Wall clock time and date at job start Mon Mar 30 2020 04:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.88680 * 297.57263 * 9 7 2 11 11 C 1.55156 * 111.00296 * 61.45108 * 9 7 2 12 12 C 1.54331 * 102.93936 * 153.57760 * 11 9 7 13 13 N 1.47018 * 107.27103 * 337.80752 * 12 11 9 14 14 S 1.65603 * 125.64869 * 178.89429 * 13 12 11 15 15 O 1.42097 * 106.40143 * 203.56729 * 14 13 12 16 16 O 1.42098 * 106.40249 * 336.48531 * 14 13 12 17 17 C 1.76198 * 107.21823 * 90.02874 * 14 13 12 18 18 C 1.34673 * 126.58612 * 269.68745 * 17 14 13 19 19 N 1.34130 * 108.01555 * 179.87661 * 18 17 14 20 20 C 1.30493 * 109.25938 * 0.39397 * 19 18 17 21 21 N 1.35052 * 108.69979 * 359.75861 * 20 19 18 22 22 H 0.96998 * 126.39740 * 179.97438 * 21 20 19 23 23 C 1.47428 * 108.70593 * 358.94360 * 13 12 11 24 24 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 25 25 H 1.08992 * 110.72379 * 271.93814 * 11 9 7 26 26 H 1.08996 * 110.71651 * 35.22190 * 11 9 7 27 27 H 1.08995 * 109.88292 * 97.22589 * 12 11 9 28 28 H 1.09000 * 109.87959 * 218.23981 * 12 11 9 29 29 H 1.07996 * 125.99288 * 0.02562 * 18 17 14 30 30 H 1.08004 * 125.65688 * 179.77859 * 20 19 18 31 31 H 1.09006 * 110.36332 * 265.28937 * 23 13 12 32 32 H 1.09002 * 110.37011 * 142.96406 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6489 -2.6002 0.9024 11 6 0.3731 -2.6344 -1.2726 12 6 0.2578 -4.1629 -1.4521 13 7 1.3940 -4.7722 -0.7455 14 16 1.6971 -6.3958 -0.6249 15 8 2.4990 -6.5691 0.5354 16 8 0.4508 -7.0518 -0.8133 17 6 2.7067 -6.8413 -1.9985 18 6 2.2805 -7.2587 -3.2059 19 7 3.3590 -7.4929 -3.9683 20 6 4.4372 -7.2446 -3.2765 21 7 4.0748 -6.8354 -2.0416 22 1 4.6723 -6.5846 -1.3199 23 6 2.2182 -3.6986 -0.1611 24 1 -0.4850 -0.8401 0.0004 25 1 -0.6091 -2.1898 -1.1123 26 1 0.8672 -2.1814 -2.1321 27 1 -0.6791 -4.5170 -1.0222 28 1 0.2985 -4.4158 -2.5115 29 1 1.2510 -7.3809 -3.5082 30 1 5.4516 -7.3487 -3.6326 31 1 3.0358 -3.4393 -0.8337 32 1 2.6072 -4.0048 0.8100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397673726.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:56 Heat of formation + Delta-G solvation = -16.933865 kcal Electronic energy + Delta-G solvation = -19026.781912 eV Core-core repulsion = 15922.267306 eV Total energy + Delta-G solvation = -3104.514606 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.25458 -37.89899 -37.21854 -35.84337 -33.30526 -32.84348 -30.04178 -29.60966 -28.60784 -24.38222 -22.77989 -21.92002 -21.67013 -20.11312 -19.96043 -18.41440 -17.57822 -16.72495 -16.10064 -15.70629 -15.28843 -14.97816 -14.49934 -13.86631 -13.84149 -13.32388 -13.03264 -12.66359 -12.46230 -12.13470 -12.04159 -11.86169 -11.71061 -11.22360 -10.88403 -10.71828 -10.44307 -10.41280 -10.19815 -9.97859 -9.75438 -9.30247 -8.68488 -8.63855 -8.45475 -6.44572 -4.19753 0.33902 1.27923 2.70410 2.79241 3.16833 3.38321 3.40939 3.53964 3.78203 4.31213 4.33288 4.45111 4.88990 5.12521 5.22686 5.27617 5.47277 5.69297 5.76284 5.96985 6.10174 6.23632 6.31793 6.52660 6.60631 6.76446 6.88615 6.93490 7.04195 7.44818 7.53269 8.04837 8.30715 8.75333 9.52475 10.93080 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027869 B = 0.005393 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.467916 B = 5190.849993 C = 5528.134314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 1.073 2.927 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.597 4.597 8 H 0.053 0.947 9 C 0.033 3.967 10 H 0.034 0.966 11 C -0.122 4.122 12 C 0.118 3.882 13 N -1.004 6.004 14 S 2.731 3.269 15 O -0.959 6.959 16 O -0.946 6.946 17 C -0.596 4.596 18 C 0.100 3.900 19 N -0.503 5.503 20 C 0.230 3.770 21 N -0.516 5.516 22 H 0.430 0.570 23 C 0.125 3.875 24 H 0.274 0.726 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.186 0.814 30 H 0.219 0.781 31 H 0.058 0.942 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.667 -11.348 -4.662 13.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.181 4.181 3 Si 0.902 3.098 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.636 4.636 8 H 0.072 0.928 9 C 0.013 3.987 10 H 0.052 0.948 11 C -0.162 4.162 12 C -0.006 4.006 13 N -0.845 5.845 14 S 2.817 3.183 15 O -0.949 6.949 16 O -0.936 6.936 17 C -0.792 4.792 18 C -0.055 4.055 19 N -0.223 5.223 20 C -0.057 4.057 21 N -0.118 5.118 22 H 0.270 0.730 23 C 0.001 3.999 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.203 0.797 30 H 0.235 0.765 31 H 0.076 0.924 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.198 -10.662 -4.850 13.251 hybrid contribution 1.006 -1.222 0.293 1.609 sum 7.203 -11.883 -4.557 14.624 Atomic orbital electron populations 1.70763 1.06874 1.31237 1.45746 1.25780 0.96503 1.02520 0.93338 0.83474 0.74423 0.74862 0.77046 1.21570 1.21288 1.21346 1.21849 0.94197 0.90796 1.56722 0.92830 1.19999 0.92792 0.92482 0.93423 0.94838 1.22881 1.01733 0.90320 1.01286 1.21892 0.87351 0.96589 0.94810 1.58541 1.36366 1.22281 1.67268 1.00953 0.73228 0.71582 0.72569 1.93556 1.71195 1.85219 1.44915 1.93589 1.40197 1.73409 1.86367 1.34262 0.95091 1.26656 1.23232 1.22458 0.99334 0.95696 0.88038 1.70396 0.97726 1.22034 1.32115 1.25617 1.00640 0.97826 0.81586 1.43038 1.05335 1.48958 1.14431 0.73012 1.22314 0.94304 0.86821 0.96464 0.91363 0.90783 0.91414 0.91704 0.92726 0.79692 0.76457 0.92358 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.54 13.43 55.43 0.74 -24.80 16 2 C 0.02 0.63 5.34 -17.82 -0.10 0.54 16 3 Si 1.07 23.80 29.90 -169.99 -5.08 18.71 16 4 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.60 -15.39 8.55 -34.44 -0.29 -15.68 16 8 H 0.05 1.37 7.79 -52.49 -0.41 0.96 16 9 C 0.03 0.77 2.58 -89.62 -0.23 0.53 16 10 H 0.03 0.83 8.10 -51.93 -0.42 0.40 16 11 C -0.12 -2.53 5.58 -24.89 -0.14 -2.67 16 12 C 0.12 2.04 6.99 -3.06 -0.02 2.02 16 13 N -1.00 -17.26 3.70 -111.42 -0.41 -17.67 16 14 S 2.73 43.01 6.10 -107.50 -0.66 42.35 16 15 O -0.96 -16.76 17.34 -57.17 -0.99 -17.76 16 16 O -0.95 -16.48 17.44 -57.17 -1.00 -17.47 16 17 C -0.60 -8.20 7.27 -16.56 -0.12 -8.32 16 18 C 0.10 1.38 11.64 -17.81 -0.21 1.17 16 19 N -0.50 -6.79 11.25 -14.66 -0.16 -6.95 16 20 C 0.23 2.35 13.04 -90.37 -1.18 1.18 16 21 N -0.52 -5.72 6.15 -13.24 -0.08 -5.80 16 22 H 0.43 3.68 8.96 -40.82 -0.37 3.31 16 23 C 0.12 2.40 6.55 -2.53 -0.02 2.39 16 24 H 0.27 7.51 5.32 -40.82 -0.22 7.29 16 25 H 0.07 1.59 6.45 -51.93 -0.34 1.25 16 26 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.19 2.20 8.06 -52.49 -0.42 1.78 16 30 H 0.22 1.12 8.06 -52.48 -0.42 0.69 16 31 H 0.06 1.08 8.03 -51.93 -0.42 0.67 16 32 H 0.07 1.29 7.78 -51.93 -0.40 0.88 16 LS Contribution 287.04 15.07 4.33 4.33 Total: -1.00 -33.00 287.04 -9.09 -42.09 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -3.47 Total: 1.82 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -2.30 Total: -18.85 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.09 Total: -55.23 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.99 Total: -35.23 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -5.08 Total: 18.71 kcal Atomic # 16 Polarization: 43.01 SS G_CDS: -0.66 Total: 42.35 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.00 -9.09 -42.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397673726.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.161 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds