Wall clock time and date at job start Mon Mar 30 2020 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52989 * 109.47298 * 2 1 4 4 H 1.08998 * 109.47353 * 305.62486 * 3 2 1 5 5 S 1.81003 * 109.47187 * 65.62592 * 3 2 1 6 6 C 1.76205 * 100.00061 * 188.42765 * 5 3 2 7 7 N 1.31658 * 125.41827 * 355.24165 * 6 5 3 8 8 C 1.34548 * 110.08042 * 179.74507 * 7 6 5 9 9 N 1.31030 * 126.01443 * 180.28002 * 8 7 6 10 10 N 1.38314 * 107.96494 * 0.44995 * 8 7 6 11 11 H 0.96999 * 126.95978 * 179.84060 * 10 8 7 12 12 N 1.36853 * 125.41816 * 175.26843 * 6 5 3 13 13 H 0.97002 * 126.64472 * 359.95929 * 12 6 5 14 14 C 1.50709 * 109.47387 * 185.62493 * 3 2 1 15 15 O 1.21290 * 119.99927 * 265.00430 * 14 3 2 16 16 N 1.34769 * 119.99916 * 84.99692 * 14 3 2 17 17 C 1.37101 * 120.00345 * 180.02562 * 16 14 3 18 18 H 1.08008 * 119.99468 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00648 * 180.02562 * 17 16 14 20 20 N 1.31401 * 120.00148 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99666 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47043 * 90.00479 * 21 19 17 23 23 H 1.48497 * 109.47279 * 210.00343 * 21 19 17 24 24 H 1.48503 * 109.47598 * 330.00387 * 21 19 17 25 25 H 1.09007 * 109.46907 * 294.82459 * 1 2 3 26 26 H 1.08994 * 109.47195 * 54.82737 * 1 2 3 27 27 H 1.09004 * 109.47308 * 174.82984 * 1 2 3 28 28 H 1.09001 * 109.46955 * 239.99705 * 2 1 3 29 29 H 1.09001 * 109.47281 * 120.00201 * 2 1 3 30 30 H 0.96999 * 120.00587 * 0.18959 * 9 8 7 31 31 H 0.97001 * 120.00446 * 0.02562 * 16 14 3 32 32 H 0.97004 * 120.00404 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5968 1.9845 -0.8353 5 16 1.5772 2.2460 1.5544 6 6 2.0427 3.9062 1.1910 7 7 2.6531 4.3049 0.0948 8 6 2.8552 5.6344 0.1362 9 7 3.4314 6.3555 -0.7939 10 7 2.3513 6.1055 1.3350 11 1 2.3547 7.0234 1.6487 12 7 1.8277 4.9861 2.0037 13 1 1.3970 4.9800 2.8728 14 6 3.5407 1.4447 -0.1393 15 8 4.2413 1.5028 0.8491 16 7 4.1040 1.3820 -1.3620 17 6 5.4691 1.3835 -1.4887 18 1 6.0931 1.4346 -0.6086 19 6 6.0500 1.3194 -2.7493 20 7 7.3584 1.3204 -2.8707 21 14 4.9709 1.2304 -4.2714 22 1 4.6758 2.6048 -4.7502 23 1 5.6790 0.4765 -5.3369 24 1 3.6997 0.5391 -3.9374 25 1 -0.3633 0.4315 0.9328 26 1 -0.3633 0.5919 -0.8400 27 1 -0.3634 -1.0235 -0.0926 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.7547 5.9326 -1.6049 31 1 3.5437 1.3357 -2.1524 32 1 7.7640 1.2753 -3.7507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390218963.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:03 Heat of formation + Delta-G solvation = 54.007271 kcal Electronic energy + Delta-G solvation = -18813.880576 eV Core-core repulsion = 15744.734959 eV Total energy + Delta-G solvation = -3069.145616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.49921 -40.35598 -36.06590 -35.60622 -35.16377 -33.81641 -33.65511 -30.57739 -29.40792 -26.44381 -24.72094 -22.91757 -22.39624 -21.33212 -20.59265 -20.39731 -18.02889 -17.73458 -17.49675 -16.94963 -16.61150 -16.49393 -16.29929 -15.55601 -15.35781 -14.73190 -14.30528 -13.87841 -13.85852 -13.05657 -12.86706 -12.53994 -12.45572 -12.40604 -12.19849 -11.99423 -11.91810 -11.87133 -11.54468 -11.45194 -10.60990 -10.45217 -10.22451 -8.98223 -8.74210 -8.40690 -5.99417 -0.34448 0.19172 0.65316 0.95153 1.27077 1.35521 1.41619 1.96816 2.22501 2.28066 2.80981 2.98258 3.15490 3.74709 3.87626 3.91317 4.11917 4.44738 4.50726 4.67160 4.72813 4.87392 5.16231 5.19298 5.47416 5.53018 5.58704 5.94891 6.55721 6.60350 6.77887 6.87928 7.38642 7.45455 7.92553 8.76852 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.008002 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.852345 B = 3498.365905 C = 4600.414989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 C -0.098 4.098 4 H 0.129 0.871 5 S 0.132 5.868 6 C 0.348 3.652 7 N -0.611 5.611 8 C 0.549 3.451 9 N -0.804 5.804 10 N -0.522 5.522 11 H 0.463 0.537 12 N -0.471 5.471 13 H 0.470 0.530 14 C 0.470 3.530 15 O -0.607 6.607 16 N -0.576 5.576 17 C -0.316 4.316 18 H 0.056 0.944 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.955 3.045 22 H -0.266 1.266 23 H -0.271 1.271 24 H -0.227 1.227 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.345 0.655 31 H 0.386 0.614 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.800 0.505 7.615 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.232 4.232 4 H 0.147 0.853 5 S 0.361 5.639 6 C -0.036 4.036 7 N -0.356 5.356 8 C 0.175 3.825 9 N -0.453 5.453 10 N -0.268 5.268 11 H 0.315 0.685 12 N -0.208 5.208 13 H 0.323 0.677 14 C 0.255 3.745 15 O -0.492 6.492 16 N -0.215 5.215 17 C -0.445 4.445 18 H 0.074 0.926 19 C -0.211 4.211 20 N -0.574 5.574 21 Si 0.775 3.225 22 H -0.191 1.191 23 H -0.196 1.196 24 H -0.150 1.150 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.161 0.839 31 H 0.221 0.779 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.181 0.854 8.493 22.836 hybrid contribution 0.835 0.819 -1.362 1.796 sum -20.345 1.673 7.131 21.624 Atomic orbital electron populations 1.21885 0.91333 1.03870 1.03519 1.21484 0.99076 0.89142 1.04529 1.23885 0.95419 1.03555 1.00312 0.85278 1.84898 1.70855 0.86469 1.21639 1.26610 0.91848 0.96237 0.88906 1.72203 1.27761 1.11831 1.23764 1.20575 0.90117 0.84669 0.87133 1.69588 1.30454 1.36618 1.08630 1.44645 1.62780 1.03509 1.15912 0.68531 1.44545 1.58367 0.97849 1.20065 0.67687 1.20095 0.89970 0.81240 0.83213 1.90577 1.64605 1.55705 1.38269 1.41803 1.05996 1.66611 1.07067 1.18930 0.81597 1.49465 0.94537 0.92624 1.26007 0.97312 0.96296 1.01465 1.69789 1.11359 1.50455 1.25782 0.85504 0.79674 0.79596 0.77701 1.19139 1.19610 1.14967 0.90984 0.91145 0.90078 0.89254 0.90565 0.83866 0.77919 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.66 71.98 0.70 -1.38 16 2 C -0.10 -2.29 5.37 30.59 0.16 -2.12 16 3 C -0.10 -2.93 2.07 29.85 0.06 -2.87 16 4 H 0.13 3.53 8.11 -2.40 -0.02 3.51 16 5 S 0.13 3.23 19.98 -56.49 -1.13 2.10 16 6 C 0.35 10.36 8.14 179.34 1.46 11.82 16 7 N -0.61 -23.61 9.79 -196.85 -1.93 -25.54 16 8 C 0.55 20.72 9.37 261.24 2.45 23.17 16 9 N -0.80 -33.32 14.18 -59.44 -0.84 -34.16 16 10 N -0.52 -13.61 7.63 -59.44 -0.45 -14.06 16 11 H 0.46 8.85 8.96 -213.06 -1.91 6.94 16 12 N -0.47 -10.13 7.53 -56.50 -0.43 -10.56 16 13 H 0.47 5.27 8.96 -213.05 -1.91 3.36 16 14 C 0.47 20.95 5.86 87.66 0.51 21.47 16 15 O -0.61 -32.64 15.71 -3.06 -0.05 -32.68 16 16 N -0.58 -27.84 5.09 -306.98 -1.56 -29.40 16 17 C -0.32 -18.89 10.16 84.04 0.85 -18.03 16 18 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 19 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 20 N -0.93 -57.79 13.96 21.66 0.30 -57.48 16 21 Si 0.95 40.65 27.74 68.60 1.90 42.55 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 25 H 0.07 0.87 7.35 -2.38 -0.02 0.86 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.34 15.14 8.92 -92.71 -0.83 14.31 16 31 H 0.39 16.04 5.76 -92.71 -0.53 15.51 16 32 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -85.40 294.81 -1.54 -86.95 By element: Atomic # 1 Polarization: 44.50 SS G_CDS: -4.03 Total: 40.47 kcal Atomic # 6 Polarization: 25.16 SS G_CDS: 6.66 Total: 31.82 kcal Atomic # 7 Polarization: -166.30 SS G_CDS: -4.91 Total: -171.21 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.05 Total: -32.68 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.90 Total: 42.55 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -1.13 Total: 2.10 kcal Total: -85.40 -1.54 -86.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390218963.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.953 kcal (2) G-P(sol) polarization free energy of solvation -85.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds