Wall clock time and date at job start Mon Mar 30 2020 04:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00137 * 2 1 4 4 H 1.48505 * 109.47029 * 270.00231 * 3 2 1 5 5 H 1.48504 * 109.47088 * 29.99872 * 3 2 1 6 6 H 1.48493 * 109.47444 * 150.00169 * 3 2 1 7 7 C 1.37881 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99737 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99790 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46780 * 179.97438 * 9 7 2 11 11 S 1.65598 * 119.99969 * 161.69388 * 10 9 7 12 12 O 1.42104 * 106.40047 * 312.98387 * 11 10 9 13 13 O 1.42102 * 106.40244 * 180.02562 * 11 10 9 14 14 C 1.76208 * 107.22038 * 66.51863 * 11 10 9 15 15 C 1.34563 * 126.58099 * 330.69491 * 14 11 10 16 16 N 1.33999 * 108.02876 * 179.97438 * 15 14 11 17 17 C 1.30905 * 109.30406 * 359.89394 * 16 15 14 18 18 N 1.34813 * 108.61308 * 0.20655 * 17 16 15 19 19 C 1.47003 * 111.18625 * 179.69196 * 18 17 16 20 20 C 1.54394 * 105.52494 * 17.13680 * 19 18 17 21 21 C 1.51575 * 141.44538 * 180.20295 * 17 16 15 22 22 H 0.96996 * 120.00308 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47032 * 59.99687 * 9 7 2 24 24 H 1.09001 * 109.46969 * 299.99277 * 9 7 2 25 25 H 0.97003 * 119.99807 * 341.68953 * 10 9 7 26 26 H 1.07995 * 125.98371 * 0.02562 * 15 14 11 27 27 H 1.08997 * 110.23446 * 136.13975 * 19 18 17 28 28 H 1.09002 * 110.23703 * 258.02549 * 19 18 17 29 29 H 1.08993 * 110.96371 * 216.14818 * 20 19 18 30 30 H 1.08998 * 110.97312 * 92.38710 * 20 19 18 31 31 H 1.08998 * 110.47634 * 282.15824 * 21 17 16 32 32 H 1.08990 * 110.47896 * 44.78028 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 16 5.5594 -2.9022 -0.4520 12 8 5.7891 -2.1802 -1.6541 13 8 5.7206 -4.3102 -0.3474 14 6 6.6149 -2.1896 0.7658 15 6 6.3557 -1.1017 1.5142 16 7 7.4082 -0.8896 2.3160 17 6 8.3132 -1.8091 2.0945 18 7 7.8587 -2.6374 1.1328 19 6 8.8382 -3.6919 0.8333 20 6 9.8130 -3.7026 2.0306 21 6 9.6887 -2.2528 2.5512 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8745 -0.6801 -0.8912 25 1 3.4097 -3.2983 0.2633 26 1 5.4566 -0.5047 1.4760 27 1 8.3386 -4.6566 0.7455 28 1 9.3726 -3.4594 -0.0878 29 1 10.8308 -3.9134 1.7029 30 1 9.4926 -4.4178 2.7881 31 1 10.4594 -1.6215 2.1089 32 1 9.7547 -2.2313 3.6389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487354408.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:08 Heat of formation + Delta-G solvation = -29.087526 kcal Electronic energy + Delta-G solvation = -18947.713016 eV Core-core repulsion = 15842.671388 eV Total energy + Delta-G solvation = -3105.041628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.66042 -38.47531 -37.54194 -37.13383 -36.64964 -34.29632 -33.11385 -30.02444 -29.41835 -28.42531 -24.16392 -23.34547 -23.13637 -21.53975 -20.52075 -19.37014 -18.75569 -18.00374 -17.81303 -17.27345 -16.54679 -16.35118 -15.52177 -15.29509 -15.16430 -14.92041 -14.53836 -14.49088 -14.29093 -13.83635 -13.46348 -13.32309 -13.30387 -12.82003 -12.75927 -12.58804 -12.46846 -12.06956 -11.90040 -11.64864 -11.30528 -10.94133 -10.90254 -10.42579 -9.95683 -8.33669 -6.40843 -0.80586 0.28550 1.39027 1.40669 1.42639 1.49189 1.70646 1.95680 2.32592 2.44018 2.72142 3.01050 3.37963 3.44779 3.61056 3.85598 4.03419 4.19036 4.31866 4.38403 4.47425 4.71164 4.80966 4.94263 4.96898 4.99984 5.06671 5.36026 5.42594 5.76426 6.08719 6.22217 6.64839 6.65858 7.22537 8.81709 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028180 B = 0.006049 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.369197 B = 4627.426787 C = 5266.527213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.022 3.978 3 Si 0.926 3.074 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.236 1.236 7 C -0.540 4.540 8 H 0.054 0.946 9 C 0.216 3.784 10 N -1.089 6.089 11 S 2.742 3.258 12 O -0.980 6.980 13 O -0.978 6.978 14 C -0.590 4.590 15 C 0.079 3.921 16 N -0.523 5.523 17 C 0.222 3.778 18 N -0.438 5.438 19 C 0.062 3.938 20 C -0.109 4.109 21 C -0.043 4.043 22 H 0.271 0.729 23 H 0.040 0.960 24 H 0.037 0.963 25 H 0.425 0.575 26 H 0.189 0.811 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.149 0.851 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.275 -6.622 5.181 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.178 4.178 3 Si 0.748 3.252 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.159 1.159 7 C -0.580 4.580 8 H 0.072 0.928 9 C 0.091 3.909 10 N -0.852 5.852 11 S 2.827 3.173 12 O -0.969 6.969 13 O -0.968 6.968 14 C -0.786 4.786 15 C -0.077 4.077 16 N -0.242 5.242 17 C -0.043 4.043 18 N -0.119 5.119 19 C -0.057 4.057 20 C -0.146 4.146 21 C -0.082 4.082 22 H 0.080 0.920 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.262 0.738 26 H 0.205 0.795 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.167 0.833 30 H 0.120 0.880 31 H 0.145 0.855 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 23.608 -6.414 4.782 24.927 hybrid contribution -1.071 0.414 -0.065 1.150 sum 22.537 -6.001 4.716 23.794 Atomic orbital electron populations 1.69997 1.08015 1.28561 1.50971 1.25709 0.95586 1.02882 0.93660 0.86031 0.80340 0.79047 0.79769 1.19057 1.20150 1.15883 1.21271 0.90046 0.94366 1.52277 0.92775 1.19481 0.95429 0.78808 0.97195 1.54995 1.27544 1.16686 1.86019 1.00336 0.72174 0.72079 0.72683 1.93568 1.85607 1.74817 1.42924 1.93512 1.86277 1.29845 1.87163 1.33153 1.02779 1.14695 1.27977 1.22844 0.98470 0.94144 0.92224 1.69932 1.02010 1.25941 1.26306 1.26097 0.98874 0.88485 0.90869 1.46376 1.11071 1.25029 1.29386 1.23336 0.89088 0.89993 1.03292 1.22901 1.01303 0.95372 0.95047 1.21192 0.85330 0.96953 1.04744 0.91981 0.94214 0.94531 0.73833 0.79472 0.87762 0.86672 0.83278 0.88048 0.85534 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.23 13.96 21.45 0.30 -55.93 16 2 C 0.02 1.20 5.47 84.66 0.46 1.67 16 3 Si 0.93 41.75 27.47 68.60 1.88 43.63 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 7 C -0.54 -29.51 9.83 25.60 0.25 -29.26 16 8 H 0.05 3.19 7.92 -2.91 -0.02 3.17 16 9 C 0.22 9.76 4.54 85.63 0.39 10.15 16 10 N -1.09 -42.63 5.94 -190.78 -1.13 -43.76 16 11 S 2.74 100.18 5.91 -56.49 -0.33 99.85 16 12 O -0.98 -41.23 17.39 -128.01 -2.23 -43.46 16 13 O -0.98 -36.06 18.02 -128.01 -2.31 -38.36 16 14 C -0.59 -20.25 7.22 83.01 0.60 -19.65 16 15 C 0.08 2.83 11.37 83.52 0.95 3.78 16 16 N -0.52 -17.89 11.26 -187.33 -2.11 -20.00 16 17 C 0.22 5.85 8.58 138.36 1.19 7.04 16 18 N -0.44 -12.10 3.61 -506.09 -1.83 -13.93 16 19 C 0.06 1.00 7.78 86.76 0.67 1.68 16 20 C -0.11 -0.72 7.17 31.59 0.23 -0.50 16 21 C -0.04 -0.50 6.86 30.65 0.21 -0.29 16 22 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 23 H 0.04 1.68 4.75 -2.39 -0.01 1.67 16 24 H 0.04 1.67 7.08 -2.39 -0.02 1.66 16 25 H 0.42 15.55 8.57 -96.74 -0.83 14.72 16 26 H 0.19 6.64 5.39 -2.91 -0.02 6.62 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.15 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -78.71 283.99 -2.52 -81.23 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.28 Total: 16.11 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 4.95 Total: -25.36 kcal Atomic # 7 Polarization: -128.86 SS G_CDS: -4.77 Total: -133.62 kcal Atomic # 8 Polarization: -77.29 SS G_CDS: -4.53 Total: -81.82 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.88 Total: 43.63 kcal Atomic # 16 Polarization: 100.18 SS G_CDS: -0.33 Total: 99.85 kcal Total: -78.71 -2.52 -81.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487354408.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.138 kcal (2) G-P(sol) polarization free energy of solvation -78.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds