Wall clock time and date at job start Mon Mar 30 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 119.99872 * 2 1 4 4 H 1.48501 * 109.47424 * 270.00600 * 3 2 1 5 5 H 1.48503 * 109.47050 * 30.00635 * 3 2 1 6 6 H 1.48504 * 109.47244 * 150.00457 * 3 2 1 7 7 C 1.39928 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00113 * 193.29120 * 7 2 1 9 9 C 1.41411 * 119.99982 * 13.29105 * 7 2 1 10 10 C 1.40774 * 120.21088 * 28.26571 * 9 7 2 11 11 C 1.37635 * 119.87478 * 179.97438 * 10 9 7 12 12 C 1.38550 * 120.31613 * 359.72093 * 11 10 9 13 13 C 1.39198 * 120.43524 * 0.55514 * 12 11 10 14 14 N 1.40207 * 119.94316 * 179.72299 * 13 12 11 15 15 C 1.34234 * 122.92460 * 112.65659 * 14 13 12 16 16 O 1.21228 * 125.80280 * 352.31463 * 15 14 13 17 17 C 1.51528 * 108.39930 * 172.29218 * 15 14 13 18 18 H 1.08991 * 115.33941 * 250.81926 * 17 15 14 19 19 C 1.53393 * 114.18938 * 112.20218 * 17 15 14 20 20 C 1.53590 * 87.79807 * 281.51906 * 19 17 15 21 21 C 1.55287 * 102.04601 * 18.92757 * 17 15 14 22 22 H 1.09001 * 117.77719 * 210.29899 * 21 17 15 23 23 C 1.34207 * 122.92436 * 292.62771 * 14 13 12 24 24 O 1.21229 * 125.84647 * 352.02504 * 23 14 13 25 25 C 1.38238 * 120.10984 * 359.44742 * 13 12 11 26 26 H 0.97006 * 120.00440 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.06048 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.84575 * 180.02562 * 11 10 9 29 29 H 1.07999 * 119.78022 * 180.29412 * 12 11 10 30 30 H 1.09002 * 113.50027 * 36.25023 * 19 17 15 31 31 H 1.09006 * 113.49634 * 166.73202 * 19 17 15 32 32 H 1.09002 * 113.49237 * 90.96320 * 20 19 17 33 33 H 1.08997 * 113.49487 * 221.42203 * 20 19 17 34 34 H 1.08009 * 120.15560 * 180.25704 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4896 2.0466 -1.4001 5 1 1.4397 2.6526 0.7002 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2118 -0.0005 8 1 3.0662 -1.2244 0.2145 9 6 1.3293 -2.4199 -0.2826 10 6 0.1886 -2.4157 -1.1075 11 6 -0.4663 -3.5957 -1.3779 12 6 -0.0048 -4.7893 -0.8468 13 6 1.1185 -4.8078 -0.0250 14 7 1.5731 -6.0207 0.5116 15 6 2.7396 -6.5831 0.1584 16 8 3.4670 -6.2059 -0.7350 17 6 2.9930 -7.7694 1.0665 18 1 3.7976 -7.6394 1.7901 19 6 2.9288 -9.1284 0.3580 20 6 1.3979 -9.0210 0.4186 21 6 1.5741 -8.0561 1.6287 22 1 1.5007 -8.4810 2.6298 23 6 0.8801 -6.7201 1.4236 24 8 -0.1246 -6.3477 1.9905 25 6 1.7899 -3.6331 0.2584 26 1 -0.4851 0.8401 0.0004 27 1 -0.1720 -1.4883 -1.5273 28 1 -1.3412 -3.5920 -2.0112 29 1 -0.5226 -5.7108 -1.0685 30 1 3.3260 -9.1086 -0.6569 31 1 3.3318 -9.9481 0.9529 32 1 0.9607 -8.5433 -0.4583 33 1 0.9064 -9.9590 0.6767 34 1 2.6640 -3.6472 0.8926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397115081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:02 Heat of formation + Delta-G solvation = -11.843341 kcal Electronic energy + Delta-G solvation = -20277.675713 eV Core-core repulsion = 17141.478241 eV Total energy + Delta-G solvation = -3136.197472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.41265 -38.21719 -37.99726 -36.87788 -35.07190 -33.42739 -29.99198 -29.48655 -26.88924 -26.44590 -25.36553 -23.30830 -21.91379 -20.95727 -20.06495 -19.21406 -17.78436 -16.77299 -16.21523 -15.84853 -15.47849 -15.10998 -14.78055 -14.70690 -13.98781 -13.77884 -13.38106 -13.32374 -13.02889 -12.48309 -12.27490 -11.86189 -11.73786 -11.39769 -11.25352 -11.20167 -10.97348 -10.84719 -10.54692 -10.32240 -9.89490 -9.76515 -9.69389 -9.26215 -9.19555 -7.61961 -7.43828 -6.79611 -4.46514 1.75977 2.48371 2.72226 2.88471 2.99205 3.05808 3.09915 3.15309 3.78153 3.90752 4.19204 4.26610 4.37811 4.47366 4.56288 5.06613 5.19312 5.35545 5.49704 5.52559 5.62407 5.64694 5.93244 5.97574 6.17934 6.24833 6.75729 6.88835 6.94678 7.13124 7.23139 7.35914 7.62852 7.63073 7.83429 7.90854 8.03795 8.29545 8.51964 8.79261 8.81754 10.15882 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.031675 B = 0.005013 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.777492 B = 5584.523255 C = 5884.902350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.146 4.146 11 C -0.098 4.098 12 C -0.217 4.217 13 C 0.121 3.879 14 N -0.517 5.517 15 C 0.538 3.462 16 O -0.466 6.466 17 C -0.148 4.148 18 H 0.134 0.866 19 C -0.110 4.110 20 C -0.121 4.121 21 C -0.146 4.146 22 H 0.145 0.855 23 C 0.527 3.473 24 O -0.468 6.468 25 C -0.199 4.199 26 H 0.282 0.718 27 H 0.124 0.876 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.502 -13.638 1.771 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.738 3.262 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.491 4.491 8 H 0.098 0.902 9 C 0.114 3.886 10 C -0.165 4.165 11 C -0.117 4.117 12 C -0.238 4.238 13 C 0.034 3.966 14 N -0.255 5.255 15 C 0.326 3.674 16 O -0.336 6.336 17 C -0.170 4.170 18 H 0.152 0.848 19 C -0.148 4.148 20 C -0.159 4.159 21 C -0.167 4.167 22 H 0.163 0.837 23 C 0.315 3.685 24 O -0.338 6.338 25 C -0.219 4.219 26 H 0.093 0.907 27 H 0.142 0.858 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.136 -13.023 1.598 13.491 hybrid contribution 0.255 0.899 0.197 0.955 sum 3.391 -12.125 1.796 12.717 Atomic orbital electron populations 1.69789 1.07509 1.29362 1.35578 1.25899 0.94831 1.01346 0.92200 0.86224 0.80354 0.80282 0.79351 1.19196 1.20231 1.18607 1.19551 0.96672 0.90461 1.42373 0.90247 1.17450 0.91375 0.91389 0.88377 1.21456 0.98357 0.96792 0.99915 1.20556 0.98770 0.92590 0.99783 1.20214 1.00071 0.97403 1.06074 1.17359 0.97636 0.82384 0.99192 1.44392 1.20961 1.21894 1.38269 1.20423 0.80143 0.83611 0.83228 1.90747 1.48763 1.65081 1.28985 1.23510 0.99049 0.95193 0.99224 0.84788 1.22587 0.95833 0.94378 1.02015 1.23161 0.97327 0.99237 0.96128 1.24341 0.95023 0.94735 1.02613 0.83746 1.20889 0.83603 0.86412 0.77553 1.90743 1.22957 1.73891 1.46201 1.20924 1.03264 0.91742 1.06009 0.90719 0.85834 0.88374 0.89214 0.89795 0.88061 0.89449 0.89141 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.65 10.94 55.55 0.61 -20.05 16 2 C 0.07 1.88 5.21 -17.35 -0.09 1.79 16 3 Si 0.91 18.79 29.58 -169.99 -5.03 13.76 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.38 9.05 -37.74 -0.34 -12.72 16 8 H 0.08 2.06 7.88 -52.49 -0.41 1.65 16 9 C 0.12 3.20 5.54 -106.85 -0.59 2.61 16 10 C -0.15 -3.82 8.66 -38.84 -0.34 -4.16 16 11 C -0.10 -2.34 10.02 -39.69 -0.40 -2.74 16 12 C -0.22 -5.13 9.86 -39.11 -0.39 -5.52 16 13 C 0.12 2.90 5.00 -83.67 -0.42 2.48 16 14 N -0.52 -10.22 2.62 -58.99 -0.15 -10.37 16 15 C 0.54 9.44 6.92 -10.82 -0.07 9.37 16 16 O -0.47 -9.73 17.70 5.60 0.10 -9.63 16 17 C -0.15 -1.69 5.13 -89.95 -0.46 -2.15 16 18 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.11 -0.93 7.69 -26.22 -0.20 -1.13 16 20 C -0.12 -1.14 7.34 -24.94 -0.18 -1.33 16 21 C -0.15 -1.65 5.31 -88.47 -0.47 -2.12 16 22 H 0.14 1.21 8.14 -51.93 -0.42 0.78 16 23 C 0.53 9.35 7.39 -10.63 -0.08 9.27 16 24 O -0.47 -10.01 17.70 5.60 0.10 -9.91 16 25 C -0.20 -5.15 9.59 -38.70 -0.37 -5.52 16 26 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 27 H 0.12 3.28 6.27 -52.49 -0.33 2.95 16 28 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 29 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.00 7.87 -51.93 -0.41 0.59 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.10 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 297.79 15.07 4.49 4.49 Total: -1.00 -31.89 297.79 -7.96 -39.85 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -3.67 Total: 3.74 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -4.40 Total: -11.87 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: 0.45 Total: -30.42 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.20 Total: -19.54 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.89 -7.96 -39.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397115081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.004 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds