0.97005 * 119.99723 * 359.71791 * 1 2 3 24 24 H 1.09000 * 109.47091 * 299.99657 * 10 9 7 25 25 H 1.09001 * 109.47322 * 60.00130 * 10 9 7 26 26 H 1.09002 * 109.67897 * 350.23955 * 14 13 11 27 27 H 1.09006 * 109.67693 * 110.79282 * 14 13 11 28 28 H 1.09005 * 109.51193 * 67.62264 * 15 14 13 29 29 H 1.08999 * 109.51418 * 187.72387 * 15 14 13 30 30 H 1.09003 * 115.54348 * 154.32509 * 19 17 16 31 31 H 1.08997 * 117.49850 * 0.02562 * 20 19 17 32 32 H 1.09008 * 117.49922 * 145.01815 * 20 19 17 33 33 H 1.09000 * 117.49796 * 214.98046 * 21 19 17 34 34 H 1.09002 * 117.49641 * 359.97438 * 21 19 17 35 35 H 1.09001 * 109.68134 * 249.21044 * 22 13 11 36 36 H 1.08999 * 109.67764 * 9.75769 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 1.4001 5 1 3.5479 1.4401 -0.7001 6 1 1.4479 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0064 9 16 1.1292 -2.7280 -0.0128 10 6 2.5158 -3.8914 -0.0180 11 6 1.9872 -5.3027 -0.0250 12 8 0.7909 -5.5022 -0.0268 13 7 2.8439 -6.3431 -0.0292 14 6 4.2993 -6.1259 -0.0278 15 6 4.9145 -6.9645 -1.1539 16 8 4.4745 -8.3187 -1.0266 17 6 3.0616 -8.4902 -1.1610 18 1 2.7375 -8.0991 -2.1253 19 6 2.7165 -9.9781 -1.0710 20 6 3.8356 -10.9396 -0.6660 21 6 3.3372 -10.9116 -2.1122 22 6 2.3516 -7.7298 -0.0299 23 1 -0.4850 0.8401 0.0041 24 1 3.1243 -3.7274 -0.9073 25 1 3.1244 -3.7354 0.8727 26 1 4.5132 -5.0706 -0.1970 27 1 4.7158 -6.4364 0.9306 28 1 4.5971 -6.5678 -2.1183 29 1 6.0016 -6.9261 -1.0844 30 1 1.7074 -10.2067 -0.7280 31 1 4.8175 -10.5121 -0.4632 32 1 3.5629 -11.8011 -0.0563 33 1 2.7366 -11.7545 -2.4540 34 1 3.9911 -10.4656 -2.8617 35 1 2.5750 -8.1992 0.9282 36 1 1.2750 -7.7370 -0.2006 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373603451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:49 Heat of formation + Delta-G solvation = -72.753562 kcal Electronic energy + Delta-G solvation = -18562.408608 eV Core-core repulsion = 15559.013822 eV Total energy + Delta-G solvation = -3003.394786 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.45456 -39.70945 -37.53907 -35.74473 -34.59615 -32.64660 -30.88901 -28.71076 -27.66641 -25.33076 -23.87577 -23.12793 -21.30623 -20.62432 -19.59431 -18.31786 -17.69067 -17.01324 -16.91583 -16.86770 -16.53101 -16.04459 -15.88214 -15.38781 -14.91895 -14.74800 -14.50845 -14.03411 -13.57032 -13.33880 -13.16407 -12.90134 -12.82920 -12.61162 -12.30412 -12.21610 -11.86474 -11.73938 -11.43962 -11.27966 -11.15235 -10.93106 -10.82469 -10.29411 -9.64872 -8.69962 -8.35788 -6.14882 1.21029 1.42465 1.43483 1.47522 1.55273 1.95562 2.25904 2.59249 2.94863 2.98598 3.19912 3.53885 3.66156 3.81754 3.90778 4.02347 4.09684 4.17206 4.20564 4.27448 4.34770 4.42325 4.49666 4.58190 4.71931 4.79094 4.86747 4.90478 5.05354 5.26579 5.34105 5.39732 5.40647 6.09399 6.14602 6.18889 7.02234 7.05414 8.73500 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.045970 B = 0.003690 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.952609 B = 7586.971825 C = 7994.616826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.256 1.256 6 H -0.279 1.279 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.152 6.152 10 C -0.123 4.123 11 C 0.534 3.466 12 O -0.564 6.564 13 N -0.614 5.614 14 C 0.066 3.934 15 C 0.050 3.950 16 O -0.377 6.377 17 C 0.117 3.883 18 H 0.055 0.945 19 C -0.167 4.167 20 C -0.157 4.157 21 C -0.168 4.168 22 C 0.088 3.912 23 H 0.271 0.729 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.638 -18.854 -2.133 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.180 1.180 6 H -0.204 1.204 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.075 5.925 10 C -0.274 4.274 11 C 0.322 3.678 12 O -0.442 6.442 13 N -0.349 5.349 14 C -0.056 4.056 15 C -0.027 4.027 16 O -0.296 6.296 17 C 0.058 3.942 18 H 0.073 0.927 19 C -0.185 4.185 20 C -0.194 4.194 21 C -0.205 4.205 22 C -0.034 4.034 23 H 0.080 0.920 24 H 0.128 0.872 25 H 0.128 0.872 26 H 0.123 0.877 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.157 0.843 30 H 0.143 0.857 31 H 0.117 0.883 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.855 -19.213 -2.108 22.674 hybrid contribution 1.048 1.604 0.024 1.916 sum 12.903 -17.609 -2.084 21.930 Atomic orbital electron populations 1.70190 1.08028 1.28651 1.47934 1.26151 0.95970 1.03375 0.93669 0.84931 0.78224 0.75877 0.78810 1.19299 1.18021 1.20379 1.23198 0.95379 0.91791 1.58992 0.89736 1.85626 1.10492 0.99337 1.97041 1.23362 1.03563 0.93974 1.06538 1.20206 0.85934 0.86653 0.74996 1.90678 1.17154 1.85742 1.50609 1.48183 1.07545 1.05445 1.73762 1.22762 0.78077 1.03047 1.01745 1.23131 1.01542 0.81384 0.96687 1.87916 1.21585 1.26839 1.93286 1.21827 0.81505 0.94595 0.96232 0.92694 1.22246 0.99611 0.88974 1.07710 1.22888 0.98564 1.00281 0.97661 1.22987 1.03451 1.01337 0.92720 1.22377 1.00244 0.80349 1.00448 0.91974 0.87211 0.87229 0.87661 0.88762 0.92898 0.84316 0.85702 0.88343 0.87690 0.87410 0.89134 0.89602 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.55 -30.97 9.50 67.96 0.65 -30.32 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 10 C -0.12 -4.93 4.53 71.24 0.32 -4.61 16 11 C 0.53 20.58 7.73 87.66 0.68 21.26 16 12 O -0.56 -26.86 15.33 -3.06 -0.05 -26.90 16 13 N -0.61 -17.35 3.01 -816.58 -2.46 -19.81 16 14 C 0.07 1.29 6.54 86.35 0.56 1.85 16 15 C 0.05 0.81 6.98 72.08 0.50 1.31 16 16 O -0.38 -7.35 8.74 -148.98 -1.30 -8.65 16 17 C 0.12 2.45 3.15 30.82 0.10 2.55 16 18 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 19 C -0.17 -2.84 5.71 -10.80 -0.06 -2.91 16 20 C -0.16 -2.33 9.87 30.59 0.30 -2.03 16 21 C -0.17 -2.47 10.19 30.59 0.31 -2.16 16 22 C 0.09 2.22 5.94 86.48 0.51 2.73 16 23 H 0.27 15.44 8.31 -92.70 -0.77 14.66 16 24 H 0.11 3.92 7.66 -2.40 -0.02 3.90 16 25 H 0.11 3.94 8.02 -2.39 -0.02 3.92 16 26 H 0.11 1.94 6.05 -2.39 -0.01 1.93 16 27 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.14 1.40 8.14 -2.39 -0.02 1.39 16 30 H 0.13 1.94 8.12 -2.39 -0.02 1.92 16 31 H 0.10 1.62 7.06 -2.39 -0.02 1.61 16 32 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.08 2.41 7.08 -2.39 -0.02 2.39 16 Total: -1.00 -74.72 312.63 2.75 -71.97 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.07 Total: 14.59 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 4.34 Total: -11.11 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -2.18 Total: -75.47 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -1.35 Total: -35.55 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -74.72 2.75 -71.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373603451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.779 kcal (2) G-P(sol) polarization free energy of solvation -74.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds