Wall clock time and date at job start Mon Mar 30 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86806 * 119.99836 * 2 1 4 4 H 1.48502 * 109.46707 * 240.00015 * 3 2 1 5 5 H 1.48497 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47067 * 120.00125 * 3 2 1 7 7 C 1.39585 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99775 * 180.02562 * 7 2 1 9 9 N 1.36123 * 119.99772 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99619 * 180.02562 * 9 7 2 11 11 O 1.21500 * 120.00097 * 359.97438 * 10 9 7 12 12 C 1.48827 * 119.99721 * 180.02562 * 10 9 7 13 13 O 1.21438 * 119.99999 * 0.02562 * 12 10 9 14 14 N 1.34776 * 120.00114 * 179.97438 * 12 10 9 15 15 C 1.47422 * 125.64527 * 0.02809 * 14 12 10 16 16 C 1.54917 * 104.83074 * 204.09182 * 15 14 12 17 17 C 1.55158 * 101.57978 * 322.98980 * 16 15 14 18 18 O 1.42895 * 110.71894 * 277.13923 * 17 16 15 19 19 C 1.50693 * 110.71844 * 154.04477 * 17 16 15 20 20 N 1.34774 * 120.00239 * 154.99791 * 19 17 16 21 21 O 1.21284 * 120.00229 * 334.99694 * 19 17 16 22 22 C 1.47020 * 125.65281 * 179.97438 * 14 12 10 23 23 H 0.97000 * 119.99897 * 0.02562 * 1 2 3 24 24 H 0.96992 * 119.99953 * 0.02562 * 9 7 2 25 25 H 1.08998 * 110.36873 * 85.25268 * 15 14 12 26 26 H 1.09005 * 110.36491 * 322.92676 * 15 14 12 27 27 H 1.08998 * 111.00524 * 81.06438 * 16 15 14 28 28 H 1.08996 * 111.00376 * 204.87436 * 16 15 14 29 29 H 0.96695 * 114.00110 * 180.02562 * 18 17 16 30 30 H 0.96998 * 120.00104 * 0.02562 * 20 19 17 31 31 H 0.96995 * 120.00577 * 179.97438 * 20 19 17 32 32 H 1.09000 * 109.88493 * 59.55540 * 22 14 12 33 33 H 1.09003 * 109.87996 * 298.39630 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.0979 1.6964 -1.2125 5 1 1.2792 2.7465 -0.0006 6 1 3.0979 1.6965 1.2125 7 6 2.0081 -1.2088 0.0005 8 1 3.0881 -1.2088 0.0010 9 7 1.3275 -2.3877 0.0016 10 6 2.0014 -3.5549 0.0026 11 8 3.2164 -3.5548 0.0022 12 6 1.2573 -4.8437 0.0032 13 8 0.0429 -4.8437 0.0023 14 7 1.9311 -6.0110 0.0037 15 6 3.3982 -6.1560 0.0044 16 6 3.6586 -7.5556 -0.6065 17 6 2.4783 -8.3753 -0.0213 18 8 2.7827 -8.8275 1.2996 19 6 2.1419 -9.5396 -0.9170 20 7 1.5399 -10.6315 -0.4054 21 8 2.4130 -9.4941 -2.0983 22 6 1.3250 -7.3504 0.0049 23 1 -0.4850 0.8401 -0.0004 24 1 0.3576 -2.3876 0.0016 25 1 3.7836 -6.1090 1.0229 26 1 3.8562 -5.3821 -0.6116 27 1 3.6093 -7.5222 -1.6949 28 1 4.6161 -7.9555 -0.2730 29 1 2.0771 -9.3455 1.7104 30 1 1.3227 -10.6678 0.5392 31 1 1.3230 -11.3807 -0.9820 32 1 0.6986 -7.4746 -0.8785 33 1 0.7284 -7.4865 0.9069 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383456027.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:17 Heat of formation + Delta-G solvation = -143.280558 kcal Electronic energy + Delta-G solvation = -20972.317357 eV Core-core repulsion = 17419.571077 eV Total energy + Delta-G solvation = -3552.746280 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.105 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.85618 -39.40127 -37.83467 -36.98553 -35.75051 -34.20624 -33.77025 -31.49180 -30.74210 -29.02226 -26.13801 -24.67721 -22.61292 -21.86252 -20.36089 -19.21120 -18.86589 -18.18164 -17.46991 -16.61169 -16.10527 -15.80443 -15.61392 -14.98243 -14.85191 -14.41009 -14.15086 -13.93899 -13.80118 -13.39899 -13.05450 -12.54918 -12.34746 -12.05005 -11.81305 -11.60644 -11.30134 -11.17407 -10.96846 -10.57115 -10.43984 -10.34347 -10.13107 -9.93413 -9.71554 -8.44446 -8.24362 -8.15981 -6.68276 -4.00540 2.11922 2.39755 2.84348 3.14031 3.16674 3.17359 3.26048 3.72343 4.02891 4.09075 4.23030 4.35199 4.58993 4.89483 5.16613 5.20033 5.34207 5.48685 5.54905 5.81604 5.98044 6.20582 6.26498 6.34899 6.57416 6.71747 7.12645 7.29797 7.66037 7.76537 7.79215 8.26004 8.53625 8.93787 9.29675 9.82885 10.46475 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.045386 B = 0.003994 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.780489 B = 7009.141949 C = 7246.370721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.031 3.969 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.113 0.887 9 N -0.497 5.497 10 C 0.398 3.602 11 O -0.590 6.590 12 C 0.529 3.471 13 O -0.546 6.546 14 N -0.598 5.598 15 C 0.109 3.891 16 C -0.112 4.112 17 C 0.100 3.900 18 O -0.531 6.531 19 C 0.510 3.490 20 N -0.851 5.851 21 O -0.524 6.524 22 C 0.097 3.903 23 H 0.281 0.719 24 H 0.405 0.595 25 H 0.074 0.926 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.375 0.625 30 H 0.399 0.601 31 H 0.405 0.595 32 H 0.078 0.922 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 -17.405 2.291 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.176 4.176 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.131 0.869 9 N -0.131 5.131 10 C 0.182 3.818 11 O -0.478 6.478 12 C 0.317 3.683 13 O -0.423 6.423 14 N -0.334 5.334 15 C -0.013 4.013 16 C -0.150 4.150 17 C 0.055 3.945 18 O -0.337 6.337 19 C 0.293 3.707 20 N -0.416 5.416 21 O -0.398 6.398 22 C -0.027 4.027 23 H 0.092 0.908 24 H 0.240 0.760 25 H 0.092 0.908 26 H 0.132 0.868 27 H 0.123 0.877 28 H 0.115 0.885 29 H 0.223 0.777 30 H 0.228 0.772 31 H 0.237 0.763 32 H 0.096 0.904 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.851 -16.623 1.435 16.926 hybrid contribution -1.111 -0.080 0.466 1.207 sum 1.740 -16.702 1.901 16.900 Atomic orbital electron populations 1.69480 1.06545 1.29511 1.45106 1.25597 0.95628 1.00498 0.95832 0.85766 0.78866 0.79253 0.79538 1.19338 1.20603 1.19346 1.19845 0.93980 0.81780 1.48001 0.86906 1.41535 1.10474 1.04106 1.57010 1.18727 0.87777 0.83884 0.91372 1.90526 1.12729 1.86050 1.58516 1.20550 0.87024 0.84560 0.76208 1.90695 1.13941 1.87431 1.50213 1.48010 1.08103 1.03722 1.73569 1.22606 0.79879 0.96255 1.02534 1.22974 0.96318 0.93830 1.01920 1.22478 0.98259 0.91085 0.82639 1.86730 1.45339 1.74021 1.27596 1.20934 0.76735 0.84101 0.88954 1.43813 1.63737 1.19882 1.14187 1.90787 1.52232 1.80599 1.16203 1.22357 0.94421 0.82846 1.03118 0.90831 0.76012 0.90795 0.86787 0.87682 0.88511 0.77735 0.77173 0.76326 0.90390 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.20 13.03 55.53 0.72 -22.47 16 2 C 0.03 0.81 5.51 -17.40 -0.10 0.72 16 3 Si 0.94 19.96 29.56 -169.99 -5.02 14.94 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.31 -8.35 9.67 -15.15 -0.15 -8.50 16 8 H 0.11 3.12 7.15 -52.49 -0.38 2.75 16 9 N -0.50 -13.30 5.25 -11.59 -0.06 -13.36 16 10 C 0.40 10.05 7.78 -11.88 -0.09 9.95 16 11 O -0.59 -15.35 13.33 5.37 0.07 -15.28 16 12 C 0.53 11.89 7.89 -11.88 -0.09 11.80 16 13 O -0.55 -13.09 16.80 5.42 0.09 -13.00 16 14 N -0.60 -10.91 3.33 -171.26 -0.57 -11.48 16 15 C 0.11 1.78 6.05 -2.53 -0.02 1.77 16 16 C -0.11 -1.46 6.12 -24.58 -0.15 -1.62 16 17 C 0.10 1.15 1.22 -89.94 -0.11 1.04 16 18 O -0.53 -4.93 13.00 -35.23 -0.46 -5.39 16 19 C 0.51 5.56 6.98 -10.99 -0.08 5.49 16 20 N -0.85 -5.09 8.80 31.22 0.27 -4.82 16 21 O -0.52 -7.85 16.66 5.55 0.09 -7.76 16 22 C 0.10 1.36 6.22 -3.07 -0.02 1.34 16 23 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 24 H 0.40 10.93 7.35 -40.82 -0.30 10.63 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.11 2.10 6.15 -51.93 -0.32 1.78 16 27 H 0.10 1.45 7.23 -51.93 -0.38 1.08 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.37 1.63 7.55 45.56 0.34 1.98 16 30 H 0.40 1.05 7.26 -40.82 -0.30 0.75 16 31 H 0.41 2.00 8.93 -40.82 -0.36 1.63 16 32 H 0.08 1.14 7.82 -51.93 -0.41 0.73 16 33 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 LS Contribution 290.60 15.07 4.38 4.38 Total: -1.00 -34.34 290.60 -3.77 -38.11 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -2.49 Total: 14.14 kcal Atomic # 6 Polarization: 22.79 SS G_CDS: -0.80 Total: 21.99 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.37 Total: -52.12 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.20 Total: -41.43 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.34 -3.77 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383456027.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.168 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds