Wall clock time and date at job start Mon Mar 30 2020 05:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35750 * 116.99743 * 2 1 4 4 C 1.35868 * 126.13749 * 183.28575 * 3 2 1 5 5 C 1.40346 * 107.79162 * 179.85438 * 4 3 2 6 6 N 1.40135 * 125.93227 * 180.18935 * 5 4 3 7 7 C 1.34771 * 120.00107 * 0.29729 * 6 5 4 8 8 O 1.21291 * 119.99942 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99786 * 180.02562 * 7 6 5 10 10 S 1.81003 * 109.47059 * 179.97438 * 9 7 6 11 11 C 1.76198 * 100.00260 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99875 * 359.97438 * 11 10 9 13 13 C 1.38793 * 120.00355 * 180.02562 * 11 10 9 14 14 N 1.31638 * 119.99985 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00268 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46705 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46766 * 119.99803 * 15 13 11 18 18 H 1.48498 * 109.46959 * 239.99712 * 15 13 11 19 19 N 1.31224 * 108.13333 * 0.41770 * 5 4 3 20 20 N 1.35169 * 126.13941 * 3.60082 * 3 2 1 21 21 C 1.46505 * 125.97387 * 359.97438 * 20 3 2 22 22 H 1.08999 * 109.47136 * 67.01328 * 1 2 3 23 23 H 1.09003 * 109.46528 * 187.01421 * 1 2 3 24 24 H 1.08998 * 109.47067 * 307.00984 * 1 2 3 25 25 H 1.08004 * 126.10334 * 359.96665 * 4 3 2 26 26 H 0.96997 * 119.99666 * 180.28879 * 6 5 4 27 27 H 1.08998 * 109.47221 * 299.99200 * 9 7 6 28 28 H 1.08999 * 109.47275 * 60.00002 * 9 7 6 29 29 H 0.96989 * 120.00134 * 180.02562 * 14 13 11 30 30 H 1.08993 * 109.47323 * 82.71993 * 21 20 3 31 31 H 1.08995 * 109.47089 * 202.72660 * 21 20 3 32 32 H 1.09002 * 109.46644 * 322.72420 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 3.3851 1.4262 -0.0629 5 6 3.5967 2.8135 -0.0410 6 7 4.8407 3.4565 -0.0927 7 6 5.9722 2.7293 -0.1774 8 8 5.9138 1.5181 -0.2083 9 6 7.3100 3.4208 -0.2325 10 16 8.6254 2.1823 -0.3416 11 6 10.0359 3.2372 -0.3895 12 1 9.9099 4.3092 -0.3518 13 6 11.3087 2.6907 -0.4767 14 7 11.4622 1.3841 -0.5231 15 14 12.8040 3.8091 -0.5283 16 1 12.3646 5.2261 -0.4632 17 1 13.6857 3.5102 0.6286 18 1 13.5500 3.5801 -1.7916 19 7 2.4275 3.4037 0.0414 20 7 1.4364 2.4144 0.0686 21 6 -0.0078 2.6452 0.1556 22 1 -0.3633 0.4013 -0.9460 23 1 -0.3632 -1.0200 0.1255 24 1 -0.3633 0.6186 0.8206 25 1 4.1505 0.6665 -0.1213 26 1 4.8874 4.4250 -0.0677 27 1 7.3479 4.0695 -1.1075 28 1 7.4477 4.0181 0.6689 29 1 12.3516 1.0022 -0.5837 30 1 -0.3300 2.5446 1.1919 31 1 -0.2373 3.6494 -0.2005 32 1 -0.5304 1.9130 -0.4600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547494393.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:06 Heat of formation + Delta-G solvation = 7.389344 kcal Electronic energy + Delta-G solvation = -17769.299134 eV Core-core repulsion = 14665.839262 eV Total energy + Delta-G solvation = -3103.459872 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.74996 -40.83412 -39.21768 -36.02279 -34.55667 -33.81431 -31.26115 -30.60965 -28.39003 -27.65150 -26.70308 -23.41786 -22.47030 -21.30059 -19.88018 -19.13380 -17.94705 -17.69653 -17.24458 -16.85328 -16.64638 -16.20441 -16.11855 -15.79319 -15.42537 -14.91999 -14.60047 -14.44592 -14.28108 -13.94083 -13.65460 -13.12893 -12.89894 -12.65718 -12.59317 -12.32082 -11.70987 -11.65750 -11.40736 -11.13176 -10.98042 -10.25981 -9.46851 -9.40078 -8.64060 -8.32325 -6.10018 0.60204 0.93935 1.24604 1.33666 1.44224 1.49457 1.59743 1.86069 2.00576 2.27646 2.28685 3.02380 3.28044 3.56559 3.77376 4.03054 4.13211 4.30010 4.31717 4.37293 4.40625 4.49810 4.52900 4.56084 4.72493 5.03533 5.17192 5.46077 5.63848 6.03612 6.23303 6.38065 6.68383 7.03259 7.09605 8.77061 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.057879 B = 0.003307 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.655132 B = 8464.122272 C = 8921.785746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.305 6.305 3 C 0.294 3.706 4 C -0.328 4.328 5 C 0.318 3.682 6 N -0.621 5.621 7 C 0.544 3.456 8 O -0.526 6.526 9 C -0.124 4.124 10 S -0.143 6.143 11 C -0.544 4.544 12 H 0.086 0.914 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.999 3.001 16 H -0.256 1.256 17 H -0.275 1.275 18 H -0.275 1.275 19 N -0.327 5.327 20 N -0.391 5.391 21 C 0.069 3.931 22 H 0.080 0.920 23 H 0.130 0.870 24 H 0.083 0.917 25 H 0.151 0.849 26 H 0.432 0.568 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.271 0.729 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.161 4.861 1.341 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.211 6.211 3 C 0.124 3.876 4 C -0.359 4.359 5 C 0.063 3.937 6 N -0.272 5.272 7 C 0.330 3.670 8 O -0.399 6.399 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.692 4.692 12 H 0.104 0.896 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.179 1.179 17 H -0.201 1.201 18 H -0.201 1.201 19 N -0.162 5.162 20 N -0.188 5.188 21 C -0.069 4.069 22 H 0.098 0.902 23 H 0.148 0.852 24 H 0.102 0.898 25 H 0.168 0.832 26 H 0.272 0.728 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -25.787 3.500 1.347 26.059 hybrid contribution 1.338 1.307 -0.028 1.871 sum -24.449 4.807 1.318 24.952 Atomic orbital electron populations 1.24108 0.75253 1.07401 1.03146 1.86332 1.24553 1.20862 1.89395 1.19390 0.90613 0.80067 0.97518 1.20724 0.93571 0.96146 1.25444 1.18816 0.86463 0.90551 0.97862 1.42521 1.00868 1.11364 1.72478 1.20343 0.84927 0.87157 0.74565 1.90665 1.86580 1.15453 1.47234 1.23329 0.92966 1.03359 1.07894 1.85632 0.97728 1.11510 1.96686 1.23250 0.92498 0.95075 1.58395 0.89569 1.26119 1.02176 0.97071 0.93820 1.70186 1.24357 1.12303 1.47959 0.84898 0.76660 0.78392 0.77948 1.17922 1.20078 1.20085 1.77356 0.93915 1.10828 1.34132 1.48762 1.07727 1.01438 1.60906 1.22933 0.71931 1.06868 1.05142 0.90180 0.85226 0.89835 0.83165 0.72821 0.86070 0.86082 0.92025 0.88662 0.87655 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 9.40 113.37 1.07 1.01 16 2 O -0.31 -7.05 10.57 -90.75 -0.96 -8.01 16 3 C 0.29 8.24 7.78 83.63 0.65 8.89 16 4 C -0.33 -11.72 9.63 22.23 0.21 -11.50 16 5 C 0.32 10.48 8.10 133.32 1.08 11.56 16 6 N -0.62 -18.88 5.45 -307.58 -1.68 -20.56 16 7 C 0.54 20.74 7.82 87.66 0.69 21.42 16 8 O -0.53 -24.57 12.99 -3.06 -0.04 -24.61 16 9 C -0.12 -4.80 6.16 71.24 0.44 -4.37 16 10 S -0.14 -7.79 20.57 -56.49 -1.16 -8.95 16 11 C -0.54 -30.60 9.50 67.95 0.65 -29.96 16 12 H 0.09 4.47 7.80 -2.91 -0.02 4.45 16 13 C 0.01 0.73 5.49 84.85 0.47 1.19 16 14 N -0.91 -55.73 13.22 21.65 0.29 -55.44 16 15 Si 1.00 43.38 29.55 68.60 2.03 45.40 16 16 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 17 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 19 N -0.33 -9.40 12.58 -54.50 -0.69 -10.09 16 20 N -0.39 -9.06 4.02 -481.29 -1.93 -10.99 16 21 C 0.07 0.69 9.59 127.77 1.22 1.92 16 22 H 0.08 0.46 6.61 -2.39 -0.02 0.45 16 23 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.08 0.46 5.79 -2.39 -0.01 0.45 16 25 H 0.15 6.31 5.91 -2.91 -0.02 6.29 16 26 H 0.43 9.71 8.82 -92.71 -0.82 8.90 16 27 H 0.12 4.11 8.14 -2.40 -0.02 4.09 16 28 H 0.12 4.11 8.14 -2.40 -0.02 4.09 16 29 H 0.27 15.35 8.31 -92.72 -0.77 14.58 16 30 H 0.10 0.59 7.63 -2.39 -0.02 0.58 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.12 0.52 4.64 -2.39 -0.01 0.51 16 Total: -1.00 -81.41 291.81 2.68 -78.73 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.36 Total: 14.35 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 6.47 Total: 0.17 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -4.01 Total: -97.08 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -1.00 Total: -32.62 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -7.79 SS G_CDS: -1.16 Total: -8.95 kcal Total: -81.41 2.68 -78.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547494393.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.119 kcal (2) G-P(sol) polarization free energy of solvation -81.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds