Wall clock time and date at job start Mon Mar 30 2020 05:32:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52989 * 109.47298 * 2 1
4 4 H 1.08998 * 109.47353 * 305.62486 * 3 2 1
5 5 S 1.81003 * 109.47187 * 65.62592 * 3 2 1
6 6 C 1.76205 * 100.00061 * 188.42765 * 5 3 2
7 7 N 1.31658 * 125.41827 * 355.24165 * 6 5 3
8 8 C 1.34548 * 110.08042 * 179.74507 * 7 6 5
9 9 N 1.31030 * 126.01443 * 180.28002 * 8 7 6
10 10 N 1.38314 * 107.96494 * 0.44995 * 8 7 6
11 11 H 0.96999 * 126.95978 * 179.84060 * 10 8 7
12 12 N 1.36853 * 125.41816 * 175.26843 * 6 5 3
13 13 H 0.97002 * 126.64472 * 359.95929 * 12 6 5
14 14 C 1.50709 * 109.47387 * 185.62493 * 3 2 1
15 15 O 1.21290 * 119.99927 * 265.00430 * 14 3 2
16 16 N 1.34769 * 119.99916 * 84.99692 * 14 3 2
17 17 C 1.37101 * 120.00345 * 180.02562 * 16 14 3
18 18 H 1.08008 * 119.99468 * 0.02562 * 17 16 14
19 19 C 1.38947 * 120.00648 * 180.02562 * 17 16 14
20 20 N 1.31401 * 120.00148 * 180.02562 * 19 17 16
21 21 Si 1.86798 * 119.99666 * 359.97438 * 19 17 16
22 22 H 1.48502 * 109.47043 * 90.00479 * 21 19 17
23 23 H 1.48497 * 109.47279 * 210.00343 * 21 19 17
24 24 H 1.48503 * 109.47598 * 330.00387 * 21 19 17
25 25 H 1.09007 * 109.46907 * 294.82459 * 1 2 3
26 26 H 1.08994 * 109.47195 * 54.82737 * 1 2 3
27 27 H 1.09004 * 109.47308 * 174.82984 * 1 2 3
28 28 H 1.09001 * 109.46955 * 239.99705 * 2 1 3
29 29 H 1.09001 * 109.47281 * 120.00201 * 2 1 3
30 30 H 0.96999 * 120.00587 * 0.18959 * 9 8 7
31 31 H 0.97001 * 120.00446 * 0.02562 * 16 14 3
32 32 H 0.97004 * 120.00404 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.5968 1.9845 -0.8353
5 16 1.5772 2.2460 1.5544
6 6 2.0427 3.9062 1.1910
7 7 2.6531 4.3049 0.0948
8 6 2.8552 5.6344 0.1362
9 7 3.4314 6.3555 -0.7939
10 7 2.3513 6.1055 1.3350
11 1 2.3547 7.0234 1.6487
12 7 1.8277 4.9861 2.0037
13 1 1.3970 4.9800 2.8728
14 6 3.5407 1.4447 -0.1393
15 8 4.2413 1.5028 0.8491
16 7 4.1040 1.3820 -1.3620
17 6 5.4691 1.3835 -1.4887
18 1 6.0931 1.4346 -0.6086
19 6 6.0500 1.3194 -2.7493
20 7 7.3584 1.3204 -2.8707
21 14 4.9709 1.2304 -4.2714
22 1 4.6758 2.6048 -4.7502
23 1 5.6790 0.4765 -5.3369
24 1 3.6997 0.5391 -3.9374
25 1 -0.3633 0.4315 0.9328
26 1 -0.3633 0.5919 -0.8400
27 1 -0.3634 -1.0235 -0.0926
28 1 1.8933 -0.5139 -0.8900
29 1 1.8934 -0.5139 0.8900
30 1 3.7547 5.9326 -1.6049
31 1 3.5437 1.3357 -2.1524
32 1 7.7640 1.2753 -3.7507
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000390218963.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:32:04
Heat of formation + Delta-G solvation = 81.431453 kcal
Electronic energy + Delta-G solvation = -18812.691374 eV
Core-core repulsion = 15744.734959 eV
Total energy + Delta-G solvation = -3067.956414 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.084 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.22133 -38.52733 -34.51907 -33.93902 -33.84020 -32.52090 -31.58367 -29.28071
-28.12784 -24.50752 -23.51516 -21.80645 -21.07884 -19.50573 -19.32745 -18.47772
-16.61160 -16.22926 -16.15941 -15.50847 -15.30283 -14.97999 -14.81942 -13.97042
-13.67168 -13.01224 -12.88000 -12.54372 -12.20560 -11.84772 -11.38264 -11.33683
-11.20477 -11.07806 -10.68452 -10.62636 -10.55482 -10.36666 -9.94030 -9.53129
-9.16969 -8.57273 -8.14700 -7.85141 -7.39513 -6.28075 -3.77974 0.83437
1.47438 1.91925 2.10099 3.05292 3.12682 3.19717 3.66671 3.72981
4.14054 4.18751 4.44384 4.84252 5.04273 5.15032 5.25828 5.36749
5.48280 5.69790 5.82906 5.92309 5.96038 5.96786 6.02055 6.21990
6.78058 7.57233 7.77797 7.99931 8.15825 8.59125 8.89379 8.96701
9.44481 9.81325 10.84774
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.015399 B = 0.008002 C = 0.006085
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1817.852345 B = 3498.365905 C = 4600.414989
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.104 4.104
3 C -0.093 4.093
4 H 0.113 0.887
5 S 0.065 5.935
6 C 0.365 3.635
7 N -0.561 5.561
8 C 0.560 3.440
9 N -0.773 5.773
10 N -0.539 5.539
11 H 0.447 0.553
12 N -0.503 5.503
13 H 0.446 0.554
14 C 0.463 3.537
15 O -0.562 6.562
16 N -0.570 5.570
17 C -0.298 4.298
18 H 0.119 0.881
19 C 0.044 3.956
20 N -0.878 5.878
21 Si 0.877 3.123
22 H -0.269 1.269
23 H -0.277 1.277
24 H -0.269 1.269
25 H 0.061 0.939
26 H 0.059 0.941
27 H 0.061 0.939
28 H 0.089 0.911
29 H 0.080 0.920
30 H 0.357 0.643
31 H 0.370 0.630
32 H 0.273 0.727
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.851 1.112 7.428 19.367
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.144 4.144
3 C -0.226 4.226
4 H 0.131 0.869
5 S 0.294 5.706
6 C -0.020 4.020
7 N -0.303 5.303
8 C 0.187 3.813
9 N -0.420 5.420
10 N -0.285 5.285
11 H 0.295 0.705
12 N -0.238 5.238
13 H 0.294 0.706
14 C 0.246 3.754
15 O -0.445 6.445
16 N -0.207 5.207
17 C -0.427 4.427
18 H 0.137 0.863
19 C -0.159 4.159
20 N -0.518 5.518
21 Si 0.703 3.297
22 H -0.194 1.194
23 H -0.202 1.202
24 H -0.195 1.195
25 H 0.080 0.920
26 H 0.079 0.921
27 H 0.080 0.920
28 H 0.107 0.893
29 H 0.099 0.901
30 H 0.176 0.824
31 H 0.203 0.797
32 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -17.148 1.450 8.183 19.056
hybrid contribution -0.382 0.649 -1.579 1.749
sum -17.530 2.099 6.604 18.850
Atomic orbital electron populations
1.21903 0.94663 1.02219 1.02514 1.21393 0.96345 0.92006 1.04611
1.23854 1.00766 1.00317 0.97668 0.86874 1.85124 1.72631 0.88937
1.23936 1.26087 0.92400 0.94440 0.89055 1.72282 1.25227 1.11243
1.21555 1.20331 0.90405 0.84324 0.86227 1.69557 1.27863 1.36441
1.08185 1.44693 1.64185 1.02474 1.17148 0.70508 1.44546 1.60080
0.99241 1.19917 0.70604 1.18968 0.87192 0.84680 0.84552 1.90599
1.62278 1.54748 1.36852 1.41971 1.07673 1.65411 1.05623 1.19403
0.79707 1.47545 0.96012 0.86316 1.25013 0.95711 0.97537 0.97684
1.69614 1.08764 1.48975 1.24461 0.86708 0.80295 0.79095 0.83557
1.19414 1.20210 1.19477 0.91979 0.92145 0.91988 0.89265 0.90105
0.82418 0.79682 0.91596
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.44 9.66 37.16 0.36 -1.08 16
2 C -0.10 -1.32 5.37 -26.74 -0.14 -1.46 16
3 C -0.09 -1.48 2.07 -27.88 -0.06 -1.54 16
4 H 0.11 1.72 8.11 -51.92 -0.42 1.29 16
5 S 0.06 0.88 19.98 -107.50 -2.15 -1.26 16
6 C 0.36 5.80 8.14 -87.73 -0.71 5.09 16
7 N -0.56 -11.01 9.79 -13.57 -0.13 -11.15 16
8 C 0.56 10.65 9.37 -322.10 -3.02 7.64 16
9 N -0.77 -15.68 14.18 29.86 0.42 -15.26 16
10 N -0.54 -7.50 7.63 29.86 0.23 -7.28 16
11 H 0.45 4.72 8.96 -182.29 -1.63 3.09 16
12 N -0.50 -6.10 7.53 30.79 0.23 -5.86 16
13 H 0.45 3.34 8.96 -182.28 -1.63 1.71 16
14 C 0.46 10.33 5.86 -10.98 -0.06 10.27 16
15 O -0.56 -14.76 15.71 5.55 0.09 -14.67 16
16 N -0.57 -13.68 5.09 -10.96 -0.06 -13.73 16
17 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16
18 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16
19 C 0.04 1.22 5.50 -17.47 -0.10 1.12 16
20 N -0.88 -26.02 13.96 55.50 0.77 -25.25 16
21 Si 0.88 19.82 27.74 -169.99 -4.71 15.10 16
22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16
23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
24 H -0.27 -5.46 6.52 56.52 0.37 -5.10 16
25 H 0.06 0.53 7.35 -51.93 -0.38 0.15 16
26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16
29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16
30 H 0.36 7.52 8.92 -40.82 -0.36 7.16 16
31 H 0.37 7.98 5.76 -40.82 -0.24 7.74 16
32 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16
LS Contribution 294.81 15.07 4.44 4.44
Total: -1.00 -36.14 294.81 -10.67 -46.81
By element:
Atomic # 1 Polarization: 22.63 SS G_CDS: -5.92 Total: 16.72 kcal
Atomic # 6 Polarization: 15.28 SS G_CDS: -3.89 Total: 11.39 kcal
Atomic # 7 Polarization: -79.99 SS G_CDS: 1.47 Total: -78.52 kcal
Atomic # 8 Polarization: -14.76 SS G_CDS: 0.09 Total: -14.67 kcal
Atomic # 14 Polarization: 19.82 SS G_CDS: -4.71 Total: 15.10 kcal
Atomic # 16 Polarization: 0.88 SS G_CDS: -2.15 Total: -1.26 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -36.14 -10.67 -46.81 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000390218963.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 128.238 kcal
(2) G-P(sol) polarization free energy of solvation -36.139 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.099 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.667 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.807 kcal
(6) G-S(sol) free energy of system = (1) + (5) 81.431 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds