Wall clock time and date at job start Mon Mar 30 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99737 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99751 * 3 2 1 6 6 H 1.48500 * 109.46738 * 149.99993 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99561 * 179.97438 * 13 11 10 15 15 H 1.08998 * 113.18147 * 28.11373 * 14 13 11 16 16 C 1.55637 * 114.06491 * 255.49252 * 14 13 11 17 17 C 1.50050 * 84.27692 * 282.36248 * 16 14 13 18 18 H 1.09003 * 112.10705 * 75.25820 * 17 16 14 19 19 O 1.41071 * 127.17111 * 219.01482 * 17 16 14 20 20 C 1.44350 * 109.41200 * 163.37989 * 19 17 16 21 21 C 1.52390 * 112.70002 * 302.27534 * 20 19 17 22 22 C 1.54208 * 112.28777 * 50.07521 * 21 20 19 23 23 C 1.50510 * 114.06517 * 160.96482 * 14 13 11 24 24 H 1.09002 * 113.06527 * 191.70847 * 23 14 13 25 25 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 27 27 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 28 28 H 0.96993 * 120.00373 * 359.97438 * 13 11 10 29 29 H 1.08999 * 114.06248 * 36.19295 * 16 14 13 30 30 H 1.09001 * 114.06088 * 168.53488 * 16 14 13 31 31 H 1.09002 * 108.83357 * 63.10307 * 20 19 17 32 32 H 1.08998 * 108.83407 * 181.54414 * 20 19 17 33 33 H 1.08999 * 108.91747 * 170.80365 * 21 20 19 34 34 H 1.09003 * 108.91731 * 289.35146 * 21 20 19 35 35 H 1.09001 * 110.21477 * 66.22716 * 22 21 20 36 36 H 1.08994 * 110.21843 * 188.07221 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 2.3301 -7.7152 0.0003 15 1 1.3522 -7.8071 -0.4722 16 6 2.4404 -8.4342 1.3762 17 6 3.8850 -8.5985 1.0053 18 1 4.4440 -7.6686 1.1109 19 8 4.7021 -9.7247 1.2381 20 6 5.8780 -9.6448 0.4048 21 6 5.5423 -9.5531 -1.0789 22 6 4.4977 -8.4581 -1.3755 23 6 3.3316 -8.7456 -0.4475 24 1 2.8847 -9.7217 -0.6365 25 1 -0.4850 0.8401 -0.0004 26 1 3.1243 -3.7315 -0.8895 27 1 3.1244 -3.7315 0.8905 28 1 3.8007 -6.1837 0.0006 29 1 2.2730 -7.7819 2.2332 30 1 1.8870 -9.3716 1.4334 31 1 6.4528 -8.7638 0.6906 32 1 6.4886 -10.5321 0.5718 33 1 6.4536 -9.3320 -1.6344 34 1 5.1514 -10.5142 -1.4128 35 1 4.9139 -7.4732 -1.1636 36 1 4.1771 -8.5153 -2.4156 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408411954.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:43 Heat of formation + Delta-G solvation = -63.753733 kcal Electronic energy + Delta-G solvation = -18523.095624 eV Core-core repulsion = 15520.091100 eV Total energy + Delta-G solvation = -3003.004524 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.44207 -40.17544 -37.53389 -34.58611 -34.24996 -34.05679 -30.64501 -28.51859 -27.67566 -25.83508 -23.98311 -22.52906 -22.08236 -20.48574 -19.88444 -18.16063 -17.48193 -17.00225 -16.87667 -16.55498 -16.36896 -16.07234 -15.88363 -15.03524 -14.73364 -14.71023 -14.41817 -13.98565 -13.52785 -13.24039 -13.16772 -13.08972 -12.89058 -12.83696 -12.59874 -12.20878 -11.97573 -11.73819 -11.43055 -11.16359 -11.13996 -11.01430 -10.28032 -10.25141 -9.89905 -8.66644 -8.34531 -6.12649 1.25840 1.42980 1.46556 1.55411 1.57163 2.17790 2.27763 2.53985 2.99824 3.23448 3.30201 3.52463 3.75763 3.89428 3.93423 4.00261 4.15755 4.21939 4.29393 4.42858 4.49509 4.51462 4.67006 4.75343 4.82304 4.87232 4.91278 4.99382 5.09458 5.22951 5.32718 5.42146 5.48850 6.12620 6.19954 6.41888 7.06910 7.18817 8.74660 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037057 B = 0.003592 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.417649 B = 7792.792489 C = 8153.647818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.130 4.130 11 C 0.539 3.461 12 O -0.559 6.559 13 N -0.695 5.695 14 C 0.132 3.868 15 H 0.093 0.907 16 C -0.124 4.124 17 C 0.045 3.955 18 H 0.081 0.919 19 O -0.382 6.382 20 C 0.051 3.949 21 C -0.146 4.146 22 C -0.109 4.109 23 C -0.153 4.153 24 H 0.116 0.884 25 H 0.271 0.729 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.413 0.587 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.036 -19.026 -1.266 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.281 4.281 11 C 0.325 3.675 12 O -0.437 6.437 13 N -0.349 5.349 14 C 0.026 3.974 15 H 0.111 0.889 16 C -0.163 4.163 17 C -0.013 4.013 18 H 0.099 0.901 19 O -0.301 6.301 20 C -0.024 4.024 21 C -0.183 4.183 22 C -0.147 4.147 23 C -0.173 4.173 24 H 0.134 0.866 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.252 0.748 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.898 -19.440 -1.139 23.357 hybrid contribution 1.793 1.466 -0.073 2.317 sum 14.691 -17.974 -1.212 23.245 Atomic orbital electron populations 1.70184 1.07987 1.28620 1.47982 1.26124 0.95949 1.03311 0.93713 0.84953 0.78206 0.76021 0.78799 1.19286 1.20369 1.18169 1.23215 0.95384 0.92010 1.58914 0.89852 1.85590 1.10395 0.99175 1.97056 1.23375 1.03682 0.94168 1.06914 1.20073 0.86209 0.86538 0.74657 1.90699 1.17304 1.85980 1.49685 1.45438 1.09940 1.04109 1.75418 1.21292 0.98731 0.80378 0.97047 0.88863 1.23256 0.93801 1.01536 0.97722 1.23364 0.92278 0.89647 0.96026 0.90130 1.88048 1.35283 1.42737 1.64022 1.22813 0.86241 1.03484 0.89897 1.22056 1.00302 0.99606 0.96356 1.21467 0.94296 0.99176 0.99758 1.23495 0.96284 0.99363 0.98124 0.86623 0.91989 0.87025 0.87151 0.74846 0.91235 0.86966 0.92408 0.87498 0.88824 0.91116 0.91202 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.78 13.22 21.65 0.29 -55.50 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.23 29.55 68.60 2.03 45.25 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.55 -31.00 9.50 67.96 0.65 -30.35 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.21 20.57 -56.49 -1.16 -9.38 16 10 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 11 C 0.54 19.41 7.85 87.66 0.69 20.10 16 12 O -0.56 -25.48 15.53 -3.04 -0.05 -25.53 16 13 N -0.69 -17.16 4.85 -453.07 -2.20 -19.36 16 14 C 0.13 2.96 4.41 42.80 0.19 3.15 16 15 H 0.09 2.48 7.59 -2.39 -0.02 2.47 16 16 C -0.12 -2.56 7.81 28.45 0.22 -2.34 16 17 C 0.05 0.83 3.86 28.45 0.11 0.94 16 18 H 0.08 1.40 6.46 -2.39 -0.02 1.38 16 19 O -0.38 -7.37 11.02 -147.68 -1.63 -9.00 16 20 C 0.05 0.65 6.66 71.78 0.48 1.13 16 21 C -0.15 -1.54 5.95 30.80 0.18 -1.36 16 22 C -0.11 -1.47 5.98 30.60 0.18 -1.29 16 23 C -0.15 -2.58 3.30 -13.01 -0.04 -2.62 16 24 H 0.12 1.86 8.13 -2.39 -0.02 1.84 16 25 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 26 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 27 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 28 H 0.41 7.61 6.42 -92.71 -0.60 7.01 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 30 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 0.65 8.09 -2.39 -0.02 0.63 16 32 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.88 6.89 -2.39 -0.02 0.87 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -74.29 307.89 1.33 -72.96 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.49 Total: 16.54 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 3.56 Total: -15.99 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -1.91 Total: -74.85 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.68 Total: -34.54 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.38 kcal Total: -74.29 1.33 -72.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408411954.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.206 kcal (2) G-P(sol) polarization free energy of solvation -74.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds