Wall clock time and date at job start Mon Mar 30 2020 05:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99737 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99751 * 3 2 1 6 6 H 1.48500 * 109.46738 * 149.99993 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99561 * 179.97438 * 13 11 10 15 15 H 1.08998 * 113.18147 * 28.11373 * 14 13 11 16 16 C 1.55637 * 114.06491 * 255.49252 * 14 13 11 17 17 C 1.50050 * 84.27692 * 282.36248 * 16 14 13 18 18 H 1.09003 * 112.10705 * 75.25820 * 17 16 14 19 19 O 1.41071 * 127.17111 * 219.01482 * 17 16 14 20 20 C 1.44350 * 109.41200 * 163.37989 * 19 17 16 21 21 C 1.52390 * 112.70002 * 302.27534 * 20 19 17 22 22 C 1.54208 * 112.28777 * 50.07521 * 21 20 19 23 23 C 1.50510 * 114.06517 * 160.96482 * 14 13 11 24 24 H 1.09002 * 113.06527 * 191.70847 * 23 14 13 25 25 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 27 27 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 28 28 H 0.96993 * 120.00373 * 359.97438 * 13 11 10 29 29 H 1.08999 * 114.06248 * 36.19295 * 16 14 13 30 30 H 1.09001 * 114.06088 * 168.53488 * 16 14 13 31 31 H 1.09002 * 108.83357 * 63.10307 * 20 19 17 32 32 H 1.08998 * 108.83407 * 181.54414 * 20 19 17 33 33 H 1.08999 * 108.91747 * 170.80365 * 21 20 19 34 34 H 1.09003 * 108.91731 * 289.35146 * 21 20 19 35 35 H 1.09001 * 110.21477 * 66.22716 * 22 21 20 36 36 H 1.08994 * 110.21843 * 188.07221 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 2.3301 -7.7152 0.0003 15 1 1.3522 -7.8071 -0.4722 16 6 2.4404 -8.4342 1.3762 17 6 3.8850 -8.5985 1.0053 18 1 4.4440 -7.6686 1.1109 19 8 4.7021 -9.7247 1.2381 20 6 5.8780 -9.6448 0.4048 21 6 5.5423 -9.5531 -1.0789 22 6 4.4977 -8.4581 -1.3755 23 6 3.3316 -8.7456 -0.4475 24 1 2.8847 -9.7217 -0.6365 25 1 -0.4850 0.8401 -0.0004 26 1 3.1243 -3.7315 -0.8895 27 1 3.1244 -3.7315 0.8905 28 1 3.8007 -6.1837 0.0006 29 1 2.2730 -7.7819 2.2332 30 1 1.8870 -9.3716 1.4334 31 1 6.4528 -8.7638 0.6906 32 1 6.4886 -10.5321 0.5718 33 1 6.4536 -9.3320 -1.6344 34 1 5.1514 -10.5142 -1.4128 35 1 4.9139 -7.4732 -1.1636 36 1 4.1771 -8.5153 -2.4156 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408411954.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:44 Heat of formation + Delta-G solvation = -40.411498 kcal Electronic energy + Delta-G solvation = -18522.083429 eV Core-core repulsion = 15520.091100 eV Total energy + Delta-G solvation = -3001.992329 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.56341 -38.84332 -36.60673 -33.57400 -32.81811 -32.44128 -29.13757 -27.82338 -25.54087 -24.94193 -23.21142 -21.41143 -21.27441 -19.45283 -17.94589 -16.97549 -16.45693 -15.82402 -15.73221 -15.33801 -14.92883 -14.81786 -14.33816 -14.11634 -13.75846 -13.35609 -12.91380 -12.66112 -12.55790 -12.42717 -12.17884 -11.87006 -11.38222 -11.27712 -11.07599 -11.04094 -10.80253 -10.73878 -10.43852 -9.83606 -9.47880 -9.30096 -9.08305 -8.89891 -8.25986 -6.51947 -6.23181 -3.93991 2.95187 3.00412 3.21380 3.24926 3.27202 3.30472 3.64276 4.02151 4.18852 4.36001 4.53101 4.54602 4.66371 4.83606 4.86675 5.07367 5.11893 5.12456 5.21663 5.33273 5.43560 5.52498 5.57484 5.60323 5.68536 5.78751 5.83655 5.85559 5.92744 6.01361 6.10242 6.59176 6.82701 7.57858 7.61903 8.33570 8.54818 9.22166 10.84228 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037057 B = 0.003592 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.417649 B = 7792.792489 C = 8153.647818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.535 3.465 12 O -0.512 6.512 13 N -0.721 5.721 14 C 0.143 3.857 15 H 0.111 0.889 16 C -0.125 4.125 17 C 0.044 3.956 18 H 0.077 0.923 19 O -0.362 6.362 20 C 0.059 3.941 21 C -0.151 4.151 22 C -0.107 4.107 23 C -0.168 4.168 24 H 0.110 0.890 25 H 0.269 0.731 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.397 0.603 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.147 -18.554 -0.944 22.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.322 3.678 12 O -0.385 6.385 13 N -0.375 5.375 14 C 0.036 3.964 15 H 0.129 0.871 16 C -0.164 4.164 17 C -0.015 4.015 18 H 0.095 0.905 19 O -0.281 6.281 20 C -0.017 4.017 21 C -0.189 4.189 22 C -0.144 4.144 23 C -0.188 4.188 24 H 0.128 0.872 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.232 0.768 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.950 -18.926 -0.816 21.398 hybrid contribution 2.637 1.479 -0.180 3.029 sum 12.587 -17.447 -0.996 21.536 Atomic orbital electron populations 1.70018 1.05957 1.27487 1.46787 1.24992 0.95026 0.99031 0.94498 0.86164 0.79413 0.81552 0.78355 1.20261 1.20731 1.19694 1.22868 0.94911 0.91657 1.59057 0.90926 1.85409 1.04756 0.96281 1.96721 1.23540 1.06706 0.95254 1.04966 1.20346 0.86536 0.86185 0.74774 1.90708 1.15285 1.85490 1.47032 1.45758 1.09712 1.04501 1.77570 1.21183 0.98578 0.80935 0.95701 0.87111 1.23263 0.92589 1.01470 0.99083 1.23448 0.92717 0.89424 0.95874 0.90489 1.88068 1.34309 1.42657 1.63034 1.22579 0.87077 1.02311 0.89774 1.22089 0.99964 1.00092 0.96765 1.21397 0.94623 0.98376 1.00019 1.23594 0.96879 1.00374 0.97924 0.87210 0.92155 0.89177 0.89171 0.76781 0.90049 0.88095 0.93140 0.88968 0.90673 0.91259 0.91599 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.04 13.22 55.49 0.73 -25.30 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 11 C 0.54 9.73 7.85 -10.98 -0.09 9.65 16 12 O -0.51 -11.37 15.53 5.56 0.09 -11.28 16 13 N -0.72 -9.40 4.85 -57.14 -0.28 -9.67 16 14 C 0.14 1.67 4.41 -71.31 -0.31 1.35 16 15 H 0.11 1.46 7.59 -51.93 -0.39 1.07 16 16 C -0.13 -1.34 7.81 -30.05 -0.23 -1.58 16 17 C 0.04 0.44 3.86 -30.05 -0.12 0.33 16 18 H 0.08 0.76 6.46 -51.93 -0.34 0.43 16 19 O -0.36 -3.90 11.02 -34.87 -0.38 -4.28 16 20 C 0.06 0.46 6.66 36.85 0.25 0.70 16 21 C -0.15 -1.04 5.95 -26.41 -0.16 -1.20 16 22 C -0.11 -0.86 5.98 -26.72 -0.16 -1.02 16 23 C -0.17 -1.58 3.30 -94.05 -0.31 -1.89 16 24 H 0.11 0.99 8.13 -51.93 -0.42 0.57 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 27 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 28 H 0.40 4.15 6.42 -40.82 -0.26 3.89 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.52 6.89 -51.93 -0.36 0.16 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 307.89 15.07 4.64 4.64 Total: -1.00 -33.56 307.89 -8.27 -41.83 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.12 Total: 0.99 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.71 Total: -9.38 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.46 Total: -34.98 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.30 Total: -15.57 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.56 -8.27 -41.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408411954.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.414 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds