Wall clock time and date at job start Mon Mar 30 2020 05:32:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52989 * 109.47298 * 2 1
4 4 H 1.08998 * 109.47353 * 305.62486 * 3 2 1
5 5 S 1.81003 * 109.47187 * 65.62592 * 3 2 1
6 6 C 1.76205 * 100.00061 * 188.42765 * 5 3 2
7 7 N 1.31658 * 125.41827 * 355.24165 * 6 5 3
8 8 C 1.34548 * 110.08042 * 179.74507 * 7 6 5
9 9 N 1.31030 * 126.01443 * 180.28002 * 8 7 6
10 10 N 1.38314 * 107.96494 * 0.44995 * 8 7 6
11 11 H 0.96999 * 126.95978 * 179.84060 * 10 8 7
12 12 N 1.36853 * 125.41816 * 175.26843 * 6 5 3
13 13 H 0.97002 * 126.64472 * 359.95929 * 12 6 5
14 14 C 1.50709 * 109.47387 * 185.62493 * 3 2 1
15 15 O 1.21290 * 119.99927 * 265.00430 * 14 3 2
16 16 N 1.34769 * 119.99916 * 84.99692 * 14 3 2
17 17 C 1.37101 * 120.00345 * 180.02562 * 16 14 3
18 18 H 1.08008 * 119.99468 * 0.02562 * 17 16 14
19 19 C 1.38947 * 120.00648 * 180.02562 * 17 16 14
20 20 N 1.31401 * 120.00148 * 180.02562 * 19 17 16
21 21 Si 1.86798 * 119.99666 * 359.97438 * 19 17 16
22 22 H 1.48502 * 109.47043 * 90.00479 * 21 19 17
23 23 H 1.48497 * 109.47279 * 210.00343 * 21 19 17
24 24 H 1.48503 * 109.47598 * 330.00387 * 21 19 17
25 25 H 1.09007 * 109.46907 * 294.82459 * 1 2 3
26 26 H 1.08994 * 109.47195 * 54.82737 * 1 2 3
27 27 H 1.09004 * 109.47308 * 174.82984 * 1 2 3
28 28 H 1.09001 * 109.46955 * 239.99705 * 2 1 3
29 29 H 1.09001 * 109.47281 * 120.00201 * 2 1 3
30 30 H 0.96999 * 120.00587 * 0.18959 * 9 8 7
31 31 H 0.97001 * 120.00446 * 0.02562 * 16 14 3
32 32 H 0.97004 * 120.00404 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.5968 1.9845 -0.8353
5 16 1.5772 2.2460 1.5544
6 6 2.0427 3.9062 1.1910
7 7 2.6531 4.3049 0.0948
8 6 2.8552 5.6344 0.1362
9 7 3.4314 6.3555 -0.7939
10 7 2.3513 6.1055 1.3350
11 1 2.3547 7.0234 1.6487
12 7 1.8277 4.9861 2.0037
13 1 1.3970 4.9800 2.8728
14 6 3.5407 1.4447 -0.1393
15 8 4.2413 1.5028 0.8491
16 7 4.1040 1.3820 -1.3620
17 6 5.4691 1.3835 -1.4887
18 1 6.0931 1.4346 -0.6086
19 6 6.0500 1.3194 -2.7493
20 7 7.3584 1.3204 -2.8707
21 14 4.9709 1.2304 -4.2714
22 1 4.6758 2.6048 -4.7502
23 1 5.6790 0.4765 -5.3369
24 1 3.6997 0.5391 -3.9374
25 1 -0.3633 0.4315 0.9328
26 1 -0.3633 0.5919 -0.8400
27 1 -0.3634 -1.0235 -0.0926
28 1 1.8933 -0.5139 -0.8900
29 1 1.8934 -0.5139 0.8900
30 1 3.7547 5.9326 -1.6049
31 1 3.5437 1.3357 -2.1524
32 1 7.7640 1.2753 -3.7507
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000390218963.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:32:03
Heat of formation + Delta-G solvation = 54.007271 kcal
Electronic energy + Delta-G solvation = -18813.880576 eV
Core-core repulsion = 15744.734959 eV
Total energy + Delta-G solvation = -3069.145616 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.084 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-42.49921 -40.35598 -36.06590 -35.60622 -35.16377 -33.81641 -33.65511 -30.57739
-29.40792 -26.44381 -24.72094 -22.91757 -22.39624 -21.33212 -20.59265 -20.39731
-18.02889 -17.73458 -17.49675 -16.94963 -16.61150 -16.49393 -16.29929 -15.55601
-15.35781 -14.73190 -14.30528 -13.87841 -13.85852 -13.05657 -12.86706 -12.53994
-12.45572 -12.40604 -12.19849 -11.99423 -11.91810 -11.87133 -11.54468 -11.45194
-10.60990 -10.45217 -10.22451 -8.98223 -8.74210 -8.40690 -5.99417 -0.34448
0.19172 0.65316 0.95153 1.27077 1.35521 1.41619 1.96816 2.22501
2.28066 2.80981 2.98258 3.15490 3.74709 3.87626 3.91317 4.11917
4.44738 4.50726 4.67160 4.72813 4.87392 5.16231 5.19298 5.47416
5.53018 5.58704 5.94891 6.55721 6.60350 6.77887 6.87928 7.38642
7.45455 7.92553 8.76852
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.015399 B = 0.008002 C = 0.006085
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1817.852345 B = 3498.365905 C = 4600.414989
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.103 4.103
3 C -0.098 4.098
4 H 0.129 0.871
5 S 0.132 5.868
6 C 0.348 3.652
7 N -0.611 5.611
8 C 0.549 3.451
9 N -0.804 5.804
10 N -0.522 5.522
11 H 0.463 0.537
12 N -0.471 5.471
13 H 0.470 0.530
14 C 0.470 3.530
15 O -0.607 6.607
16 N -0.576 5.576
17 C -0.316 4.316
18 H 0.056 0.944
19 C -0.012 4.012
20 N -0.933 5.933
21 Si 0.955 3.045
22 H -0.266 1.266
23 H -0.271 1.271
24 H -0.227 1.227
25 H 0.071 0.929
26 H 0.070 0.930
27 H 0.080 0.920
28 H 0.089 0.911
29 H 0.076 0.924
30 H 0.345 0.655
31 H 0.386 0.614
32 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.800 0.505 7.615 23.097
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.142 4.142
3 C -0.232 4.232
4 H 0.147 0.853
5 S 0.361 5.639
6 C -0.036 4.036
7 N -0.356 5.356
8 C 0.175 3.825
9 N -0.453 5.453
10 N -0.268 5.268
11 H 0.315 0.685
12 N -0.208 5.208
13 H 0.323 0.677
14 C 0.255 3.745
15 O -0.492 6.492
16 N -0.215 5.215
17 C -0.445 4.445
18 H 0.074 0.926
19 C -0.211 4.211
20 N -0.574 5.574
21 Si 0.775 3.225
22 H -0.191 1.191
23 H -0.196 1.196
24 H -0.150 1.150
25 H 0.090 0.910
26 H 0.089 0.911
27 H 0.099 0.901
28 H 0.107 0.893
29 H 0.094 0.906
30 H 0.161 0.839
31 H 0.221 0.779
32 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -21.181 0.854 8.493 22.836
hybrid contribution 0.835 0.819 -1.362 1.796
sum -20.345 1.673 7.131 21.624
Atomic orbital electron populations
1.21885 0.91333 1.03870 1.03519 1.21484 0.99076 0.89142 1.04529
1.23885 0.95419 1.03555 1.00312 0.85278 1.84898 1.70855 0.86469
1.21639 1.26610 0.91848 0.96237 0.88906 1.72203 1.27761 1.11831
1.23764 1.20575 0.90117 0.84669 0.87133 1.69588 1.30454 1.36618
1.08630 1.44645 1.62780 1.03509 1.15912 0.68531 1.44545 1.58367
0.97849 1.20065 0.67687 1.20095 0.89970 0.81240 0.83213 1.90577
1.64605 1.55705 1.38269 1.41803 1.05996 1.66611 1.07067 1.18930
0.81597 1.49465 0.94537 0.92624 1.26007 0.97312 0.96296 1.01465
1.69789 1.11359 1.50455 1.25782 0.85504 0.79674 0.79596 0.77701
1.19139 1.19610 1.14967 0.90984 0.91145 0.90078 0.89254 0.90565
0.83866 0.77919 0.91249
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.08 9.66 71.98 0.70 -1.38 16
2 C -0.10 -2.29 5.37 30.59 0.16 -2.12 16
3 C -0.10 -2.93 2.07 29.85 0.06 -2.87 16
4 H 0.13 3.53 8.11 -2.40 -0.02 3.51 16
5 S 0.13 3.23 19.98 -56.49 -1.13 2.10 16
6 C 0.35 10.36 8.14 179.34 1.46 11.82 16
7 N -0.61 -23.61 9.79 -196.85 -1.93 -25.54 16
8 C 0.55 20.72 9.37 261.24 2.45 23.17 16
9 N -0.80 -33.32 14.18 -59.44 -0.84 -34.16 16
10 N -0.52 -13.61 7.63 -59.44 -0.45 -14.06 16
11 H 0.46 8.85 8.96 -213.06 -1.91 6.94 16
12 N -0.47 -10.13 7.53 -56.50 -0.43 -10.56 16
13 H 0.47 5.27 8.96 -213.05 -1.91 3.36 16
14 C 0.47 20.95 5.86 87.66 0.51 21.47 16
15 O -0.61 -32.64 15.71 -3.06 -0.05 -32.68 16
16 N -0.58 -27.84 5.09 -306.98 -1.56 -29.40 16
17 C -0.32 -18.89 10.16 84.04 0.85 -18.03 16
18 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16
19 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16
20 N -0.93 -57.79 13.96 21.66 0.30 -57.48 16
21 Si 0.95 40.65 27.74 68.60 1.90 42.55 16
22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16
23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16
24 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16
25 H 0.07 0.87 7.35 -2.38 -0.02 0.86 16
26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16
27 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16
28 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16
29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16
30 H 0.34 15.14 8.92 -92.71 -0.83 14.31 16
31 H 0.39 16.04 5.76 -92.71 -0.53 15.51 16
32 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16
Total: -1.00 -85.40 294.81 -1.54 -86.95
By element:
Atomic # 1 Polarization: 44.50 SS G_CDS: -4.03 Total: 40.47 kcal
Atomic # 6 Polarization: 25.16 SS G_CDS: 6.66 Total: 31.82 kcal
Atomic # 7 Polarization: -166.30 SS G_CDS: -4.91 Total: -171.21 kcal
Atomic # 8 Polarization: -32.64 SS G_CDS: -0.05 Total: -32.68 kcal
Atomic # 14 Polarization: 40.65 SS G_CDS: 1.90 Total: 42.55 kcal
Atomic # 16 Polarization: 3.23 SS G_CDS: -1.13 Total: 2.10 kcal
Total: -85.40 -1.54 -86.95 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000390218963.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 140.953 kcal
(2) G-P(sol) polarization free energy of solvation -85.401 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.552 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.545 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.946 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.007 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds