Wall clock time and date at job start Mon Mar 30 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 119.99872 * 2 1 4 4 H 1.48501 * 109.47424 * 270.00600 * 3 2 1 5 5 H 1.48503 * 109.47050 * 30.00635 * 3 2 1 6 6 H 1.48504 * 109.47244 * 150.00457 * 3 2 1 7 7 C 1.39928 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00113 * 193.29120 * 7 2 1 9 9 C 1.41411 * 119.99982 * 13.29105 * 7 2 1 10 10 C 1.40774 * 120.21088 * 28.26571 * 9 7 2 11 11 C 1.37635 * 119.87478 * 179.97438 * 10 9 7 12 12 C 1.38550 * 120.31613 * 359.72093 * 11 10 9 13 13 C 1.39198 * 120.43524 * 0.55514 * 12 11 10 14 14 N 1.40207 * 119.94316 * 179.72299 * 13 12 11 15 15 C 1.34234 * 122.92460 * 112.65659 * 14 13 12 16 16 O 1.21228 * 125.80280 * 352.31463 * 15 14 13 17 17 C 1.51528 * 108.39930 * 172.29218 * 15 14 13 18 18 H 1.08991 * 115.33941 * 250.81926 * 17 15 14 19 19 C 1.53393 * 114.18938 * 112.20218 * 17 15 14 20 20 C 1.53590 * 87.79807 * 281.51906 * 19 17 15 21 21 C 1.55287 * 102.04601 * 18.92757 * 17 15 14 22 22 H 1.09001 * 117.77719 * 210.29899 * 21 17 15 23 23 C 1.34207 * 122.92436 * 292.62771 * 14 13 12 24 24 O 1.21229 * 125.84647 * 352.02504 * 23 14 13 25 25 C 1.38238 * 120.10984 * 359.44742 * 13 12 11 26 26 H 0.97006 * 120.00440 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.06048 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.84575 * 180.02562 * 11 10 9 29 29 H 1.07999 * 119.78022 * 180.29412 * 12 11 10 30 30 H 1.09002 * 113.50027 * 36.25023 * 19 17 15 31 31 H 1.09006 * 113.49634 * 166.73202 * 19 17 15 32 32 H 1.09002 * 113.49237 * 90.96320 * 20 19 17 33 33 H 1.08997 * 113.49487 * 221.42203 * 20 19 17 34 34 H 1.08009 * 120.15560 * 180.25704 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4896 2.0466 -1.4001 5 1 1.4397 2.6526 0.7002 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2118 -0.0005 8 1 3.0662 -1.2244 0.2145 9 6 1.3293 -2.4199 -0.2826 10 6 0.1886 -2.4157 -1.1075 11 6 -0.4663 -3.5957 -1.3779 12 6 -0.0048 -4.7893 -0.8468 13 6 1.1185 -4.8078 -0.0250 14 7 1.5731 -6.0207 0.5116 15 6 2.7396 -6.5831 0.1584 16 8 3.4670 -6.2059 -0.7350 17 6 2.9930 -7.7694 1.0665 18 1 3.7976 -7.6394 1.7901 19 6 2.9288 -9.1284 0.3580 20 6 1.3979 -9.0210 0.4186 21 6 1.5741 -8.0561 1.6287 22 1 1.5007 -8.4810 2.6298 23 6 0.8801 -6.7201 1.4236 24 8 -0.1246 -6.3477 1.9905 25 6 1.7899 -3.6331 0.2584 26 1 -0.4851 0.8401 0.0004 27 1 -0.1720 -1.4883 -1.5273 28 1 -1.3412 -3.5920 -2.0112 29 1 -0.5226 -5.7108 -1.0685 30 1 3.3260 -9.1086 -0.6569 31 1 3.3318 -9.9481 0.9529 32 1 0.9607 -8.5433 -0.4583 33 1 0.9064 -9.9590 0.6767 34 1 2.6640 -3.6472 0.8926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397115081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:01 Heat of formation + Delta-G solvation = -31.365781 kcal Electronic energy + Delta-G solvation = -20278.522269 eV Core-core repulsion = 17141.478241 eV Total energy + Delta-G solvation = -3137.044028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.69312 -39.74320 -39.61211 -38.27529 -36.69251 -35.28649 -31.97910 -31.17313 -27.91486 -27.71595 -27.26023 -24.54343 -23.52918 -22.85874 -21.27181 -20.63744 -19.45549 -18.13279 -17.77461 -17.34646 -17.15976 -16.65175 -16.37727 -16.07524 -15.37412 -15.14709 -15.01130 -14.92664 -14.32375 -14.19607 -13.67303 -13.30374 -13.14204 -13.02006 -12.83822 -12.70905 -12.39979 -12.24767 -11.92801 -11.71276 -11.62399 -11.26458 -11.13959 -11.08573 -10.85938 -9.61302 -9.39610 -8.72065 -6.51997 0.39168 0.62960 0.79051 1.35195 1.44381 1.48750 1.51357 1.60300 2.16840 2.57948 2.83179 3.14463 3.28219 3.42713 3.51800 3.69536 4.21483 4.23786 4.29005 4.39163 4.43118 4.68383 4.77175 4.80542 4.89236 4.91846 5.04424 5.06046 5.18868 5.28604 5.43006 5.59150 5.79193 5.88058 5.90995 6.10994 6.27517 6.46983 6.70711 6.79347 6.84998 8.26129 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.031675 B = 0.005013 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.777492 B = 5584.523255 C = 5884.902350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.497 4.497 8 H 0.075 0.925 9 C 0.090 3.910 10 C -0.170 4.170 11 C -0.095 4.095 12 C -0.227 4.227 13 C 0.121 3.879 14 N -0.532 5.532 15 C 0.527 3.473 16 O -0.511 6.511 17 C -0.139 4.139 18 H 0.168 0.832 19 C -0.091 4.091 20 C -0.121 4.121 21 C -0.123 4.123 22 H 0.189 0.811 23 C 0.516 3.484 24 O -0.516 6.516 25 C -0.226 4.226 26 H 0.292 0.708 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.150 0.850 32 H 0.059 0.941 33 H 0.128 0.872 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 -15.892 2.673 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.180 4.180 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.526 4.526 8 H 0.093 0.907 9 C 0.087 3.913 10 C -0.190 4.190 11 C -0.114 4.114 12 C -0.247 4.247 13 C 0.033 3.967 14 N -0.270 5.270 15 C 0.319 3.681 16 O -0.384 6.384 17 C -0.160 4.160 18 H 0.186 0.814 19 C -0.129 4.129 20 C -0.158 4.158 21 C -0.144 4.144 22 H 0.206 0.794 23 C 0.308 3.692 24 O -0.388 6.388 25 C -0.247 4.247 26 H 0.103 0.897 27 H 0.133 0.867 28 H 0.147 0.853 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.168 0.832 32 H 0.077 0.923 33 H 0.146 0.854 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.897 -15.326 2.504 16.011 hybrid contribution -0.036 1.537 -0.102 1.541 sum 3.862 -13.788 2.402 14.519 Atomic orbital electron populations 1.69833 1.08958 1.30968 1.35283 1.26803 0.95659 1.04568 0.90928 0.85083 0.78814 0.75309 0.79766 1.18261 1.18799 1.18418 1.19796 0.96766 0.91706 1.44335 0.90715 1.17836 0.92222 0.92276 0.88976 1.21440 0.99092 0.97329 1.01092 1.20896 0.99173 0.91952 0.99376 1.20530 1.00195 0.98127 1.05891 1.17546 0.96982 0.84003 0.98175 1.44825 1.22427 1.20808 1.38969 1.21663 0.78529 0.84794 0.83139 1.90712 1.49676 1.66812 1.31211 1.23683 1.00148 0.93697 0.98469 0.81449 1.22728 0.94675 0.93310 1.02141 1.23270 0.98731 0.99817 0.93996 1.24657 0.93040 0.91092 1.05585 0.79426 1.22192 0.82886 0.88276 0.75855 1.90710 1.25125 1.75285 1.47726 1.20990 1.03882 0.92657 1.07158 0.89709 0.86746 0.85349 0.87238 0.90597 0.83191 0.92261 0.85418 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.90 10.94 21.82 0.24 -43.66 16 2 C 0.04 1.83 5.21 85.25 0.44 2.28 16 3 Si 0.99 38.96 29.58 68.60 2.03 40.99 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.50 -28.07 9.05 23.46 0.21 -27.85 16 8 H 0.07 4.11 7.88 -2.91 -0.02 4.09 16 9 C 0.09 5.20 5.54 -21.30 -0.12 5.08 16 10 C -0.17 -9.36 8.66 22.75 0.20 -9.16 16 11 C -0.10 -4.68 10.02 22.20 0.22 -4.46 16 12 C -0.23 -11.03 9.86 22.58 0.22 -10.80 16 13 C 0.12 6.05 5.00 38.03 0.19 6.24 16 14 N -0.53 -21.35 2.62 -577.99 -1.52 -22.86 16 15 C 0.53 18.41 6.92 88.01 0.61 19.02 16 16 O -0.51 -21.95 17.70 -2.87 -0.05 -22.00 16 17 C -0.14 -2.68 5.13 -10.36 -0.05 -2.74 16 18 H 0.17 2.22 8.14 -2.39 -0.02 2.20 16 19 C -0.09 -1.07 7.69 30.92 0.24 -0.84 16 20 C -0.12 -1.79 7.34 31.75 0.23 -1.55 16 21 C -0.12 -2.31 5.31 -9.40 -0.05 -2.36 16 22 H 0.19 2.01 8.14 -2.39 -0.02 1.99 16 23 C 0.52 17.99 7.39 88.14 0.65 18.64 16 24 O -0.52 -22.26 17.70 -2.87 -0.05 -22.31 16 25 C -0.23 -12.45 9.59 22.84 0.22 -12.23 16 26 H 0.29 13.91 8.30 -92.70 -0.77 13.14 16 27 H 0.11 6.38 6.27 -2.91 -0.02 6.36 16 28 H 0.13 5.37 8.06 -2.91 -0.02 5.34 16 29 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.15 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.06 1.24 7.87 -2.39 -0.02 1.22 16 33 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -76.63 297.79 4.99 -71.64 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 1.12 Total: 18.95 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 3.22 Total: -20.75 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -1.28 Total: -66.53 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.10 Total: -44.31 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -76.63 4.99 -71.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397115081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.277 kcal (2) G-P(sol) polarization free energy of solvation -76.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds