Wall clock time and date at job start Mon Mar 30 2020 05:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38215 * 119.99584 * 2 1 4 4 C 1.38356 * 120.05470 * 179.72537 * 3 2 1 5 5 F 1.35102 * 119.97950 * 180.02562 * 4 3 2 6 6 C 1.38688 * 120.04447 * 0.02562 * 4 3 2 7 7 F 1.35101 * 120.00953 * 180.02562 * 6 4 3 8 8 C 1.38322 * 119.98428 * 359.97438 * 6 4 3 9 9 C 1.38685 * 119.99152 * 179.73055 * 2 1 3 10 10 O 1.35935 * 120.01992 * 0.29028 * 9 2 1 11 11 C 1.42906 * 116.99906 * 180.02562 * 10 9 2 12 12 C 1.50702 * 109.47183 * 180.02562 * 11 10 9 13 13 O 1.21291 * 119.99864 * 359.97438 * 12 11 10 14 14 N 1.34769 * 120.00046 * 180.02562 * 12 11 10 15 15 C 1.37099 * 119.99914 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00200 * 359.97438 * 15 14 12 17 17 C 1.38963 * 119.99967 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99644 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 119.99749 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47486 * 90.00351 * 19 17 15 21 21 H 1.48503 * 109.46711 * 209.99873 * 19 17 15 22 22 H 1.48500 * 109.47494 * 329.99648 * 19 17 15 23 23 H 1.09001 * 109.47539 * 89.99427 * 1 2 3 24 24 H 1.09001 * 109.47307 * 210.00042 * 1 2 3 25 25 H 1.09006 * 109.47216 * 329.99346 * 1 2 3 26 26 H 1.07997 * 119.96955 * 359.74569 * 3 2 1 27 27 H 1.08002 * 120.02643 * 180.02562 * 8 6 4 28 28 H 1.09001 * 109.47491 * 300.00430 * 11 10 9 29 29 H 1.08997 * 109.47235 * 60.00362 * 11 10 9 30 30 H 0.96999 * 120.00050 * 359.97438 * 14 12 11 31 31 H 0.96999 * 119.99701 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1970 0.0000 4 6 3.5815 1.1985 0.0057 5 9 4.2554 2.3694 0.0063 6 6 4.2771 -0.0014 0.0110 7 9 5.6281 0.0009 0.0171 8 6 3.5873 -1.2003 0.0110 9 6 2.2002 -1.2011 0.0056 10 8 1.5207 -2.3785 0.0052 11 6 2.2993 -3.5768 0.0118 12 6 1.3816 -4.7722 0.0097 13 8 0.1791 -4.6135 0.0036 14 7 1.8970 -6.0174 0.0155 15 6 1.0621 -7.1049 0.0141 16 1 -0.0086 -6.9636 0.0087 17 6 1.5935 -8.3889 0.0196 18 7 2.8963 -8.5607 0.0267 19 14 0.4559 -9.8704 0.0169 20 1 0.1617 -10.2661 -1.3838 21 1 1.1126 -10.9999 0.7228 22 1 -0.8109 -9.5232 0.7097 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5140 26 1 1.6574 2.1320 -0.0042 27 1 4.1283 -2.1351 0.0155 28 1 2.9325 -3.6037 -0.8750 29 1 2.9238 -3.5995 0.9048 30 1 2.8586 -6.1443 0.0207 31 1 3.2672 -9.4569 0.0309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383007897.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:44 Heat of formation + Delta-G solvation = -143.900681 kcal Electronic energy + Delta-G solvation = -19777.931455 eV Core-core repulsion = 16081.778018 eV Total energy + Delta-G solvation = -3696.153438 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.52594 -48.59667 -40.36116 -38.36125 -36.94035 -34.07702 -32.68554 -31.44253 -30.16051 -28.31228 -26.67350 -24.81754 -22.94709 -21.93050 -19.69419 -18.63295 -18.16336 -17.52907 -17.17394 -16.52727 -16.21663 -15.86599 -15.71314 -15.02342 -14.76893 -14.57290 -14.11038 -14.01892 -13.83780 -13.80241 -13.29396 -13.00668 -12.53414 -11.91537 -11.87867 -11.70833 -11.66370 -11.34309 -11.16917 -10.72298 -10.48147 -10.34949 -9.66150 -9.13771 -8.59395 -8.17270 -8.13713 -6.55747 -3.97772 0.76017 0.90282 2.95477 3.09409 3.18566 3.20762 3.27444 3.66112 3.69514 4.09760 4.15124 4.36069 4.59145 4.78331 4.82915 5.07274 5.15297 5.33079 5.42680 5.52364 5.57013 5.59282 5.68740 5.72683 5.98769 6.10497 6.24776 6.50082 7.24091 7.42732 7.87906 8.41951 9.01634 9.32722 9.82382 10.61432 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035139 B = 0.003694 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.654610 B = 7577.436894 C = 8353.644319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.097 4.097 3 C -0.089 4.089 4 C 0.023 3.977 5 F -0.134 7.134 6 C 0.104 3.896 7 F -0.128 7.128 8 C -0.222 4.222 9 C 0.160 3.840 10 O -0.269 6.269 11 C 0.045 3.955 12 C 0.439 3.561 13 O -0.573 6.573 14 N -0.552 5.552 15 C -0.303 4.303 16 H 0.106 0.894 17 C 0.026 3.974 18 N -0.897 5.897 19 Si 0.934 3.066 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.268 1.268 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.394 0.606 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 15.621 -0.008 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.098 4.098 3 C -0.108 4.108 4 C 0.003 3.997 5 F -0.113 7.113 6 C 0.084 3.916 7 F -0.106 7.106 8 C -0.241 4.241 9 C 0.112 3.888 10 O -0.180 6.180 11 C -0.033 4.033 12 C 0.224 3.776 13 O -0.457 6.457 14 N -0.189 5.189 15 C -0.432 4.432 16 H 0.124 0.876 17 C -0.177 4.177 18 N -0.538 5.538 19 Si 0.760 3.240 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.192 1.192 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.169 0.831 27 H 0.171 0.829 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.228 0.772 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.618 15.532 -0.004 15.616 hybrid contribution 1.015 -0.748 -0.017 1.261 sum 2.632 14.784 -0.021 15.016 Atomic orbital electron populations 1.20676 0.88938 1.03667 1.03142 1.19180 0.97572 0.89039 1.04058 1.20731 0.90908 0.98990 1.00194 1.17437 0.90449 0.80247 1.11604 1.91499 1.80186 1.44985 1.94605 1.17302 0.77254 0.92855 1.04213 1.91528 1.28021 1.97268 1.93798 1.21180 0.93926 0.98267 1.10754 1.18713 0.89169 0.87030 0.93911 1.86259 1.33918 1.11057 1.86720 1.22657 0.94536 0.83576 1.02580 1.19205 0.88760 0.83479 0.86203 1.90574 1.14824 1.85206 1.55122 1.41693 1.09802 1.03617 1.63772 1.19733 0.92069 0.83165 1.48281 0.87580 1.25311 0.96416 0.99161 0.96770 1.69606 1.10586 1.24002 1.49560 0.85796 0.79749 0.79883 0.78539 1.20223 1.20782 1.19234 0.90644 0.89791 0.91378 0.83145 0.82891 0.90024 0.90028 0.77221 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.79 36.00 0.35 -0.82 16 2 C -0.10 -1.18 5.89 -104.47 -0.62 -1.80 16 3 C -0.09 -0.95 9.67 -39.55 -0.38 -1.34 16 4 C 0.02 0.28 7.30 -39.37 -0.29 -0.01 16 5 F -0.13 -1.70 17.18 2.25 0.04 -1.67 16 6 C 0.10 1.35 7.30 -39.38 -0.29 1.06 16 7 F -0.13 -1.73 17.18 2.25 0.04 -1.69 16 8 C -0.22 -2.85 9.01 -39.38 -0.35 -3.20 16 9 C 0.16 2.24 6.66 -39.24 -0.26 1.98 16 10 O -0.27 -4.58 8.71 -39.44 -0.34 -4.92 16 11 C 0.05 0.76 5.22 36.01 0.19 0.95 16 12 C 0.44 10.02 7.86 -10.99 -0.09 9.93 16 13 O -0.57 -15.40 16.07 -14.36 -0.23 -15.63 16 14 N -0.55 -13.32 5.29 -10.96 -0.06 -13.38 16 15 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 16 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 17 C 0.03 0.67 5.50 -17.46 -0.10 0.57 16 18 N -0.90 -23.41 13.05 55.50 0.72 -22.68 16 19 Si 0.93 20.25 29.55 -169.99 -5.02 15.22 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.08 1.09 7.52 -51.93 -0.39 0.70 16 25 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 27 H 0.15 1.75 6.30 -52.49 -0.33 1.42 16 28 H 0.08 1.17 7.66 -51.93 -0.40 0.77 16 29 H 0.08 1.16 7.66 -51.93 -0.40 0.77 16 30 H 0.39 8.92 7.90 -40.82 -0.32 8.60 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 289.03 15.07 4.36 4.36 Total: -1.00 -30.25 289.03 -5.09 -35.34 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -2.61 Total: 6.01 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.98 Total: -0.95 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.67 Total: -36.06 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.57 Total: -20.56 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.08 Total: -3.36 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.25 -5.09 -35.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383007897.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.563 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds