Wall clock time and date at job start Mon Mar 30 2020 04:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.88680 * 297.57263 * 9 7 2 11 11 C 1.55156 * 111.00296 * 61.45108 * 9 7 2 12 12 C 1.54331 * 102.93936 * 153.57760 * 11 9 7 13 13 N 1.47018 * 107.27103 * 337.80752 * 12 11 9 14 14 S 1.65603 * 125.64869 * 178.89429 * 13 12 11 15 15 O 1.42097 * 106.40143 * 203.56729 * 14 13 12 16 16 O 1.42098 * 106.40249 * 336.48531 * 14 13 12 17 17 C 1.76198 * 107.21823 * 90.02874 * 14 13 12 18 18 C 1.34673 * 126.58612 * 269.68745 * 17 14 13 19 19 N 1.34130 * 108.01555 * 179.87661 * 18 17 14 20 20 C 1.30493 * 109.25938 * 0.39397 * 19 18 17 21 21 N 1.35052 * 108.69979 * 359.75861 * 20 19 18 22 22 H 0.96998 * 126.39740 * 179.97438 * 21 20 19 23 23 C 1.47428 * 108.70593 * 358.94360 * 13 12 11 24 24 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 25 25 H 1.08992 * 110.72379 * 271.93814 * 11 9 7 26 26 H 1.08996 * 110.71651 * 35.22190 * 11 9 7 27 27 H 1.08995 * 109.88292 * 97.22589 * 12 11 9 28 28 H 1.09000 * 109.87959 * 218.23981 * 12 11 9 29 29 H 1.07996 * 125.99288 * 0.02562 * 18 17 14 30 30 H 1.08004 * 125.65688 * 179.77859 * 20 19 18 31 31 H 1.09006 * 110.36332 * 265.28937 * 23 13 12 32 32 H 1.09002 * 110.37011 * 142.96406 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6489 -2.6002 0.9024 11 6 0.3731 -2.6344 -1.2726 12 6 0.2578 -4.1629 -1.4521 13 7 1.3940 -4.7722 -0.7455 14 16 1.6971 -6.3958 -0.6249 15 8 2.4990 -6.5691 0.5354 16 8 0.4508 -7.0518 -0.8133 17 6 2.7067 -6.8413 -1.9985 18 6 2.2805 -7.2587 -3.2059 19 7 3.3590 -7.4929 -3.9683 20 6 4.4372 -7.2446 -3.2765 21 7 4.0748 -6.8354 -2.0416 22 1 4.6723 -6.5846 -1.3199 23 6 2.2182 -3.6986 -0.1611 24 1 -0.4850 -0.8401 0.0004 25 1 -0.6091 -2.1898 -1.1123 26 1 0.8672 -2.1814 -2.1321 27 1 -0.6791 -4.5170 -1.0222 28 1 0.2985 -4.4158 -2.5115 29 1 1.2510 -7.3809 -3.5082 30 1 5.4516 -7.3487 -3.6326 31 1 3.0358 -3.4393 -0.8337 32 1 2.6072 -4.0048 0.8100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397673726.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:56 Heat of formation + Delta-G solvation = -41.058539 kcal Electronic energy + Delta-G solvation = -19027.828036 eV Core-core repulsion = 15922.267306 eV Total energy + Delta-G solvation = -3105.560730 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.17283 -39.47986 -38.54951 -37.17991 -35.18480 -33.76765 -31.33151 -30.97990 -30.20354 -26.30455 -23.83379 -23.29395 -22.67123 -21.84522 -20.96681 -19.72137 -19.17149 -18.33494 -17.33982 -17.01110 -16.47487 -16.19385 -15.65623 -15.44232 -14.87868 -14.71683 -14.53507 -14.35477 -14.07769 -13.50294 -13.47728 -13.40297 -13.03297 -12.92274 -12.60156 -12.33470 -11.89219 -11.69640 -11.50673 -11.40854 -11.36157 -10.59464 -10.46631 -10.29912 -10.02973 -8.53756 -6.29179 -0.92155 0.30302 1.58648 1.65947 1.73579 1.81546 1.88129 2.03626 2.56037 2.60825 3.10607 3.24485 3.57158 3.72707 3.97936 4.16985 4.23923 4.24744 4.41872 4.57478 4.61282 4.73608 4.89911 5.09714 5.12350 5.28454 5.31799 5.34339 5.61281 6.09228 6.16909 6.26168 6.63635 6.68237 7.50557 8.85111 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027869 B = 0.005393 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.467916 B = 5190.849993 C = 5528.134314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.025 4.025 3 Si 1.116 2.884 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.605 4.605 8 H 0.053 0.947 9 C 0.017 3.983 10 H 0.007 0.993 11 C -0.114 4.114 12 C 0.122 3.878 13 N -1.008 6.008 14 S 2.754 3.246 15 O -0.978 6.978 16 O -0.964 6.964 17 C -0.612 4.612 18 C 0.096 3.904 19 N -0.536 5.536 20 C 0.253 3.747 21 N -0.515 5.515 22 H 0.441 0.559 23 C 0.136 3.864 24 H 0.266 0.734 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.195 0.805 30 H 0.269 0.731 31 H 0.068 0.932 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.520 -12.135 -5.773 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.224 4.224 3 Si 0.939 3.061 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.643 4.643 8 H 0.071 0.929 9 C -0.003 4.003 10 H 0.025 0.975 11 C -0.154 4.154 12 C -0.003 4.003 13 N -0.847 5.847 14 S 2.844 3.156 15 O -0.969 6.969 16 O -0.954 6.954 17 C -0.811 4.811 18 C -0.060 4.060 19 N -0.256 5.256 20 C -0.034 4.034 21 N -0.118 5.118 22 H 0.283 0.717 23 C 0.012 3.988 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.212 0.788 30 H 0.285 0.715 31 H 0.086 0.914 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.038 -11.447 -5.915 15.187 hybrid contribution 0.499 -1.075 0.600 1.329 sum 8.537 -12.522 -5.315 16.061 Atomic orbital electron populations 1.70856 1.07824 1.30950 1.48002 1.27054 0.96609 1.05957 0.92792 0.82921 0.74362 0.71663 0.77126 1.19638 1.21102 1.20853 1.22197 0.94409 0.92131 1.55597 0.92880 1.19992 0.93742 0.93252 0.93345 0.97501 1.22657 1.00215 0.92951 0.99586 1.21857 0.87827 0.93920 0.96696 1.58475 1.36252 1.22460 1.67554 0.99961 0.72761 0.70535 0.72384 1.93527 1.71499 1.85220 1.46612 1.93564 1.41603 1.73374 1.86822 1.33603 0.96341 1.28771 1.22386 1.22774 1.00261 0.95000 0.88005 1.70435 0.98474 1.23630 1.33013 1.26623 1.01907 0.94435 0.80439 1.43113 1.04439 1.48894 1.15327 0.71656 1.22028 0.93688 0.86003 0.97087 0.92204 0.92308 0.92391 0.90996 0.89833 0.78800 0.71544 0.91396 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.78 13.43 21.45 0.29 -53.49 16 2 C -0.02 -1.33 5.34 84.65 0.45 -0.87 16 3 Si 1.12 47.64 29.90 68.60 2.05 49.69 16 4 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.60 -31.40 8.55 25.60 0.22 -31.18 16 8 H 0.05 2.69 7.79 -2.91 -0.02 2.67 16 9 C 0.02 0.79 2.58 -10.15 -0.03 0.76 16 10 H 0.01 0.35 8.10 -2.39 -0.02 0.33 16 11 C -0.11 -4.79 5.58 31.79 0.18 -4.61 16 12 C 0.12 4.09 6.99 86.73 0.61 4.70 16 13 N -1.01 -33.66 3.70 -506.41 -1.87 -35.54 16 14 S 2.75 83.31 6.10 -56.49 -0.34 82.96 16 15 O -0.98 -33.15 17.34 -128.00 -2.22 -35.37 16 16 O -0.96 -32.54 17.44 -128.00 -2.23 -34.77 16 17 C -0.61 -15.51 7.27 83.09 0.60 -14.90 16 18 C 0.10 2.43 11.64 83.52 0.97 3.41 16 19 N -0.54 -12.92 11.25 -200.30 -2.25 -15.17 16 20 C 0.25 4.20 13.04 180.26 2.35 6.55 16 21 N -0.51 -9.88 6.15 -195.80 -1.20 -11.08 16 22 H 0.44 6.26 8.96 -92.71 -0.83 5.43 16 23 C 0.14 5.18 6.55 86.85 0.57 5.75 16 24 H 0.27 15.13 5.32 -92.71 -0.49 14.63 16 25 H 0.06 2.60 6.45 -2.39 -0.02 2.59 16 26 H 0.06 2.50 8.03 -2.39 -0.02 2.48 16 27 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.20 4.29 8.06 -2.91 -0.02 4.27 16 30 H 0.27 1.31 8.06 -2.91 -0.02 1.28 16 31 H 0.07 2.44 8.03 -2.38 -0.02 2.42 16 32 H 0.07 2.62 7.78 -2.39 -0.02 2.60 16 Total: -1.00 -70.90 287.04 -1.27 -72.17 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.60 Total: 10.99 kcal Atomic # 6 Polarization: -36.32 SS G_CDS: 5.92 Total: -30.40 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -5.04 Total: -115.28 kcal Atomic # 8 Polarization: -65.69 SS G_CDS: -4.45 Total: -70.14 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.05 Total: 49.69 kcal Atomic # 16 Polarization: 83.31 SS G_CDS: -0.34 Total: 82.96 kcal Total: -70.90 -1.27 -72.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397673726.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.108 kcal (2) G-P(sol) polarization free energy of solvation -70.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds