Wall clock time and date at job start Mon Mar 30 2020 05:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52989 * 109.47298 * 2 1 4 4 H 1.08998 * 109.47353 * 305.62486 * 3 2 1 5 5 S 1.81003 * 109.47187 * 65.62592 * 3 2 1 6 6 C 1.76205 * 100.00061 * 188.42765 * 5 3 2 7 7 N 1.31658 * 125.41827 * 355.24165 * 6 5 3 8 8 C 1.34548 * 110.08042 * 179.74507 * 7 6 5 9 9 N 1.31030 * 126.01443 * 180.28002 * 8 7 6 10 10 N 1.38314 * 107.96494 * 0.44995 * 8 7 6 11 11 H 0.96999 * 126.95978 * 179.84060 * 10 8 7 12 12 N 1.36853 * 125.41816 * 175.26843 * 6 5 3 13 13 H 0.97002 * 126.64472 * 359.95929 * 12 6 5 14 14 C 1.50709 * 109.47387 * 185.62493 * 3 2 1 15 15 O 1.21290 * 119.99927 * 265.00430 * 14 3 2 16 16 N 1.34769 * 119.99916 * 84.99692 * 14 3 2 17 17 C 1.37101 * 120.00345 * 180.02562 * 16 14 3 18 18 H 1.08008 * 119.99468 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00648 * 180.02562 * 17 16 14 20 20 N 1.31401 * 120.00148 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99666 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47043 * 90.00479 * 21 19 17 23 23 H 1.48497 * 109.47279 * 210.00343 * 21 19 17 24 24 H 1.48503 * 109.47598 * 330.00387 * 21 19 17 25 25 H 1.09007 * 109.46907 * 294.82459 * 1 2 3 26 26 H 1.08994 * 109.47195 * 54.82737 * 1 2 3 27 27 H 1.09004 * 109.47308 * 174.82984 * 1 2 3 28 28 H 1.09001 * 109.46955 * 239.99705 * 2 1 3 29 29 H 1.09001 * 109.47281 * 120.00201 * 2 1 3 30 30 H 0.96999 * 120.00587 * 0.18959 * 9 8 7 31 31 H 0.97001 * 120.00446 * 0.02562 * 16 14 3 32 32 H 0.97004 * 120.00404 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5968 1.9845 -0.8353 5 16 1.5772 2.2460 1.5544 6 6 2.0427 3.9062 1.1910 7 7 2.6531 4.3049 0.0948 8 6 2.8552 5.6344 0.1362 9 7 3.4314 6.3555 -0.7939 10 7 2.3513 6.1055 1.3350 11 1 2.3547 7.0234 1.6487 12 7 1.8277 4.9861 2.0037 13 1 1.3970 4.9800 2.8728 14 6 3.5407 1.4447 -0.1393 15 8 4.2413 1.5028 0.8491 16 7 4.1040 1.3820 -1.3620 17 6 5.4691 1.3835 -1.4887 18 1 6.0931 1.4346 -0.6086 19 6 6.0500 1.3194 -2.7493 20 7 7.3584 1.3204 -2.8707 21 14 4.9709 1.2304 -4.2714 22 1 4.6758 2.6048 -4.7502 23 1 5.6790 0.4765 -5.3369 24 1 3.6997 0.5391 -3.9374 25 1 -0.3633 0.4315 0.9328 26 1 -0.3633 0.5919 -0.8400 27 1 -0.3634 -1.0235 -0.0926 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.7547 5.9326 -1.6049 31 1 3.5437 1.3357 -2.1524 32 1 7.7640 1.2753 -3.7507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390218963.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:04 Heat of formation + Delta-G solvation = 81.431453 kcal Electronic energy + Delta-G solvation = -18812.691374 eV Core-core repulsion = 15744.734959 eV Total energy + Delta-G solvation = -3067.956414 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22133 -38.52733 -34.51907 -33.93902 -33.84020 -32.52090 -31.58367 -29.28071 -28.12784 -24.50752 -23.51516 -21.80645 -21.07884 -19.50573 -19.32745 -18.47772 -16.61160 -16.22926 -16.15941 -15.50847 -15.30283 -14.97999 -14.81942 -13.97042 -13.67168 -13.01224 -12.88000 -12.54372 -12.20560 -11.84772 -11.38264 -11.33683 -11.20477 -11.07806 -10.68452 -10.62636 -10.55482 -10.36666 -9.94030 -9.53129 -9.16969 -8.57273 -8.14700 -7.85141 -7.39513 -6.28075 -3.77974 0.83437 1.47438 1.91925 2.10099 3.05292 3.12682 3.19717 3.66671 3.72981 4.14054 4.18751 4.44384 4.84252 5.04273 5.15032 5.25828 5.36749 5.48280 5.69790 5.82906 5.92309 5.96038 5.96786 6.02055 6.21990 6.78058 7.57233 7.77797 7.99931 8.15825 8.59125 8.89379 8.96701 9.44481 9.81325 10.84774 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.008002 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.852345 B = 3498.365905 C = 4600.414989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 C -0.093 4.093 4 H 0.113 0.887 5 S 0.065 5.935 6 C 0.365 3.635 7 N -0.561 5.561 8 C 0.560 3.440 9 N -0.773 5.773 10 N -0.539 5.539 11 H 0.447 0.553 12 N -0.503 5.503 13 H 0.446 0.554 14 C 0.463 3.537 15 O -0.562 6.562 16 N -0.570 5.570 17 C -0.298 4.298 18 H 0.119 0.881 19 C 0.044 3.956 20 N -0.878 5.878 21 Si 0.877 3.123 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.357 0.643 31 H 0.370 0.630 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.851 1.112 7.428 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.144 4.144 3 C -0.226 4.226 4 H 0.131 0.869 5 S 0.294 5.706 6 C -0.020 4.020 7 N -0.303 5.303 8 C 0.187 3.813 9 N -0.420 5.420 10 N -0.285 5.285 11 H 0.295 0.705 12 N -0.238 5.238 13 H 0.294 0.706 14 C 0.246 3.754 15 O -0.445 6.445 16 N -0.207 5.207 17 C -0.427 4.427 18 H 0.137 0.863 19 C -0.159 4.159 20 N -0.518 5.518 21 Si 0.703 3.297 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.195 1.195 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.176 0.824 31 H 0.203 0.797 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.148 1.450 8.183 19.056 hybrid contribution -0.382 0.649 -1.579 1.749 sum -17.530 2.099 6.604 18.850 Atomic orbital electron populations 1.21903 0.94663 1.02219 1.02514 1.21393 0.96345 0.92006 1.04611 1.23854 1.00766 1.00317 0.97668 0.86874 1.85124 1.72631 0.88937 1.23936 1.26087 0.92400 0.94440 0.89055 1.72282 1.25227 1.11243 1.21555 1.20331 0.90405 0.84324 0.86227 1.69557 1.27863 1.36441 1.08185 1.44693 1.64185 1.02474 1.17148 0.70508 1.44546 1.60080 0.99241 1.19917 0.70604 1.18968 0.87192 0.84680 0.84552 1.90599 1.62278 1.54748 1.36852 1.41971 1.07673 1.65411 1.05623 1.19403 0.79707 1.47545 0.96012 0.86316 1.25013 0.95711 0.97537 0.97684 1.69614 1.08764 1.48975 1.24461 0.86708 0.80295 0.79095 0.83557 1.19414 1.20210 1.19477 0.91979 0.92145 0.91988 0.89265 0.90105 0.82418 0.79682 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.66 37.16 0.36 -1.08 16 2 C -0.10 -1.32 5.37 -26.74 -0.14 -1.46 16 3 C -0.09 -1.48 2.07 -27.88 -0.06 -1.54 16 4 H 0.11 1.72 8.11 -51.92 -0.42 1.29 16 5 S 0.06 0.88 19.98 -107.50 -2.15 -1.26 16 6 C 0.36 5.80 8.14 -87.73 -0.71 5.09 16 7 N -0.56 -11.01 9.79 -13.57 -0.13 -11.15 16 8 C 0.56 10.65 9.37 -322.10 -3.02 7.64 16 9 N -0.77 -15.68 14.18 29.86 0.42 -15.26 16 10 N -0.54 -7.50 7.63 29.86 0.23 -7.28 16 11 H 0.45 4.72 8.96 -182.29 -1.63 3.09 16 12 N -0.50 -6.10 7.53 30.79 0.23 -5.86 16 13 H 0.45 3.34 8.96 -182.28 -1.63 1.71 16 14 C 0.46 10.33 5.86 -10.98 -0.06 10.27 16 15 O -0.56 -14.76 15.71 5.55 0.09 -14.67 16 16 N -0.57 -13.68 5.09 -10.96 -0.06 -13.73 16 17 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 18 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 19 C 0.04 1.22 5.50 -17.47 -0.10 1.12 16 20 N -0.88 -26.02 13.96 55.50 0.77 -25.25 16 21 Si 0.88 19.82 27.74 -169.99 -4.71 15.10 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.27 -5.46 6.52 56.52 0.37 -5.10 16 25 H 0.06 0.53 7.35 -51.93 -0.38 0.15 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.36 7.52 8.92 -40.82 -0.36 7.16 16 31 H 0.37 7.98 5.76 -40.82 -0.24 7.74 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 294.81 15.07 4.44 4.44 Total: -1.00 -36.14 294.81 -10.67 -46.81 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -5.92 Total: 16.72 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: -3.89 Total: 11.39 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: 1.47 Total: -78.52 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.09 Total: -14.67 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.71 Total: 15.10 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.15 Total: -1.26 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -36.14 -10.67 -46.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390218963.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.238 kcal (2) G-P(sol) polarization free energy of solvation -36.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds