Wall clock time and date at job start Mon Mar 30 2020 04:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99719 * 359.71484 * 7 2 1 10 10 O 1.42094 * 106.40490 * 293.82249 * 9 7 2 11 11 O 1.42107 * 106.39987 * 66.74063 * 9 7 2 12 12 N 1.65600 * 107.21803 * 180.27922 * 9 7 2 13 13 C 1.47026 * 125.64722 * 269.69482 * 12 9 7 14 14 C 1.54335 * 107.26535 * 178.84905 * 13 12 9 15 15 C 1.55159 * 103.02177 * 338.14228 * 14 13 12 16 16 H 1.08998 * 111.00240 * 277.23628 * 15 14 13 17 17 C 1.50693 * 111.00588 * 153.37999 * 15 14 13 18 18 N 1.30504 * 125.64855 * 152.82843 * 17 15 14 19 19 C 1.34127 * 109.25377 * 180.02562 * 18 17 15 20 20 C 1.34667 * 108.02219 * 359.97438 * 19 18 17 21 21 N 1.35037 * 125.65283 * 332.52223 * 17 15 14 22 22 H 0.97007 * 126.39390 * 0.02562 * 21 17 15 23 23 C 1.47425 * 125.64838 * 90.00294 * 12 9 7 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.88186 * 298.39686 * 13 12 9 26 26 H 1.09001 * 109.88323 * 59.56321 * 13 12 9 27 27 H 1.09000 * 110.85415 * 219.67566 * 14 13 12 28 28 H 1.08997 * 110.66819 * 96.52245 * 14 13 12 29 29 H 1.07998 * 125.98960 * 180.02562 * 19 18 17 30 30 H 1.08004 * 126.59320 * 180.02562 * 20 19 18 31 31 H 1.09000 * 110.36579 * 322.93103 * 23 12 9 32 32 H 1.09000 * 110.36845 * 85.14733 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7199 0.0064 10 8 0.4516 -2.7897 1.2564 11 8 0.4514 -2.8008 -1.2430 12 7 2.2485 -3.9353 0.0117 13 6 2.8257 -4.5738 -1.1802 14 6 3.8440 -5.6245 -0.6893 15 6 4.1923 -5.1324 0.7404 16 1 4.9543 -4.3536 0.7107 17 6 4.6289 -6.2792 1.6151 18 7 5.4304 -6.1909 2.6412 19 6 5.5962 -7.4084 3.1790 20 6 4.8694 -8.2843 2.4591 21 7 4.2510 -7.5675 1.4705 22 1 3.6551 -7.9198 0.7909 23 6 2.8322 -4.5605 1.2125 24 1 -0.4850 0.8400 0.0004 25 1 2.0393 -5.0588 -1.7585 26 1 3.3320 -3.8273 -1.7922 27 1 4.7315 -5.6299 -1.3220 28 1 3.3896 -6.6146 -0.6562 29 1 6.2051 -7.6448 4.0390 30 1 4.7866 -9.3473 2.6316 31 1 2.9844 -3.8147 1.9926 32 1 2.1874 -5.3612 1.5747 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404263754.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:49 Heat of formation + Delta-G solvation = -29.799907 kcal Electronic energy + Delta-G solvation = -18865.049323 eV Core-core repulsion = 15759.976804 eV Total energy + Delta-G solvation = -3105.072519 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.12425 -38.04989 -35.26335 -33.98780 -33.09490 -32.56268 -31.60931 -29.30570 -27.74714 -26.11876 -22.74661 -22.05872 -20.99870 -20.23169 -18.74715 -18.18855 -17.23161 -16.36960 -15.75028 -14.99382 -14.92071 -14.30466 -14.10928 -13.91244 -13.79642 -13.25850 -13.11414 -12.84922 -12.51369 -11.97343 -11.38251 -11.25540 -11.21968 -11.18397 -10.74615 -10.61096 -10.43459 -10.31802 -10.22749 -10.06811 -10.05129 -9.23100 -8.96932 -8.45129 -8.21782 -6.69286 -5.31884 1.96226 2.19647 3.04340 3.09991 3.10666 3.14550 3.20539 4.05277 4.22650 4.54653 4.60753 4.67590 5.00260 5.02273 5.05510 5.33130 5.43383 5.50922 5.66149 5.70455 5.82127 6.00143 6.01019 6.07182 6.23040 6.25501 6.30728 6.68615 6.79978 7.27234 7.33585 7.40901 7.98247 8.06945 8.89379 10.24423 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030317 B = 0.005281 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.365588 B = 5301.055209 C = 5635.942371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.133 3.867 3 Si 0.922 3.078 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.263 1.263 7 C -1.020 5.020 8 H 0.103 0.897 9 S 2.727 3.273 10 O -0.999 6.999 11 O -1.000 7.000 12 N -1.021 6.021 13 C 0.125 3.875 14 C -0.124 4.124 15 C -0.020 4.020 16 H 0.118 0.882 17 C 0.230 3.770 18 N -0.487 5.487 19 C -0.028 4.028 20 C -0.062 4.062 21 N -0.565 5.565 22 H 0.418 0.582 23 C 0.139 3.861 24 H 0.292 0.708 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.169 0.831 30 H 0.175 0.825 31 H 0.085 0.915 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.599 -13.729 0.382 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -1.153 5.153 8 H 0.121 0.879 9 S 2.828 3.172 10 O -0.990 6.990 11 O -0.991 6.991 12 N -0.856 5.856 13 C -0.001 4.001 14 C -0.164 4.164 15 C -0.042 4.042 16 H 0.136 0.864 17 C -0.034 4.034 18 N -0.206 5.206 19 C -0.176 4.176 20 C -0.196 4.196 21 N -0.168 5.168 22 H 0.257 0.743 23 C 0.012 3.988 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.186 0.814 30 H 0.192 0.808 31 H 0.103 0.897 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.793 -13.015 0.711 15.723 hybrid contribution 0.358 0.109 -0.479 0.608 sum 9.151 -12.906 0.232 15.823 Atomic orbital electron populations 1.69883 1.06803 1.30898 1.40098 1.24758 0.94478 1.00836 0.88446 0.86183 0.79868 0.79559 0.79849 1.18834 1.20123 1.18766 1.30571 1.06211 1.11659 1.66869 0.87853 1.00214 0.71601 0.72565 0.72777 1.93367 1.72412 1.87464 1.45753 1.93359 1.72423 1.87478 1.45807 1.59272 1.61942 1.54066 1.10361 1.21507 0.95419 0.94857 0.88353 1.22730 0.99658 0.98586 0.95393 1.20895 0.98880 0.92806 0.91604 0.86389 1.22942 0.98117 0.84827 0.97544 1.70279 1.17218 1.24886 1.08244 1.22360 1.04073 0.88682 1.02532 1.22726 1.03253 0.99021 0.94612 1.43318 1.38351 1.08634 1.26544 0.74317 1.21725 0.90874 0.97618 0.88607 0.89796 0.91487 0.91233 0.89600 0.91744 0.81413 0.80765 0.89686 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.00 13.19 55.43 0.73 -24.26 16 2 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 3 Si 0.92 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 7 C -1.02 -28.13 9.75 30.60 0.30 -27.83 16 8 H 0.10 2.60 7.81 -52.49 -0.41 2.19 16 9 S 2.73 72.62 5.22 -107.50 -0.56 72.06 16 10 O -1.00 -29.44 17.60 -57.17 -1.01 -30.44 16 11 O -1.00 -29.04 17.60 -57.17 -1.01 -30.05 16 12 N -1.02 -20.37 3.70 -111.41 -0.41 -20.78 16 13 C 0.12 1.95 6.99 -3.06 -0.02 1.93 16 14 C -0.12 -1.41 6.37 -24.89 -0.16 -1.57 16 15 C -0.02 -0.27 3.58 -89.62 -0.32 -0.60 16 16 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 17 C 0.23 3.07 7.04 -155.42 -1.09 1.97 16 18 N -0.49 -7.29 11.25 -10.82 -0.12 -7.42 16 19 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 20 C -0.06 -0.59 12.04 -16.56 -0.20 -0.79 16 21 N -0.56 -5.77 5.91 -10.23 -0.06 -5.83 16 22 H 0.42 3.13 7.59 -40.82 -0.31 2.82 16 23 C 0.14 2.39 6.44 -2.53 -0.02 2.38 16 24 H 0.29 7.74 8.31 -40.82 -0.34 7.40 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 29 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.06 0.93 8.03 -51.93 -0.42 0.52 16 LS Contribution 289.97 15.07 4.37 4.37 Total: -1.00 -37.00 289.97 -8.48 -45.48 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -3.57 Total: 2.66 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -1.82 Total: -21.44 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.14 Total: -58.29 kcal Atomic # 8 Polarization: -58.48 SS G_CDS: -2.01 Total: -60.49 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 72.62 SS G_CDS: -0.56 Total: 72.06 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -37.00 -8.48 -45.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404263754.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.684 kcal (2) G-P(sol) polarization free energy of solvation -37.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds