Wall clock time and date at job start Mon Mar 30 2020 04:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99719 * 359.71484 * 7 2 1 10 10 O 1.42094 * 106.40490 * 293.82249 * 9 7 2 11 11 O 1.42107 * 106.39987 * 66.74063 * 9 7 2 12 12 N 1.65600 * 107.21803 * 180.27922 * 9 7 2 13 13 C 1.47026 * 125.64722 * 269.69482 * 12 9 7 14 14 C 1.54335 * 107.26535 * 178.84905 * 13 12 9 15 15 C 1.55159 * 103.02177 * 338.14228 * 14 13 12 16 16 H 1.08998 * 111.00240 * 277.23628 * 15 14 13 17 17 C 1.50693 * 111.00588 * 153.37999 * 15 14 13 18 18 N 1.30504 * 125.64855 * 152.82843 * 17 15 14 19 19 C 1.34127 * 109.25377 * 180.02562 * 18 17 15 20 20 C 1.34667 * 108.02219 * 359.97438 * 19 18 17 21 21 N 1.35037 * 125.65283 * 332.52223 * 17 15 14 22 22 H 0.97007 * 126.39390 * 0.02562 * 21 17 15 23 23 C 1.47425 * 125.64838 * 90.00294 * 12 9 7 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.88186 * 298.39686 * 13 12 9 26 26 H 1.09001 * 109.88323 * 59.56321 * 13 12 9 27 27 H 1.09000 * 110.85415 * 219.67566 * 14 13 12 28 28 H 1.08997 * 110.66819 * 96.52245 * 14 13 12 29 29 H 1.07998 * 125.98960 * 180.02562 * 19 18 17 30 30 H 1.08004 * 126.59320 * 180.02562 * 20 19 18 31 31 H 1.09000 * 110.36579 * 322.93103 * 23 12 9 32 32 H 1.09000 * 110.36845 * 85.14733 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7199 0.0064 10 8 0.4516 -2.7897 1.2564 11 8 0.4514 -2.8008 -1.2430 12 7 2.2485 -3.9353 0.0117 13 6 2.8257 -4.5738 -1.1802 14 6 3.8440 -5.6245 -0.6893 15 6 4.1923 -5.1324 0.7404 16 1 4.9543 -4.3536 0.7107 17 6 4.6289 -6.2792 1.6151 18 7 5.4304 -6.1909 2.6412 19 6 5.5962 -7.4084 3.1790 20 6 4.8694 -8.2843 2.4591 21 7 4.2510 -7.5675 1.4705 22 1 3.6551 -7.9198 0.7909 23 6 2.8322 -4.5605 1.2125 24 1 -0.4850 0.8400 0.0004 25 1 2.0393 -5.0588 -1.7585 26 1 3.3320 -3.8273 -1.7922 27 1 4.7315 -5.6299 -1.3220 28 1 3.3896 -6.6146 -0.6562 29 1 6.2051 -7.6448 4.0390 30 1 4.7866 -9.3473 2.6316 31 1 2.9844 -3.8147 1.9926 32 1 2.1874 -5.3612 1.5747 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404263754.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:48 Heat of formation + Delta-G solvation = -59.732513 kcal Electronic energy + Delta-G solvation = -18866.347298 eV Core-core repulsion = 15759.976804 eV Total energy + Delta-G solvation = -3106.370494 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.99916 -39.31928 -37.47084 -36.19884 -35.20749 -33.48293 -32.80513 -30.47312 -28.80670 -28.27156 -23.97462 -23.17578 -21.92804 -21.20006 -20.75437 -19.47674 -18.70488 -18.27052 -17.26742 -16.79698 -16.11860 -15.91916 -15.71263 -15.06447 -14.77213 -14.50155 -14.39160 -14.24946 -14.00313 -13.69910 -13.33352 -13.00892 -12.64074 -12.55341 -12.44319 -12.33699 -12.32597 -12.23797 -11.77731 -11.24913 -11.04225 -10.98042 -10.96976 -9.85398 -9.28648 -8.76278 -7.51016 0.20234 1.14055 1.33432 1.35991 1.49034 2.17375 2.20162 2.26214 2.55981 2.81463 3.36972 3.49396 3.69553 3.75213 4.13243 4.25972 4.32585 4.34201 4.47706 4.58010 4.60682 4.73716 4.83750 4.86401 5.03209 5.11875 5.17326 5.24115 5.34758 5.74046 5.86593 5.89118 6.53215 6.76082 7.19701 8.18987 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030317 B = 0.005281 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.365588 B = 5301.055209 C = 5635.942371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.991 3.009 4 H -0.248 1.248 5 H -0.262 1.262 6 H -0.252 1.252 7 C -1.042 5.042 8 H 0.119 0.881 9 S 2.733 3.267 10 O -1.041 7.041 11 O -1.035 7.035 12 N -1.022 6.022 13 C 0.109 3.891 14 C -0.105 4.105 15 C -0.007 4.007 16 H 0.113 0.887 17 C 0.209 3.791 18 N -0.527 5.527 19 C -0.062 4.062 20 C -0.035 4.035 21 N -0.554 5.554 22 H 0.433 0.567 23 C 0.131 3.869 24 H 0.300 0.700 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.185 0.815 30 H 0.218 0.782 31 H 0.063 0.937 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.614 -15.122 -0.068 19.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.809 3.191 4 H -0.171 1.171 5 H -0.186 1.186 6 H -0.176 1.176 7 C -1.176 5.176 8 H 0.137 0.863 9 S 2.837 3.163 10 O -1.031 7.031 11 O -1.025 7.025 12 N -0.861 5.861 13 C -0.016 4.016 14 C -0.144 4.144 15 C -0.029 4.029 16 H 0.131 0.869 17 C -0.056 4.056 18 N -0.248 5.248 19 C -0.209 4.209 20 C -0.169 4.169 21 N -0.159 5.159 22 H 0.274 0.726 23 C 0.005 3.995 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.135 0.865 28 H 0.111 0.889 29 H 0.202 0.798 30 H 0.235 0.765 31 H 0.081 0.919 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.788 -14.431 0.240 18.019 hybrid contribution -0.243 0.389 -0.288 0.542 sum 10.545 -14.042 -0.048 17.561 Atomic orbital electron populations 1.69976 1.08772 1.32494 1.41370 1.26040 0.95406 1.05400 0.87455 0.85155 0.78795 0.74410 0.80778 1.17126 1.18617 1.17627 1.30959 1.07225 1.12601 1.66793 0.86257 0.99538 0.72144 0.73268 0.71394 1.93301 1.74373 1.88309 1.47148 1.93299 1.74164 1.88252 1.46808 1.58641 1.61289 1.53034 1.13127 1.21909 0.96614 0.96041 0.86999 1.22727 0.99599 0.98216 0.93907 1.20663 0.96207 0.93159 0.92904 0.86895 1.22626 0.99322 0.85732 0.97917 1.70186 1.18336 1.27032 1.09225 1.22820 1.05800 0.88316 1.03975 1.23378 1.00551 1.00437 0.92558 1.43303 1.38023 1.07669 1.26858 0.72615 1.21914 0.93301 0.97130 0.87205 0.89007 0.91134 0.91022 0.86451 0.88897 0.79832 0.76527 0.91871 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.10 13.19 21.45 0.28 -53.82 16 2 C 0.07 3.95 5.46 84.65 0.46 4.41 16 3 Si 0.99 41.85 29.54 68.60 2.03 43.87 16 4 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 7 C -1.04 -58.51 9.75 67.73 0.66 -57.85 16 8 H 0.12 6.05 7.81 -2.91 -0.02 6.03 16 9 S 2.73 150.36 5.22 -56.49 -0.29 150.07 16 10 O -1.04 -64.01 17.60 -128.00 -2.25 -66.26 16 11 O -1.03 -62.12 17.60 -128.00 -2.25 -64.38 16 12 N -1.02 -41.20 3.70 -506.38 -1.87 -43.08 16 13 C 0.11 3.29 6.99 86.73 0.61 3.89 16 14 C -0.11 -2.08 6.37 31.79 0.20 -1.88 16 15 C -0.01 -0.19 3.58 -10.15 -0.04 -0.23 16 16 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 17 C 0.21 5.16 7.04 138.13 0.97 6.14 16 18 N -0.53 -15.22 11.25 -188.14 -2.12 -17.33 16 19 C -0.06 -1.34 11.87 83.52 0.99 -0.34 16 20 C -0.03 -0.53 12.04 83.09 1.00 0.47 16 21 N -0.55 -9.46 5.91 -186.28 -1.10 -10.56 16 22 H 0.43 4.71 7.59 -92.70 -0.70 4.01 16 23 C 0.13 4.54 6.44 86.86 0.56 5.10 16 24 H 0.30 16.26 8.31 -92.71 -0.77 15.49 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 27 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.09 1.32 6.56 -2.39 -0.02 1.30 16 29 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.22 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.06 2.08 8.03 -2.39 -0.02 2.06 16 Total: -1.00 -83.79 289.97 -1.72 -85.50 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.45 Total: 16.28 kcal Atomic # 6 Polarization: -45.71 SS G_CDS: 5.42 Total: -40.29 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -4.81 Total: -124.79 kcal Atomic # 8 Polarization: -126.13 SS G_CDS: -4.51 Total: -130.64 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 150.36 SS G_CDS: -0.29 Total: 150.07 kcal Total: -83.79 -1.72 -85.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404263754.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.772 kcal (2) G-P(sol) polarization free energy of solvation -83.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds