Wall clock time and date at job start Mon Mar 30 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86806 * 119.99836 * 2 1 4 4 H 1.48502 * 109.46707 * 240.00015 * 3 2 1 5 5 H 1.48497 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47067 * 120.00125 * 3 2 1 7 7 C 1.39585 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99775 * 180.02562 * 7 2 1 9 9 N 1.36123 * 119.99772 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99619 * 180.02562 * 9 7 2 11 11 O 1.21500 * 120.00097 * 359.97438 * 10 9 7 12 12 C 1.48827 * 119.99721 * 180.02562 * 10 9 7 13 13 O 1.21438 * 119.99999 * 0.02562 * 12 10 9 14 14 N 1.34776 * 120.00114 * 179.97438 * 12 10 9 15 15 C 1.47422 * 125.64527 * 0.02809 * 14 12 10 16 16 C 1.54917 * 104.83074 * 204.09182 * 15 14 12 17 17 C 1.55158 * 101.57978 * 322.98980 * 16 15 14 18 18 O 1.42895 * 110.71894 * 277.13923 * 17 16 15 19 19 C 1.50693 * 110.71844 * 154.04477 * 17 16 15 20 20 N 1.34774 * 120.00239 * 154.99791 * 19 17 16 21 21 O 1.21284 * 120.00229 * 334.99694 * 19 17 16 22 22 C 1.47020 * 125.65281 * 179.97438 * 14 12 10 23 23 H 0.97000 * 119.99897 * 0.02562 * 1 2 3 24 24 H 0.96992 * 119.99953 * 0.02562 * 9 7 2 25 25 H 1.08998 * 110.36873 * 85.25268 * 15 14 12 26 26 H 1.09005 * 110.36491 * 322.92676 * 15 14 12 27 27 H 1.08998 * 111.00524 * 81.06438 * 16 15 14 28 28 H 1.08996 * 111.00376 * 204.87436 * 16 15 14 29 29 H 0.96695 * 114.00110 * 180.02562 * 18 17 16 30 30 H 0.96998 * 120.00104 * 0.02562 * 20 19 17 31 31 H 0.96995 * 120.00577 * 179.97438 * 20 19 17 32 32 H 1.09000 * 109.88493 * 59.55540 * 22 14 12 33 33 H 1.09003 * 109.87996 * 298.39630 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.0979 1.6964 -1.2125 5 1 1.2792 2.7465 -0.0006 6 1 3.0979 1.6965 1.2125 7 6 2.0081 -1.2088 0.0005 8 1 3.0881 -1.2088 0.0010 9 7 1.3275 -2.3877 0.0016 10 6 2.0014 -3.5549 0.0026 11 8 3.2164 -3.5548 0.0022 12 6 1.2573 -4.8437 0.0032 13 8 0.0429 -4.8437 0.0023 14 7 1.9311 -6.0110 0.0037 15 6 3.3982 -6.1560 0.0044 16 6 3.6586 -7.5556 -0.6065 17 6 2.4783 -8.3753 -0.0213 18 8 2.7827 -8.8275 1.2996 19 6 2.1419 -9.5396 -0.9170 20 7 1.5399 -10.6315 -0.4054 21 8 2.4130 -9.4941 -2.0983 22 6 1.3250 -7.3504 0.0049 23 1 -0.4850 0.8401 -0.0004 24 1 0.3576 -2.3876 0.0016 25 1 3.7836 -6.1090 1.0229 26 1 3.8562 -5.3821 -0.6116 27 1 3.6093 -7.5222 -1.6949 28 1 4.6161 -7.9555 -0.2730 29 1 2.0771 -9.3455 1.7104 30 1 1.3227 -10.6678 0.5392 31 1 1.3230 -11.3807 -0.9820 32 1 0.6986 -7.4746 -0.8785 33 1 0.7284 -7.4865 0.9069 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383456027.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:17 Heat of formation + Delta-G solvation = -175.932428 kcal Electronic energy + Delta-G solvation = -20973.733249 eV Core-core repulsion = 17419.571077 eV Total energy + Delta-G solvation = -3554.162172 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.01052 -40.94626 -39.28877 -38.55134 -36.98069 -36.10731 -34.53922 -33.49150 -32.05902 -30.20984 -27.99606 -26.20554 -23.79624 -23.45740 -21.27274 -20.87471 -20.11894 -19.76376 -18.59132 -17.91155 -17.84270 -17.15301 -16.83243 -16.80328 -15.88440 -15.78757 -15.61151 -15.32623 -15.03866 -14.99233 -14.56041 -14.13846 -13.75210 -13.66831 -13.09060 -12.96260 -12.87953 -12.56784 -12.47100 -12.19069 -12.11296 -11.90278 -11.64107 -10.88225 -10.81726 -10.28106 -10.16608 -9.86832 -8.65623 -6.10220 0.54433 1.20754 1.40767 1.49379 1.51281 1.61025 2.21905 2.29350 2.34573 2.87976 2.95858 3.14789 3.23354 3.33093 3.81329 3.94728 4.07263 4.19004 4.37232 4.50847 4.72603 4.87182 5.05762 5.15641 5.26004 5.68053 5.74988 6.06447 6.12905 6.29213 6.59372 6.69231 6.93387 7.11911 7.26660 7.79064 8.50100 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.045386 B = 0.003994 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.780489 B = 7009.141949 C = 7246.370721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.004 4.004 3 Si 1.011 2.989 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.344 4.344 8 H 0.101 0.899 9 N -0.510 5.510 10 C 0.393 3.607 11 O -0.602 6.602 12 C 0.529 3.471 13 O -0.567 6.567 14 N -0.592 5.592 15 C 0.107 3.893 16 C -0.106 4.106 17 C 0.119 3.881 18 O -0.531 6.531 19 C 0.513 3.487 20 N -0.822 5.822 21 O -0.569 6.569 22 C 0.089 3.911 23 H 0.289 0.711 24 H 0.400 0.600 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.399 0.601 30 H 0.419 0.581 31 H 0.416 0.584 32 H 0.073 0.927 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 -18.861 3.141 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.209 4.209 3 Si 0.831 3.169 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.474 4.474 8 H 0.119 0.881 9 N -0.144 5.144 10 C 0.178 3.822 11 O -0.491 6.491 12 C 0.315 3.685 13 O -0.446 6.446 14 N -0.325 5.325 15 C -0.015 4.015 16 C -0.144 4.144 17 C 0.074 3.926 18 O -0.340 6.340 19 C 0.295 3.705 20 N -0.389 5.389 21 O -0.448 6.448 22 C -0.034 4.034 23 H 0.099 0.901 24 H 0.234 0.766 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.113 0.887 28 H 0.137 0.863 29 H 0.251 0.749 30 H 0.251 0.749 31 H 0.249 0.751 32 H 0.092 0.908 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.127 -18.172 2.339 18.587 hybrid contribution -1.196 0.191 0.262 1.239 sum 1.931 -17.980 2.601 18.270 Atomic orbital electron populations 1.69551 1.07872 1.30885 1.45120 1.26551 0.96489 1.03485 0.94348 0.84743 0.77727 0.74718 0.79675 1.18877 1.19182 1.18738 1.19967 0.93760 0.82904 1.50734 0.88089 1.41630 1.10175 1.04680 1.57944 1.19344 0.87926 0.84811 0.90125 1.90508 1.13369 1.86714 1.58546 1.19935 0.86606 0.84896 0.77048 1.90675 1.14398 1.87800 1.51769 1.48039 1.09220 1.04232 1.71027 1.22639 0.78536 0.97780 1.02563 1.22867 0.98273 0.91979 1.01322 1.22056 0.95972 0.90696 0.83902 1.86710 1.46584 1.74401 1.26285 1.20733 0.76934 0.84804 0.88030 1.43582 1.61308 1.18502 1.15463 1.90784 1.54487 1.81566 1.17928 1.22689 0.95640 0.81031 1.04043 0.90095 0.76587 0.90329 0.89373 0.88665 0.86263 0.74913 0.74877 0.75137 0.90825 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.41 13.03 21.77 0.28 -48.12 16 2 C 0.00 -0.23 5.51 85.14 0.47 0.24 16 3 Si 1.01 40.76 29.56 68.60 2.03 42.79 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 7 C -0.34 -19.37 9.67 84.35 0.82 -18.56 16 8 H 0.10 5.79 7.15 -2.91 -0.02 5.77 16 9 N -0.51 -28.31 5.25 -308.88 -1.62 -29.93 16 10 C 0.39 20.48 7.78 87.08 0.68 21.16 16 11 O -0.60 -32.34 13.33 -3.71 -0.05 -32.39 16 12 C 0.53 24.17 7.89 87.08 0.69 24.86 16 13 O -0.57 -27.57 16.80 -3.52 -0.06 -27.63 16 14 N -0.59 -21.37 3.33 -814.08 -2.71 -24.08 16 15 C 0.11 3.44 6.05 86.86 0.53 3.97 16 16 C -0.11 -2.62 6.12 31.99 0.20 -2.43 16 17 C 0.12 2.42 1.22 -10.36 -0.01 2.41 16 18 O -0.53 -7.80 13.00 -148.98 -1.94 -9.74 16 19 C 0.51 9.88 6.98 87.66 0.61 10.49 16 20 N -0.82 -6.91 8.80 -173.54 -1.53 -8.44 16 21 O -0.57 -16.29 16.66 -3.04 -0.05 -16.34 16 22 C 0.09 2.34 6.22 86.73 0.54 2.88 16 23 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 24 H 0.40 22.49 7.35 -92.71 -0.68 21.81 16 25 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.09 3.33 6.15 -2.38 -0.01 3.32 16 27 H 0.09 2.59 7.23 -2.39 -0.02 2.57 16 28 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.40 1.58 7.55 -74.06 -0.56 1.02 16 30 H 0.42 0.34 7.26 -92.71 -0.67 -0.33 16 31 H 0.42 2.68 8.93 -92.71 -0.83 1.85 16 32 H 0.07 2.05 7.82 -2.39 -0.02 2.04 16 33 H 0.10 2.26 8.07 -2.39 -0.02 2.24 16 Total: -1.00 -76.26 290.60 -2.65 -78.91 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -1.52 Total: 29.96 kcal Atomic # 6 Polarization: 40.50 SS G_CDS: 4.51 Total: 45.01 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -5.57 Total: -110.58 kcal Atomic # 8 Polarization: -84.00 SS G_CDS: -2.10 Total: -86.10 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -76.26 -2.65 -78.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383456027.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.020 kcal (2) G-P(sol) polarization free energy of solvation -76.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds