Wall clock time and date at job start Mon Mar 30 2020 05:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38215 * 119.99584 * 2 1 4 4 C 1.38356 * 120.05470 * 179.72537 * 3 2 1 5 5 F 1.35102 * 119.97950 * 180.02562 * 4 3 2 6 6 C 1.38688 * 120.04447 * 0.02562 * 4 3 2 7 7 F 1.35101 * 120.00953 * 180.02562 * 6 4 3 8 8 C 1.38322 * 119.98428 * 359.97438 * 6 4 3 9 9 C 1.38685 * 119.99152 * 179.73055 * 2 1 3 10 10 O 1.35935 * 120.01992 * 0.29028 * 9 2 1 11 11 C 1.42906 * 116.99906 * 180.02562 * 10 9 2 12 12 C 1.50702 * 109.47183 * 180.02562 * 11 10 9 13 13 O 1.21291 * 119.99864 * 359.97438 * 12 11 10 14 14 N 1.34769 * 120.00046 * 180.02562 * 12 11 10 15 15 C 1.37099 * 119.99914 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00200 * 359.97438 * 15 14 12 17 17 C 1.38963 * 119.99967 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99644 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 119.99749 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47486 * 90.00351 * 19 17 15 21 21 H 1.48503 * 109.46711 * 209.99873 * 19 17 15 22 22 H 1.48500 * 109.47494 * 329.99648 * 19 17 15 23 23 H 1.09001 * 109.47539 * 89.99427 * 1 2 3 24 24 H 1.09001 * 109.47307 * 210.00042 * 1 2 3 25 25 H 1.09006 * 109.47216 * 329.99346 * 1 2 3 26 26 H 1.07997 * 119.96955 * 359.74569 * 3 2 1 27 27 H 1.08002 * 120.02643 * 180.02562 * 8 6 4 28 28 H 1.09001 * 109.47491 * 300.00430 * 11 10 9 29 29 H 1.08997 * 109.47235 * 60.00362 * 11 10 9 30 30 H 0.96999 * 120.00050 * 359.97438 * 14 12 11 31 31 H 0.96999 * 119.99701 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1970 0.0000 4 6 3.5815 1.1985 0.0057 5 9 4.2554 2.3694 0.0063 6 6 4.2771 -0.0014 0.0110 7 9 5.6281 0.0009 0.0171 8 6 3.5873 -1.2003 0.0110 9 6 2.2002 -1.2011 0.0056 10 8 1.5207 -2.3785 0.0052 11 6 2.2993 -3.5768 0.0118 12 6 1.3816 -4.7722 0.0097 13 8 0.1791 -4.6135 0.0036 14 7 1.8970 -6.0174 0.0155 15 6 1.0621 -7.1049 0.0141 16 1 -0.0086 -6.9636 0.0087 17 6 1.5935 -8.3889 0.0196 18 7 2.8963 -8.5607 0.0267 19 14 0.4559 -9.8704 0.0169 20 1 0.1617 -10.2661 -1.3838 21 1 1.1126 -10.9999 0.7228 22 1 -0.8109 -9.5232 0.7097 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5140 26 1 1.6574 2.1320 -0.0042 27 1 4.1283 -2.1351 0.0155 28 1 2.9325 -3.6037 -0.8750 29 1 2.9238 -3.5995 0.9048 30 1 2.8586 -6.1443 0.0207 31 1 3.2672 -9.4569 0.0309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383007897.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:44 Heat of formation + Delta-G solvation = -162.194259 kcal Electronic energy + Delta-G solvation = -19778.724724 eV Core-core repulsion = 16081.778018 eV Total energy + Delta-G solvation = -3696.946707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.52505 -49.59454 -41.50252 -40.03270 -38.18985 -36.03459 -33.64933 -33.37558 -31.21869 -29.71922 -27.63320 -26.62791 -24.04600 -22.92361 -21.39998 -20.12077 -19.65886 -18.67536 -18.24321 -17.60185 -17.59578 -17.08955 -17.06673 -16.61256 -16.02571 -15.80985 -15.56244 -15.26271 -15.12906 -14.96678 -14.44305 -14.21029 -13.94407 -13.55155 -13.02681 -13.00110 -12.78984 -12.75132 -12.47048 -12.33116 -12.12013 -11.85436 -11.57123 -10.48187 -10.10528 -10.07007 -9.20162 -8.52307 -6.02196 -0.19533 -0.07292 1.36378 1.42686 1.54042 1.74843 1.89329 2.22295 2.32890 2.73500 3.13743 3.13941 3.21113 3.48460 3.64944 3.81408 4.00193 4.17737 4.23440 4.36291 4.56612 4.60765 4.71650 4.78554 4.85333 5.20134 5.33770 5.37534 5.53919 5.88360 6.14094 6.50594 7.04517 7.42019 7.96370 8.64582 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035139 B = 0.003694 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.654610 B = 7577.436894 C = 8353.644319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C -0.073 4.073 4 C 0.022 3.978 5 F -0.136 7.136 6 C 0.091 3.909 7 F -0.134 7.134 8 C -0.218 4.218 9 C 0.138 3.862 10 O -0.294 6.294 11 C 0.057 3.943 12 C 0.436 3.564 13 O -0.620 6.620 14 N -0.558 5.558 15 C -0.338 4.338 16 H 0.082 0.918 17 C -0.007 4.007 18 N -0.915 5.915 19 Si 0.994 3.006 20 H -0.270 1.270 21 H -0.270 1.270 22 H -0.272 1.272 23 H 0.081 0.919 24 H 0.056 0.944 25 H 0.098 0.902 26 H 0.186 0.814 27 H 0.165 0.835 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.401 0.599 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 16.553 -0.040 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.099 4.099 3 C -0.092 4.092 4 C 0.002 3.998 5 F -0.115 7.115 6 C 0.071 3.929 7 F -0.112 7.112 8 C -0.237 4.237 9 C 0.092 3.908 10 O -0.206 6.206 11 C -0.021 4.021 12 C 0.223 3.777 13 O -0.507 6.507 14 N -0.196 5.196 15 C -0.467 4.467 16 H 0.100 0.900 17 C -0.207 4.207 18 N -0.555 5.555 19 Si 0.818 3.182 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.196 1.196 23 H 0.099 0.901 24 H 0.075 0.925 25 H 0.117 0.883 26 H 0.203 0.797 27 H 0.182 0.818 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.235 0.765 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.040 16.479 -0.037 16.604 hybrid contribution 0.907 -0.917 -0.008 1.289 sum 2.947 15.562 -0.045 15.839 Atomic orbital electron populations 1.20697 0.88173 1.03846 1.03559 1.19431 0.98260 0.88888 1.03314 1.20997 0.90200 0.99719 0.98257 1.17631 0.91081 0.79908 1.11212 1.91499 1.80356 1.45039 1.94584 1.17429 0.77109 0.93297 1.05079 1.91512 1.28440 1.97311 1.93947 1.21229 0.93500 0.98828 1.10139 1.18916 0.89740 0.86449 0.95745 1.86209 1.34882 1.11790 1.87752 1.22461 0.92903 0.81412 1.05299 1.20205 0.89020 0.84631 0.83883 1.90537 1.17330 1.86163 1.56662 1.41720 1.09844 1.03849 1.64177 1.19695 0.91591 0.84837 1.50615 0.89976 1.26057 0.97889 1.01069 0.95720 1.69656 1.11565 1.24947 1.49301 0.84904 0.77793 0.76780 0.78758 1.19528 1.19467 1.19640 0.90092 0.92462 0.88318 0.79719 0.81757 0.87169 0.87182 0.76460 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.79 71.23 0.70 -1.44 16 2 C -0.10 -2.18 5.89 -19.77 -0.12 -2.30 16 3 C -0.07 -1.34 9.67 22.29 0.22 -1.13 16 4 C 0.02 0.49 7.30 22.41 0.16 0.65 16 5 F -0.14 -3.15 17.18 44.97 0.77 -2.38 16 6 C 0.09 2.21 7.30 22.40 0.16 2.37 16 7 F -0.13 -3.44 17.18 44.97 0.77 -2.67 16 8 C -0.22 -5.23 9.01 22.40 0.20 -5.03 16 9 C 0.14 3.69 6.66 22.49 0.15 3.84 16 10 O -0.29 -9.88 8.71 -73.78 -0.64 -10.52 16 11 C 0.06 1.87 5.22 71.24 0.37 2.24 16 12 C 0.44 20.16 7.86 87.66 0.69 20.85 16 13 O -0.62 -34.36 16.07 15.97 0.26 -34.10 16 14 N -0.56 -27.36 5.29 -306.98 -1.62 -28.98 16 15 C -0.34 -18.54 9.68 84.04 0.81 -17.73 16 16 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 17 C -0.01 -0.33 5.50 84.93 0.47 0.13 16 18 N -0.91 -47.30 13.05 21.67 0.28 -47.02 16 19 Si 0.99 41.29 29.55 68.60 2.03 43.32 16 20 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 21 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.06 1.48 7.52 -2.39 -0.02 1.46 16 25 H 0.10 1.34 8.09 -2.38 -0.02 1.32 16 26 H 0.19 2.07 8.06 -2.91 -0.02 2.04 16 27 H 0.16 3.44 6.30 -2.91 -0.02 3.42 16 28 H 0.11 2.95 7.66 -2.39 -0.02 2.93 16 29 H 0.11 2.95 7.66 -2.39 -0.02 2.93 16 30 H 0.40 18.20 7.90 -92.71 -0.73 17.47 16 31 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -66.07 289.03 6.13 -59.94 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.46 Total: 19.93 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 3.82 Total: 2.48 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -1.34 Total: -76.00 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.39 Total: -44.63 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 1.55 Total: -5.05 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -66.07 6.13 -59.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383007897.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.250 kcal (2) G-P(sol) polarization free energy of solvation -66.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds