Wall clock time and date at job start Mon Mar 30 2020 05:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35750 * 116.99743 * 2 1 4 4 C 1.35868 * 126.13749 * 183.28575 * 3 2 1 5 5 C 1.40346 * 107.79162 * 179.85438 * 4 3 2 6 6 N 1.40135 * 125.93227 * 180.18935 * 5 4 3 7 7 C 1.34771 * 120.00107 * 0.29729 * 6 5 4 8 8 O 1.21291 * 119.99942 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99786 * 180.02562 * 7 6 5 10 10 S 1.81003 * 109.47059 * 179.97438 * 9 7 6 11 11 C 1.76198 * 100.00260 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99875 * 359.97438 * 11 10 9 13 13 C 1.38793 * 120.00355 * 180.02562 * 11 10 9 14 14 N 1.31638 * 119.99985 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00268 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46705 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46766 * 119.99803 * 15 13 11 18 18 H 1.48498 * 109.46959 * 239.99712 * 15 13 11 19 19 N 1.31224 * 108.13333 * 0.41770 * 5 4 3 20 20 N 1.35169 * 126.13941 * 3.60082 * 3 2 1 21 21 C 1.46505 * 125.97387 * 359.97438 * 20 3 2 22 22 H 1.08999 * 109.47136 * 67.01328 * 1 2 3 23 23 H 1.09003 * 109.46528 * 187.01421 * 1 2 3 24 24 H 1.08998 * 109.47067 * 307.00984 * 1 2 3 25 25 H 1.08004 * 126.10334 * 359.96665 * 4 3 2 26 26 H 0.96997 * 119.99666 * 180.28879 * 6 5 4 27 27 H 1.08998 * 109.47221 * 299.99200 * 9 7 6 28 28 H 1.08999 * 109.47275 * 60.00002 * 9 7 6 29 29 H 0.96989 * 120.00134 * 180.02562 * 14 13 11 30 30 H 1.08993 * 109.47323 * 82.71993 * 21 20 3 31 31 H 1.08995 * 109.47089 * 202.72660 * 21 20 3 32 32 H 1.09002 * 109.46644 * 322.72420 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 3.3851 1.4262 -0.0629 5 6 3.5967 2.8135 -0.0410 6 7 4.8407 3.4565 -0.0927 7 6 5.9722 2.7293 -0.1774 8 8 5.9138 1.5181 -0.2083 9 6 7.3100 3.4208 -0.2325 10 16 8.6254 2.1823 -0.3416 11 6 10.0359 3.2372 -0.3895 12 1 9.9099 4.3092 -0.3518 13 6 11.3087 2.6907 -0.4767 14 7 11.4622 1.3841 -0.5231 15 14 12.8040 3.8091 -0.5283 16 1 12.3646 5.2261 -0.4632 17 1 13.6857 3.5102 0.6286 18 1 13.5500 3.5801 -1.7916 19 7 2.4275 3.4037 0.0414 20 7 1.4364 2.4144 0.0686 21 6 -0.0078 2.6452 0.1556 22 1 -0.3633 0.4013 -0.9460 23 1 -0.3632 -1.0200 0.1255 24 1 -0.3633 0.6186 0.8206 25 1 4.1505 0.6665 -0.1213 26 1 4.8874 4.4250 -0.0677 27 1 7.3479 4.0695 -1.1075 28 1 7.4477 4.0181 0.6689 29 1 12.3516 1.0022 -0.5837 30 1 -0.3300 2.5446 1.1919 31 1 -0.2373 3.6494 -0.2005 32 1 -0.5304 1.9130 -0.4600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547494393.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:07 Heat of formation + Delta-G solvation = 34.981545 kcal Electronic energy + Delta-G solvation = -17768.102647 eV Core-core repulsion = 14665.839262 eV Total energy + Delta-G solvation = -3102.263385 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.66219 -39.47930 -38.19408 -34.73495 -32.82083 -32.43255 -30.06273 -29.28695 -27.54100 -25.98026 -25.46020 -22.14395 -21.40522 -19.95865 -18.33333 -17.68332 -16.83714 -16.52604 -16.10315 -15.28832 -15.25297 -14.89693 -14.80443 -14.56693 -14.11578 -13.85479 -13.44602 -13.34185 -12.94642 -12.60706 -12.33064 -11.65312 -11.61553 -11.06649 -11.02320 -10.77167 -10.62178 -10.36588 -9.83130 -9.44954 -9.07657 -8.36786 -8.26488 -8.22729 -6.51653 -6.22296 -3.93321 1.75152 2.03060 2.57713 2.69545 3.03720 3.22470 3.28550 3.32908 3.34955 3.59737 4.19133 4.25826 4.48078 4.66813 4.76316 4.89363 4.96090 5.12313 5.13296 5.31988 5.37969 5.54348 5.77114 5.82521 6.05035 6.08444 6.36908 6.92969 7.18310 7.33262 7.60079 7.88884 8.35107 8.41615 9.23360 10.85163 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.057879 B = 0.003307 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.655132 B = 8464.122272 C = 8921.785746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.288 6.288 3 C 0.278 3.722 4 C -0.281 4.281 5 C 0.335 3.665 6 N -0.640 5.640 7 C 0.539 3.461 8 O -0.486 6.486 9 C -0.151 4.151 10 S -0.054 6.054 11 C -0.536 4.536 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.920 3.080 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.326 5.326 20 N -0.403 5.403 21 C 0.086 3.914 22 H 0.061 0.939 23 H 0.107 0.893 24 H 0.063 0.937 25 H 0.182 0.818 26 H 0.415 0.585 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.268 0.732 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.117 2.819 1.187 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.194 6.194 3 C 0.111 3.889 4 C -0.312 4.312 5 C 0.079 3.921 6 N -0.291 5.291 7 C 0.326 3.674 8 O -0.356 6.356 9 C -0.301 4.301 10 S 0.172 5.828 11 C -0.684 4.684 12 H 0.093 0.907 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.161 5.161 20 N -0.200 5.200 21 C -0.055 4.055 22 H 0.079 0.921 23 H 0.125 0.875 24 H 0.081 0.919 25 H 0.200 0.800 26 H 0.251 0.749 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.673 1.413 1.188 23.745 hybrid contribution 1.021 1.990 0.003 2.237 sum -22.652 3.403 1.191 22.937 Atomic orbital electron populations 1.23619 0.78479 1.05078 1.01259 1.86316 1.21172 1.22025 1.89869 1.19601 0.91080 0.78798 0.99470 1.20901 0.92342 0.96058 1.21856 1.18794 0.86058 0.90698 0.96537 1.42944 1.01742 1.10772 1.73643 1.20549 0.84355 0.87710 0.74815 1.90650 1.86043 1.13709 1.45169 1.23528 0.95419 1.05535 1.05637 1.85441 0.94230 1.06748 1.96336 1.22904 0.92121 0.94643 1.58732 0.90714 1.24996 0.98604 0.95491 0.94496 1.70023 1.23481 1.10045 1.46672 0.86100 0.81285 0.80119 0.77895 1.19582 1.20572 1.20579 1.77436 0.94118 1.10006 1.34524 1.48353 1.06213 1.02567 1.62872 1.22356 0.75245 1.05060 1.02815 0.92094 0.87503 0.91865 0.80045 0.74859 0.88502 0.88498 0.92192 0.90954 0.88839 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.40 101.05 0.95 1.02 16 2 O -0.29 -3.50 10.57 -18.96 -0.20 -3.70 16 3 C 0.28 3.99 7.78 -16.93 -0.13 3.86 16 4 C -0.28 -4.85 9.63 -39.64 -0.38 -5.23 16 5 C 0.34 5.52 8.10 -154.43 -1.25 4.27 16 6 N -0.64 -9.86 5.45 -11.15 -0.06 -9.92 16 7 C 0.54 10.13 7.82 -10.99 -0.09 10.05 16 8 O -0.49 -10.77 12.99 5.55 0.07 -10.69 16 9 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 10 S -0.05 -1.43 20.57 -107.50 -2.21 -3.64 16 11 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 12 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 15 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 N -0.33 -4.92 12.58 31.42 0.40 -4.52 16 20 N -0.40 -5.10 4.02 -68.30 -0.27 -5.38 16 21 C 0.09 0.59 9.59 59.85 0.57 1.17 16 22 H 0.06 0.30 6.61 -51.93 -0.34 -0.05 16 23 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.30 5.79 -51.93 -0.30 0.00 16 25 H 0.18 3.50 5.91 -52.48 -0.31 3.19 16 26 H 0.42 4.97 8.82 -40.82 -0.36 4.61 16 27 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 28 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.07 0.38 7.63 -51.93 -0.40 -0.01 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.40 4.64 -51.93 -0.24 0.16 16 LS Contribution 291.81 15.07 4.40 4.40 Total: -1.00 -35.74 291.81 -5.27 -41.01 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -3.19 Total: 1.72 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 0.09 Total: -0.33 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.79 Total: -44.97 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.13 Total: -14.39 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.64 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -35.74 -5.27 -41.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547494393.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.990 kcal (2) G-P(sol) polarization free energy of solvation -35.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds