Wall clock time and date at job start Mon Mar 30 2020 04:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00137 * 2 1 4 4 H 1.48505 * 109.47029 * 270.00231 * 3 2 1 5 5 H 1.48504 * 109.47088 * 29.99872 * 3 2 1 6 6 H 1.48493 * 109.47444 * 150.00169 * 3 2 1 7 7 C 1.37881 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99737 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99790 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46780 * 179.97438 * 9 7 2 11 11 S 1.65598 * 119.99969 * 161.69388 * 10 9 7 12 12 O 1.42104 * 106.40047 * 312.98387 * 11 10 9 13 13 O 1.42102 * 106.40244 * 180.02562 * 11 10 9 14 14 C 1.76208 * 107.22038 * 66.51863 * 11 10 9 15 15 C 1.34563 * 126.58099 * 330.69491 * 14 11 10 16 16 N 1.33999 * 108.02876 * 179.97438 * 15 14 11 17 17 C 1.30905 * 109.30406 * 359.89394 * 16 15 14 18 18 N 1.34813 * 108.61308 * 0.20655 * 17 16 15 19 19 C 1.47003 * 111.18625 * 179.69196 * 18 17 16 20 20 C 1.54394 * 105.52494 * 17.13680 * 19 18 17 21 21 C 1.51575 * 141.44538 * 180.20295 * 17 16 15 22 22 H 0.96996 * 120.00308 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47032 * 59.99687 * 9 7 2 24 24 H 1.09001 * 109.46969 * 299.99277 * 9 7 2 25 25 H 0.97003 * 119.99807 * 341.68953 * 10 9 7 26 26 H 1.07995 * 125.98371 * 0.02562 * 15 14 11 27 27 H 1.08997 * 110.23446 * 136.13975 * 19 18 17 28 28 H 1.09002 * 110.23703 * 258.02549 * 19 18 17 29 29 H 1.08993 * 110.96371 * 216.14818 * 20 19 18 30 30 H 1.08998 * 110.97312 * 92.38710 * 20 19 18 31 31 H 1.08998 * 110.47634 * 282.15824 * 21 17 16 32 32 H 1.08990 * 110.47896 * 44.78028 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 16 5.5594 -2.9022 -0.4520 12 8 5.7891 -2.1802 -1.6541 13 8 5.7206 -4.3102 -0.3474 14 6 6.6149 -2.1896 0.7658 15 6 6.3557 -1.1017 1.5142 16 7 7.4082 -0.8896 2.3160 17 6 8.3132 -1.8091 2.0945 18 7 7.8587 -2.6374 1.1328 19 6 8.8382 -3.6919 0.8333 20 6 9.8130 -3.7026 2.0306 21 6 9.6887 -2.2528 2.5512 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8745 -0.6801 -0.8912 25 1 3.4097 -3.2983 0.2633 26 1 5.4566 -0.5047 1.4760 27 1 8.3386 -4.6566 0.7455 28 1 9.3726 -3.4594 -0.0878 29 1 10.8308 -3.9134 1.7029 30 1 9.4926 -4.4178 2.7881 31 1 10.4594 -1.6215 2.1089 32 1 9.7547 -2.2313 3.6389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487354408.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:09 Heat of formation + Delta-G solvation = -0.366399 kcal Electronic energy + Delta-G solvation = -18946.467575 eV Core-core repulsion = 15842.671388 eV Total energy + Delta-G solvation = -3103.796186 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.56284 -36.96721 -36.61279 -35.57747 -34.91552 -32.27979 -32.09611 -28.99563 -27.57600 -27.46800 -22.62239 -22.14322 -21.94828 -20.46907 -19.09338 -17.75566 -17.41966 -16.81379 -16.18126 -15.76758 -15.29491 -14.64298 -14.34100 -14.14717 -14.04297 -13.64530 -13.55481 -13.02138 -12.54250 -12.48319 -12.11178 -12.02116 -11.85380 -11.73053 -11.54072 -11.41394 -10.92162 -10.65902 -10.06002 -10.03601 -9.80243 -9.57798 -8.99613 -8.78008 -8.58419 -6.21819 -4.24252 0.67745 1.49619 2.42262 2.90925 3.24697 3.30391 3.32954 3.44333 3.55001 3.84812 4.07124 4.28184 4.29839 4.38961 4.88827 4.99562 5.06852 5.09242 5.12736 5.25840 5.28602 5.44685 5.49241 5.89316 6.07746 6.55354 6.75538 6.79897 6.84089 7.32539 7.71562 7.82941 8.32579 8.79190 9.35306 10.90287 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028180 B = 0.006049 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.369197 B = 4627.426787 C = 5266.527213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.870 3.130 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.533 4.533 8 H 0.084 0.916 9 C 0.211 3.789 10 N -1.086 6.086 11 S 2.716 3.284 12 O -0.951 6.951 13 O -0.974 6.974 14 C -0.572 4.572 15 C 0.094 3.906 16 N -0.485 5.485 17 C 0.218 3.782 18 N -0.430 5.430 19 C 0.084 3.916 20 C -0.127 4.127 21 C -0.044 4.044 22 H 0.268 0.732 23 H 0.021 0.979 24 H 0.038 0.962 25 H 0.420 0.580 26 H 0.195 0.805 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.705 -6.496 4.323 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.127 4.127 3 Si 0.696 3.304 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.572 4.572 8 H 0.102 0.898 9 C 0.087 3.913 10 N -0.850 5.850 11 S 2.798 3.202 12 O -0.940 6.940 13 O -0.964 6.964 14 C -0.764 4.764 15 C -0.060 4.060 16 N -0.204 5.204 17 C -0.047 4.047 18 N -0.112 5.112 19 C -0.037 4.037 20 C -0.165 4.165 21 C -0.083 4.083 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.056 0.944 25 H 0.256 0.744 26 H 0.211 0.789 27 H 0.125 0.875 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 20.029 -6.234 3.942 21.344 hybrid contribution -0.027 0.498 0.176 0.529 sum 20.001 -5.736 4.117 21.211 Atomic orbital electron populations 1.69865 1.06187 1.27435 1.49189 1.24844 0.94834 0.99036 0.94003 0.86940 0.80529 0.83655 0.79277 1.19507 1.20664 1.18559 1.20991 0.87773 0.95362 1.53064 0.89770 1.19662 0.98102 0.77054 0.96462 1.55127 1.26493 1.17639 1.85740 1.01362 0.72863 0.72656 0.73298 1.93609 1.85353 1.74229 1.40820 1.93528 1.86345 1.29511 1.86990 1.33652 1.01062 1.14124 1.27601 1.22823 0.97973 0.93746 0.91505 1.69974 1.01165 1.23910 1.25355 1.24856 0.97506 0.90185 0.92136 1.45934 1.11710 1.23912 1.29633 1.22735 0.89209 0.91391 1.00335 1.22771 1.00225 0.96717 0.96802 1.20765 0.88698 0.95535 1.03312 0.92175 0.96123 0.94443 0.74375 0.78878 0.87543 0.88496 0.87551 0.88951 0.88014 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.96 55.43 0.77 -25.25 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 20.41 27.47 -169.99 -4.67 15.74 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 7 C -0.53 -14.22 9.83 -34.44 -0.34 -14.55 16 8 H 0.08 2.38 7.92 -52.49 -0.42 1.96 16 9 C 0.21 4.77 4.54 -5.19 -0.02 4.75 16 10 N -1.09 -21.05 5.94 -11.65 -0.07 -21.12 16 11 S 2.72 49.93 5.91 -107.50 -0.64 49.30 16 12 O -0.95 -20.07 17.39 -57.17 -0.99 -21.07 16 13 O -0.97 -18.24 18.02 -57.17 -1.03 -19.27 16 14 C -0.57 -10.02 7.22 -16.45 -0.12 -10.14 16 15 C 0.09 1.71 11.37 -17.91 -0.20 1.51 16 16 N -0.49 -8.59 11.26 -10.56 -0.12 -8.71 16 17 C 0.22 3.14 8.58 -154.86 -1.33 1.81 16 18 N -0.43 -6.38 3.61 -111.32 -0.40 -6.78 16 19 C 0.08 0.82 7.78 -3.04 -0.02 0.79 16 20 C -0.13 -0.74 7.17 -25.19 -0.18 -0.92 16 21 C -0.04 -0.35 6.86 -26.64 -0.18 -0.53 16 22 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.02 0.45 4.75 -51.93 -0.25 0.20 16 24 H 0.04 0.86 7.08 -51.93 -0.37 0.50 16 25 H 0.42 7.51 8.57 -34.47 -0.30 7.21 16 26 H 0.19 3.44 5.39 -52.49 -0.28 3.15 16 27 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 283.99 15.07 4.28 4.28 Total: -1.00 -35.51 283.99 -8.67 -44.18 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -3.31 Total: 3.96 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -2.50 Total: -15.27 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: 0.18 Total: -61.86 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -2.02 Total: -40.34 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Atomic # 16 Polarization: 49.93 SS G_CDS: -0.64 Total: 49.30 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -35.51 -8.67 -44.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487354408.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.816 kcal (2) G-P(sol) polarization free energy of solvation -35.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds