Wall clock time and date at job start Mon Mar 30 2020 05:42:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31630 * 1
3 3 Si 1.86800 * 120.00086 * 2 1
4 4 H 1.48501 * 109.46755 * 269.99737 * 3 2 1
5 5 H 1.48495 * 109.46931 * 29.99751 * 3 2 1
6 6 H 1.48500 * 109.46738 * 149.99993 * 3 2 1
7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1
9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1
10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2
11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7
12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9
13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9
14 14 C 1.46504 * 119.99561 * 179.97438 * 13 11 10
15 15 H 1.08998 * 113.18147 * 28.11373 * 14 13 11
16 16 C 1.55637 * 114.06491 * 255.49252 * 14 13 11
17 17 C 1.50050 * 84.27692 * 282.36248 * 16 14 13
18 18 H 1.09003 * 112.10705 * 75.25820 * 17 16 14
19 19 O 1.41071 * 127.17111 * 219.01482 * 17 16 14
20 20 C 1.44350 * 109.41200 * 163.37989 * 19 17 16
21 21 C 1.52390 * 112.70002 * 302.27534 * 20 19 17
22 22 C 1.54208 * 112.28777 * 50.07521 * 21 20 19
23 23 C 1.50510 * 114.06517 * 160.96482 * 14 13 11
24 24 H 1.09002 * 113.06527 * 191.70847 * 23 14 13
25 25 H 0.97005 * 119.99878 * 0.02562 * 1 2 3
26 26 H 1.09005 * 109.46889 * 299.99975 * 10 9 7
27 27 H 1.09000 * 109.47231 * 59.99947 * 10 9 7
28 28 H 0.96993 * 120.00373 * 359.97438 * 13 11 10
29 29 H 1.08999 * 114.06248 * 36.19295 * 16 14 13
30 30 H 1.09001 * 114.06088 * 168.53488 * 16 14 13
31 31 H 1.09002 * 108.83357 * 63.10307 * 20 19 17
32 32 H 1.08998 * 108.83407 * 181.54414 * 20 19 17
33 33 H 1.08999 * 108.91747 * 170.80365 * 21 20 19
34 34 H 1.09003 * 108.91731 * 289.35146 * 21 20 19
35 35 H 1.09001 * 110.21477 * 66.22716 * 22 21 20
36 36 H 1.08994 * 110.21843 * 188.07221 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4978 2.0463 -1.4001
5 1 1.4478 2.6526 0.7000
6 1 3.5479 1.4400 0.7001
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0001
9 16 1.1292 -2.7280 0.0005
10 6 2.5157 -3.8915 0.0005
11 6 1.9872 -5.3028 -0.0001
12 8 0.7909 -5.5023 0.0000
13 7 2.8440 -6.3432 0.0003
14 6 2.3301 -7.7152 0.0003
15 1 1.3522 -7.8071 -0.4722
16 6 2.4404 -8.4342 1.3762
17 6 3.8850 -8.5985 1.0053
18 1 4.4440 -7.6686 1.1109
19 8 4.7021 -9.7247 1.2381
20 6 5.8780 -9.6448 0.4048
21 6 5.5423 -9.5531 -1.0789
22 6 4.4977 -8.4581 -1.3755
23 6 3.3316 -8.7456 -0.4475
24 1 2.8847 -9.7217 -0.6365
25 1 -0.4850 0.8401 -0.0004
26 1 3.1243 -3.7315 -0.8895
27 1 3.1244 -3.7315 0.8905
28 1 3.8007 -6.1837 0.0006
29 1 2.2730 -7.7819 2.2332
30 1 1.8870 -9.3716 1.4334
31 1 6.4528 -8.7638 0.6906
32 1 6.4886 -10.5321 0.5718
33 1 6.4536 -9.3320 -1.6344
34 1 5.1514 -10.5142 -1.4128
35 1 4.9139 -7.4732 -1.1636
36 1 4.1771 -8.5153 -2.4156
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000408411954.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:42:44
Heat of formation + Delta-G solvation = -40.411498 kcal
Electronic energy + Delta-G solvation = -18522.083429 eV
Core-core repulsion = 15520.091100 eV
Total energy + Delta-G solvation = -3001.992329 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 271.103 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.56341 -38.84332 -36.60673 -33.57400 -32.81811 -32.44128 -29.13757 -27.82338
-25.54087 -24.94193 -23.21142 -21.41143 -21.27441 -19.45283 -17.94589 -16.97549
-16.45693 -15.82402 -15.73221 -15.33801 -14.92883 -14.81786 -14.33816 -14.11634
-13.75846 -13.35609 -12.91380 -12.66112 -12.55790 -12.42717 -12.17884 -11.87006
-11.38222 -11.27712 -11.07599 -11.04094 -10.80253 -10.73878 -10.43852 -9.83606
-9.47880 -9.30096 -9.08305 -8.89891 -8.25986 -6.51947 -6.23181 -3.93991
2.95187 3.00412 3.21380 3.24926 3.27202 3.30472 3.64276 4.02151
4.18852 4.36001 4.53101 4.54602 4.66371 4.83606 4.86675 5.07367
5.11893 5.12456 5.21663 5.33273 5.43560 5.52498 5.57484 5.60323
5.68536 5.78751 5.83655 5.85559 5.92744 6.01361 6.10242 6.59176
6.82701 7.57858 7.61903 8.33570 8.54818 9.22166 10.84228
Molecular weight = 271.10amu
Principal moments of inertia in cm(-1)
A = 0.037057 B = 0.003592 C = 0.003433
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 755.417649 B = 7792.792489 C = 8153.647818
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.867 5.867
2 C 0.074 3.926
3 Si 0.919 3.081
4 H -0.277 1.277
5 H -0.282 1.282
6 H -0.272 1.272
7 C -0.537 4.537
8 H 0.073 0.927
9 S -0.058 6.058
10 C -0.154 4.154
11 C 0.535 3.465
12 O -0.512 6.512
13 N -0.721 5.721
14 C 0.143 3.857
15 H 0.111 0.889
16 C -0.125 4.125
17 C 0.044 3.956
18 H 0.077 0.923
19 O -0.362 6.362
20 C 0.059 3.941
21 C -0.151 4.151
22 C -0.107 4.107
23 C -0.168 4.168
24 H 0.110 0.890
25 H 0.269 0.731
26 H 0.090 0.910
27 H 0.090 0.910
28 H 0.397 0.603
29 H 0.081 0.919
30 H 0.101 0.899
31 H 0.050 0.950
32 H 0.092 0.908
33 H 0.075 0.925
34 H 0.069 0.931
35 H 0.065 0.935
36 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.147 -18.554 -0.944 22.197
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.502 5.502
2 C -0.135 4.135
3 Si 0.745 3.255
4 H -0.203 1.203
5 H -0.207 1.207
6 H -0.197 1.197
7 C -0.685 4.685
8 H 0.091 0.909
9 S 0.168 5.832
10 C -0.305 4.305
11 C 0.322 3.678
12 O -0.385 6.385
13 N -0.375 5.375
14 C 0.036 3.964
15 H 0.129 0.871
16 C -0.164 4.164
17 C -0.015 4.015
18 H 0.095 0.905
19 O -0.281 6.281
20 C -0.017 4.017
21 C -0.189 4.189
22 C -0.144 4.144
23 C -0.188 4.188
24 H 0.128 0.872
25 H 0.078 0.922
26 H 0.108 0.892
27 H 0.108 0.892
28 H 0.232 0.768
29 H 0.100 0.900
30 H 0.119 0.881
31 H 0.069 0.931
32 H 0.110 0.890
33 H 0.093 0.907
34 H 0.087 0.913
35 H 0.084 0.916
36 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 9.950 -18.926 -0.816 21.398
hybrid contribution 2.637 1.479 -0.180 3.029
sum 12.587 -17.447 -0.996 21.536
Atomic orbital electron populations
1.70018 1.05957 1.27487 1.46787 1.24992 0.95026 0.99031 0.94498
0.86164 0.79413 0.81552 0.78355 1.20261 1.20731 1.19694 1.22868
0.94911 0.91657 1.59057 0.90926 1.85409 1.04756 0.96281 1.96721
1.23540 1.06706 0.95254 1.04966 1.20346 0.86536 0.86185 0.74774
1.90708 1.15285 1.85490 1.47032 1.45758 1.09712 1.04501 1.77570
1.21183 0.98578 0.80935 0.95701 0.87111 1.23263 0.92589 1.01470
0.99083 1.23448 0.92717 0.89424 0.95874 0.90489 1.88068 1.34309
1.42657 1.63034 1.22579 0.87077 1.02311 0.89774 1.22089 0.99964
1.00092 0.96765 1.21397 0.94623 0.98376 1.00019 1.23594 0.96879
1.00374 0.97924 0.87210 0.92155 0.89177 0.89171 0.76781 0.90049
0.88095 0.93140 0.88968 0.90673 0.91259 0.91599 0.91041
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -26.04 13.22 55.49 0.73 -25.30 16
2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16
3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16
4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16
7 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16
8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16
9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16
10 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16
11 C 0.54 9.73 7.85 -10.98 -0.09 9.65 16
12 O -0.51 -11.37 15.53 5.56 0.09 -11.28 16
13 N -0.72 -9.40 4.85 -57.14 -0.28 -9.67 16
14 C 0.14 1.67 4.41 -71.31 -0.31 1.35 16
15 H 0.11 1.46 7.59 -51.93 -0.39 1.07 16
16 C -0.13 -1.34 7.81 -30.05 -0.23 -1.58 16
17 C 0.04 0.44 3.86 -30.05 -0.12 0.33 16
18 H 0.08 0.76 6.46 -51.93 -0.34 0.43 16
19 O -0.36 -3.90 11.02 -34.87 -0.38 -4.28 16
20 C 0.06 0.46 6.66 36.85 0.25 0.70 16
21 C -0.15 -1.04 5.95 -26.41 -0.16 -1.20 16
22 C -0.11 -0.86 5.98 -26.72 -0.16 -1.02 16
23 C -0.17 -1.58 3.30 -94.05 -0.31 -1.89 16
24 H 0.11 0.99 8.13 -51.93 -0.42 0.57 16
25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16
26 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16
27 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16
28 H 0.40 4.15 6.42 -40.82 -0.26 3.89 16
29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16
31 H 0.05 0.36 8.09 -51.93 -0.42 -0.06 16
32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16
33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16
34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
35 H 0.07 0.52 6.89 -51.93 -0.36 0.16 16
36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
LS Contribution 307.89 15.07 4.64 4.64
Total: -1.00 -33.56 307.89 -8.27 -41.83
By element:
Atomic # 1 Polarization: 6.10 SS G_CDS: -5.12 Total: 0.99 kcal
Atomic # 6 Polarization: -8.66 SS G_CDS: -0.71 Total: -9.38 kcal
Atomic # 7 Polarization: -35.44 SS G_CDS: 0.46 Total: -34.98 kcal
Atomic # 8 Polarization: -15.27 SS G_CDS: -0.30 Total: -15.57 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal
Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal
Total LS contribution 4.64 Total: 4.64 kcal
Total: -33.56 -8.27 -41.83 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000408411954.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.414 kcal
(2) G-P(sol) polarization free energy of solvation -33.557 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.142 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.411 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds