Wall clock time and date at job start Mon Mar 30 2020 05:42:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31630 * 1
3 3 Si 1.86800 * 120.00086 * 2 1
4 4 H 1.48501 * 109.46755 * 269.99737 * 3 2 1
5 5 H 1.48495 * 109.46931 * 29.99751 * 3 2 1
6 6 H 1.48500 * 109.46738 * 149.99993 * 3 2 1
7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1
9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1
10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2
11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7
12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9
13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9
14 14 C 1.46504 * 119.99561 * 179.97438 * 13 11 10
15 15 H 1.08998 * 113.18147 * 28.11373 * 14 13 11
16 16 C 1.55637 * 114.06491 * 255.49252 * 14 13 11
17 17 C 1.50050 * 84.27692 * 282.36248 * 16 14 13
18 18 H 1.09003 * 112.10705 * 75.25820 * 17 16 14
19 19 O 1.41071 * 127.17111 * 219.01482 * 17 16 14
20 20 C 1.44350 * 109.41200 * 163.37989 * 19 17 16
21 21 C 1.52390 * 112.70002 * 302.27534 * 20 19 17
22 22 C 1.54208 * 112.28777 * 50.07521 * 21 20 19
23 23 C 1.50510 * 114.06517 * 160.96482 * 14 13 11
24 24 H 1.09002 * 113.06527 * 191.70847 * 23 14 13
25 25 H 0.97005 * 119.99878 * 0.02562 * 1 2 3
26 26 H 1.09005 * 109.46889 * 299.99975 * 10 9 7
27 27 H 1.09000 * 109.47231 * 59.99947 * 10 9 7
28 28 H 0.96993 * 120.00373 * 359.97438 * 13 11 10
29 29 H 1.08999 * 114.06248 * 36.19295 * 16 14 13
30 30 H 1.09001 * 114.06088 * 168.53488 * 16 14 13
31 31 H 1.09002 * 108.83357 * 63.10307 * 20 19 17
32 32 H 1.08998 * 108.83407 * 181.54414 * 20 19 17
33 33 H 1.08999 * 108.91747 * 170.80365 * 21 20 19
34 34 H 1.09003 * 108.91731 * 289.35146 * 21 20 19
35 35 H 1.09001 * 110.21477 * 66.22716 * 22 21 20
36 36 H 1.08994 * 110.21843 * 188.07221 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4978 2.0463 -1.4001
5 1 1.4478 2.6526 0.7000
6 1 3.5479 1.4400 0.7001
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0001
9 16 1.1292 -2.7280 0.0005
10 6 2.5157 -3.8915 0.0005
11 6 1.9872 -5.3028 -0.0001
12 8 0.7909 -5.5023 0.0000
13 7 2.8440 -6.3432 0.0003
14 6 2.3301 -7.7152 0.0003
15 1 1.3522 -7.8071 -0.4722
16 6 2.4404 -8.4342 1.3762
17 6 3.8850 -8.5985 1.0053
18 1 4.4440 -7.6686 1.1109
19 8 4.7021 -9.7247 1.2381
20 6 5.8780 -9.6448 0.4048
21 6 5.5423 -9.5531 -1.0789
22 6 4.4977 -8.4581 -1.3755
23 6 3.3316 -8.7456 -0.4475
24 1 2.8847 -9.7217 -0.6365
25 1 -0.4850 0.8401 -0.0004
26 1 3.1243 -3.7315 -0.8895
27 1 3.1244 -3.7315 0.8905
28 1 3.8007 -6.1837 0.0006
29 1 2.2730 -7.7819 2.2332
30 1 1.8870 -9.3716 1.4334
31 1 6.4528 -8.7638 0.6906
32 1 6.4886 -10.5321 0.5718
33 1 6.4536 -9.3320 -1.6344
34 1 5.1514 -10.5142 -1.4128
35 1 4.9139 -7.4732 -1.1636
36 1 4.1771 -8.5153 -2.4156
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000408411954.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:42:43
Heat of formation + Delta-G solvation = -63.753733 kcal
Electronic energy + Delta-G solvation = -18523.095624 eV
Core-core repulsion = 15520.091100 eV
Total energy + Delta-G solvation = -3003.004524 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 271.103 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-42.44207 -40.17544 -37.53389 -34.58611 -34.24996 -34.05679 -30.64501 -28.51859
-27.67566 -25.83508 -23.98311 -22.52906 -22.08236 -20.48574 -19.88444 -18.16063
-17.48193 -17.00225 -16.87667 -16.55498 -16.36896 -16.07234 -15.88363 -15.03524
-14.73364 -14.71023 -14.41817 -13.98565 -13.52785 -13.24039 -13.16772 -13.08972
-12.89058 -12.83696 -12.59874 -12.20878 -11.97573 -11.73819 -11.43055 -11.16359
-11.13996 -11.01430 -10.28032 -10.25141 -9.89905 -8.66644 -8.34531 -6.12649
1.25840 1.42980 1.46556 1.55411 1.57163 2.17790 2.27763 2.53985
2.99824 3.23448 3.30201 3.52463 3.75763 3.89428 3.93423 4.00261
4.15755 4.21939 4.29393 4.42858 4.49509 4.51462 4.67006 4.75343
4.82304 4.87232 4.91278 4.99382 5.09458 5.22951 5.32718 5.42146
5.48850 6.12620 6.19954 6.41888 7.06910 7.18817 8.74660
Molecular weight = 271.10amu
Principal moments of inertia in cm(-1)
A = 0.037057 B = 0.003592 C = 0.003433
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 755.417649 B = 7792.792489 C = 8153.647818
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C 0.014 3.986
3 Si 0.999 3.001
4 H -0.268 1.268
5 H -0.278 1.278
6 H -0.258 1.258
7 C -0.547 4.547
8 H 0.083 0.917
9 S -0.149 6.149
10 C -0.130 4.130
11 C 0.539 3.461
12 O -0.559 6.559
13 N -0.695 5.695
14 C 0.132 3.868
15 H 0.093 0.907
16 C -0.124 4.124
17 C 0.045 3.955
18 H 0.081 0.919
19 O -0.382 6.382
20 C 0.051 3.949
21 C -0.146 4.146
22 C -0.109 4.109
23 C -0.153 4.153
24 H 0.116 0.884
25 H 0.271 0.729
26 H 0.112 0.888
27 H 0.110 0.890
28 H 0.413 0.587
29 H 0.069 0.931
30 H 0.112 0.888
31 H 0.058 0.942
32 H 0.107 0.893
33 H 0.093 0.907
34 H 0.070 0.930
35 H 0.069 0.931
36 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.036 -19.026 -1.266 24.283
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.191 4.191
3 Si 0.820 3.180
4 H -0.193 1.193
5 H -0.204 1.204
6 H -0.182 1.182
7 C -0.695 4.695
8 H 0.101 0.899
9 S 0.078 5.922
10 C -0.281 4.281
11 C 0.325 3.675
12 O -0.437 6.437
13 N -0.349 5.349
14 C 0.026 3.974
15 H 0.111 0.889
16 C -0.163 4.163
17 C -0.013 4.013
18 H 0.099 0.901
19 O -0.301 6.301
20 C -0.024 4.024
21 C -0.183 4.183
22 C -0.147 4.147
23 C -0.173 4.173
24 H 0.134 0.866
25 H 0.080 0.920
26 H 0.130 0.870
27 H 0.128 0.872
28 H 0.252 0.748
29 H 0.088 0.912
30 H 0.130 0.870
31 H 0.076 0.924
32 H 0.125 0.875
33 H 0.112 0.888
34 H 0.089 0.911
35 H 0.088 0.912
36 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 12.898 -19.440 -1.139 23.357
hybrid contribution 1.793 1.466 -0.073 2.317
sum 14.691 -17.974 -1.212 23.245
Atomic orbital electron populations
1.70184 1.07987 1.28620 1.47982 1.26124 0.95949 1.03311 0.93713
0.84953 0.78206 0.76021 0.78799 1.19286 1.20369 1.18169 1.23215
0.95384 0.92010 1.58914 0.89852 1.85590 1.10395 0.99175 1.97056
1.23375 1.03682 0.94168 1.06914 1.20073 0.86209 0.86538 0.74657
1.90699 1.17304 1.85980 1.49685 1.45438 1.09940 1.04109 1.75418
1.21292 0.98731 0.80378 0.97047 0.88863 1.23256 0.93801 1.01536
0.97722 1.23364 0.92278 0.89647 0.96026 0.90130 1.88048 1.35283
1.42737 1.64022 1.22813 0.86241 1.03484 0.89897 1.22056 1.00302
0.99606 0.96356 1.21467 0.94296 0.99176 0.99758 1.23495 0.96284
0.99363 0.98124 0.86623 0.91989 0.87025 0.87151 0.74846 0.91235
0.86966 0.92408 0.87498 0.88824 0.91116 0.91202 0.90787
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -55.78 13.22 21.65 0.29 -55.50 16
2 C 0.01 0.78 5.49 84.86 0.47 1.25 16
3 Si 1.00 43.23 29.55 68.60 2.03 45.25 16
4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16
5 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16
6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16
7 C -0.55 -31.00 9.50 67.96 0.65 -30.35 16
8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16
9 S -0.15 -8.21 20.57 -56.49 -1.16 -9.38 16
10 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16
11 C 0.54 19.41 7.85 87.66 0.69 20.10 16
12 O -0.56 -25.48 15.53 -3.04 -0.05 -25.53 16
13 N -0.69 -17.16 4.85 -453.07 -2.20 -19.36 16
14 C 0.13 2.96 4.41 42.80 0.19 3.15 16
15 H 0.09 2.48 7.59 -2.39 -0.02 2.47 16
16 C -0.12 -2.56 7.81 28.45 0.22 -2.34 16
17 C 0.05 0.83 3.86 28.45 0.11 0.94 16
18 H 0.08 1.40 6.46 -2.39 -0.02 1.38 16
19 O -0.38 -7.37 11.02 -147.68 -1.63 -9.00 16
20 C 0.05 0.65 6.66 71.78 0.48 1.13 16
21 C -0.15 -1.54 5.95 30.80 0.18 -1.36 16
22 C -0.11 -1.47 5.98 30.60 0.18 -1.29 16
23 C -0.15 -2.58 3.30 -13.01 -0.04 -2.62 16
24 H 0.12 1.86 8.13 -2.39 -0.02 1.84 16
25 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16
26 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16
27 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16
28 H 0.41 7.61 6.42 -92.71 -0.60 7.01 16
29 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16
30 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16
31 H 0.06 0.65 8.09 -2.39 -0.02 0.63 16
32 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16
33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16
34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16
35 H 0.07 0.88 6.89 -2.39 -0.02 0.87 16
36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16
Total: -1.00 -74.29 307.89 1.33 -72.96
By element:
Atomic # 1 Polarization: 16.05 SS G_CDS: 0.49 Total: 16.54 kcal
Atomic # 6 Polarization: -19.55 SS G_CDS: 3.56 Total: -15.99 kcal
Atomic # 7 Polarization: -72.94 SS G_CDS: -1.91 Total: -74.85 kcal
Atomic # 8 Polarization: -32.86 SS G_CDS: -1.68 Total: -34.54 kcal
Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal
Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.38 kcal
Total: -74.29 1.33 -72.96 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000408411954.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.206 kcal
(2) G-P(sol) polarization free energy of solvation -74.286 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.079 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.960 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.754 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds