Wall clock time and date at job start Mon Mar 30 2020 05:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47128 * 2 1 4 4 H 1.09007 * 109.46463 * 305.39057 * 3 2 1 5 5 S 1.80991 * 109.47328 * 185.39248 * 3 2 1 6 6 C 1.76198 * 100.00255 * 67.86401 * 5 3 2 7 7 N 1.31654 * 125.41906 * 5.19972 * 6 5 3 8 8 C 1.34552 * 110.08248 * 180.02562 * 7 6 5 9 9 N 1.31034 * 126.01418 * 179.97438 * 8 7 6 10 10 N 1.38309 * 107.96448 * 0.02562 * 8 7 6 11 11 H 0.97002 * 126.96124 * 180.02562 * 10 8 7 12 12 N 1.36866 * 125.42083 * 184.90043 * 6 5 3 13 13 H 0.96998 * 126.63491 * 359.97438 * 12 6 5 14 14 C 1.50696 * 109.47190 * 65.38524 * 3 2 1 15 15 O 1.21293 * 119.99578 * 100.00485 * 14 3 2 16 16 N 1.34778 * 120.00296 * 280.00736 * 14 3 2 17 17 C 1.37094 * 119.99651 * 179.97438 * 16 14 3 18 18 H 1.08001 * 120.00680 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99950 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00064 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00200 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46900 * 60.00507 * 21 19 17 23 23 H 1.48503 * 109.46880 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47155 * 299.99962 * 21 19 17 25 25 H 1.09006 * 109.46760 * 293.29478 * 1 2 3 26 26 H 1.08990 * 109.47508 * 53.29872 * 1 2 3 27 27 H 1.09006 * 109.46703 * 173.30273 * 1 2 3 28 28 H 1.09006 * 109.47407 * 240.00043 * 2 1 3 29 29 H 1.09002 * 109.47615 * 119.99916 * 2 1 3 30 30 H 0.96997 * 120.00087 * 359.97438 * 9 8 7 31 31 H 0.96994 * 120.00001 * 359.97438 * 16 14 3 32 32 H 0.96996 * 120.00576 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5999 1.9834 -0.8379 5 16 3.8428 1.4451 -0.1604 6 6 4.0043 0.8424 -1.8081 7 7 3.0077 0.6066 -2.6355 8 6 3.4804 0.1538 -3.8110 9 7 2.7607 -0.1776 -4.8546 10 7 4.8596 0.0988 -3.7235 11 1 5.4769 -0.1882 -4.4145 12 7 5.1861 0.5504 -2.4337 13 1 6.0763 0.6358 -2.0581 14 6 1.6495 2.1134 1.2917 15 8 2.4603 2.2237 2.1870 16 7 0.3994 2.5909 1.4520 17 6 0.0441 3.2007 2.6274 18 1 0.7658 3.2982 3.4249 19 6 -1.2445 3.6934 2.7926 20 7 -2.1229 3.5744 1.8224 21 14 -1.7289 4.5237 4.3943 22 1 -0.8607 5.7071 4.6207 23 1 -3.1472 4.9572 4.3180 24 1 -1.5641 3.5666 5.5176 25 1 -0.3633 0.4064 0.9440 26 1 -0.3634 0.6141 -0.8238 27 1 -0.3633 -1.0207 -0.1199 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7940 -0.1057 -4.8198 31 1 -0.2489 2.5030 0.7359 32 1 -3.0224 3.9187 1.9375 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390218967.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:07 Heat of formation + Delta-G solvation = 73.756146 kcal Electronic energy + Delta-G solvation = -18386.211308 eV Core-core repulsion = 15317.922067 eV Total energy + Delta-G solvation = -3068.289241 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.45033 -38.63157 -34.27349 -34.16335 -34.06539 -32.61789 -31.21923 -29.49812 -27.67979 -25.03965 -23.51430 -21.81095 -21.40297 -19.67094 -19.33178 -18.05293 -16.74362 -16.41687 -16.23343 -15.61181 -15.23765 -14.86688 -14.57672 -14.15904 -13.80480 -13.19909 -12.51714 -12.44412 -12.02527 -11.65556 -11.42512 -11.18918 -11.00433 -10.99081 -10.80818 -10.50910 -10.46889 -10.35639 -10.24166 -9.62307 -9.37989 -8.65391 -8.13317 -7.93732 -7.63678 -6.54604 -3.96412 0.74767 1.24203 1.87716 2.09363 3.12211 3.20812 3.24422 3.41040 3.67526 3.99503 4.06615 4.66309 4.90810 5.00677 5.29825 5.40369 5.68355 5.70924 5.74197 5.85267 6.02484 6.11400 6.31886 6.49127 6.56809 6.74707 7.43225 7.55638 7.74568 7.87242 8.39953 8.64592 9.00596 9.33958 9.82177 10.61767 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.034219 B = 0.004589 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.052279 B = 6100.530526 C = 6556.049235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C -0.091 4.091 4 H 0.117 0.883 5 S 0.093 5.907 6 C 0.353 3.647 7 N -0.582 5.582 8 C 0.560 3.440 9 N -0.781 5.781 10 N -0.539 5.539 11 H 0.448 0.552 12 N -0.498 5.498 13 H 0.449 0.551 14 C 0.452 3.548 15 O -0.587 6.587 16 N -0.539 5.539 17 C -0.306 4.306 18 H 0.106 0.894 19 C 0.029 3.971 20 N -0.892 5.892 21 Si 0.933 3.067 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.272 1.272 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.353 0.647 31 H 0.397 0.603 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.539 -5.604 -6.490 13.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.145 4.145 3 C -0.224 4.224 4 H 0.135 0.865 5 S 0.323 5.677 6 C -0.030 4.030 7 N -0.327 5.327 8 C 0.187 3.813 9 N -0.429 5.429 10 N -0.284 5.284 11 H 0.296 0.704 12 N -0.232 5.232 13 H 0.298 0.702 14 C 0.236 3.764 15 O -0.473 6.473 16 N -0.174 5.174 17 C -0.436 4.436 18 H 0.124 0.876 19 C -0.175 4.175 20 N -0.531 5.531 21 Si 0.760 3.240 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.197 1.197 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.172 0.828 31 H 0.232 0.768 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.210 -5.442 -6.113 13.879 hybrid contribution -0.756 0.110 -0.392 0.859 sum 10.454 -5.332 -6.505 13.417 Atomic orbital electron populations 1.21896 0.94195 1.01870 1.03477 1.21683 0.97470 0.92263 1.03066 1.23762 0.92705 1.02557 1.03367 0.86458 1.86437 1.09572 1.76400 0.95303 1.26858 0.83617 0.91963 1.00566 1.72265 1.27193 1.30294 1.02905 1.20385 0.81809 0.90112 0.88962 1.69634 1.13099 1.37000 1.23178 1.44745 1.06917 1.71558 1.05185 0.70391 1.44674 1.08370 1.65667 1.04533 0.70235 1.18800 0.84494 0.85711 0.87411 1.90559 1.50637 1.63024 1.43081 1.41859 1.09568 1.49149 1.16821 1.19715 0.96970 1.33330 0.93553 0.87594 1.25318 0.95450 0.97521 0.99180 1.69601 1.05538 1.45501 1.32494 0.85878 0.77456 0.79595 0.81097 1.19721 1.20843 1.19725 0.90946 0.92224 0.92565 0.90426 0.90998 0.82829 0.76784 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.88 37.16 0.33 -2.16 16 2 C -0.11 -1.67 5.27 -26.73 -0.14 -1.81 16 3 C -0.09 -1.58 2.08 -27.88 -0.06 -1.64 16 4 H 0.12 2.02 8.00 -51.91 -0.42 1.60 16 5 S 0.09 1.35 20.98 -107.50 -2.26 -0.90 16 6 C 0.35 4.70 7.87 -87.72 -0.69 4.01 16 7 N -0.58 -9.00 9.09 -13.57 -0.12 -9.12 16 8 C 0.56 8.44 9.37 -322.09 -3.02 5.42 16 9 N -0.78 -12.46 14.18 29.86 0.42 -12.04 16 10 N -0.54 -5.93 7.63 29.86 0.23 -5.70 16 11 H 0.45 3.57 8.96 -182.29 -1.63 1.94 16 12 N -0.50 -4.90 7.53 30.79 0.23 -4.67 16 13 H 0.45 2.64 8.96 -182.29 -1.63 1.01 16 14 C 0.45 10.02 6.58 -10.99 -0.07 9.95 16 15 O -0.59 -14.74 15.62 5.55 0.09 -14.66 16 16 N -0.54 -12.85 4.21 -10.96 -0.05 -12.90 16 17 C -0.31 -8.04 9.68 -14.93 -0.14 -8.18 16 18 H 0.11 2.90 7.16 -52.49 -0.38 2.52 16 19 C 0.03 0.73 5.50 -17.47 -0.10 0.63 16 20 N -0.89 -23.05 13.05 55.50 0.72 -22.33 16 21 Si 0.93 20.02 29.55 -169.99 -5.02 15.00 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H 0.07 1.34 6.47 -51.93 -0.34 1.01 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 1.19 6.32 -51.93 -0.33 0.86 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.35 5.55 8.92 -40.82 -0.36 5.19 16 31 H 0.40 9.17 6.77 -40.82 -0.28 8.89 16 32 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 292.70 15.07 4.41 4.41 Total: -1.00 -30.99 292.70 -11.00 -41.99 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -5.77 Total: 14.70 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -3.89 Total: 6.22 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: 1.44 Total: -66.76 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.09 Total: -14.66 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.26 Total: -0.90 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.99 -11.00 -41.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390218967.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.744 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds