Wall clock time and date at job start Mon Mar 30 2020 04:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 117.00360 * 2 1 4 4 C 1.38855 * 120.00986 * 0.02562 * 3 2 1 5 5 C 1.38222 * 120.12327 * 180.02562 * 4 3 2 6 6 C 1.38099 * 120.14352 * 359.97438 * 5 4 3 7 7 C 1.39100 * 120.02365 * 359.97438 * 6 5 4 8 8 N 1.39287 * 120.06309 * 179.97438 * 7 6 5 9 9 C 1.36859 * 119.99992 * 246.14296 * 8 7 6 10 10 H 1.07993 * 120.00099 * 193.86200 * 9 8 7 11 11 C 1.38790 * 120.00005 * 13.86023 * 9 8 7 12 12 N 1.31595 * 120.00053 * 18.37036 * 11 9 8 13 13 Si 1.86796 * 120.00186 * 198.37496 * 11 9 8 14 14 H 1.48503 * 109.46991 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47246 * 119.99748 * 13 11 9 16 16 H 1.48496 * 109.47407 * 240.00060 * 13 11 9 17 17 S 1.65601 * 120.00152 * 66.14177 * 8 7 6 18 18 C 1.81405 * 104.44862 * 273.45525 * 17 8 7 19 19 O 1.42095 * 104.27691 * 29.52951 * 17 8 7 20 20 O 1.42098 * 104.27627 * 157.38974 * 17 8 7 21 21 C 1.38525 * 120.01202 * 180.02562 * 3 2 1 22 22 H 1.08998 * 109.47047 * 59.99326 * 1 2 3 23 23 H 1.08996 * 109.47500 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46802 * 299.99767 * 1 2 3 25 25 H 1.07998 * 119.94007 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.92920 * 179.97438 * 5 4 3 27 27 H 1.08001 * 119.98943 * 180.02562 * 6 5 4 28 28 H 0.96997 * 120.00181 * 179.97438 * 12 11 9 29 29 H 1.09001 * 109.46912 * 51.62151 * 18 17 8 30 30 H 1.08999 * 109.46718 * 171.62352 * 18 17 8 31 31 H 1.08998 * 109.46923 * 291.62713 * 18 17 8 32 32 H 1.07997 * 120.07228 * 0.25231 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2901 2.3755 0.0005 5 6 1.9152 3.6083 0.0000 6 6 3.2940 3.6866 -0.0005 7 6 4.0572 2.5237 0.0000 8 7 5.4479 2.6018 -0.0011 9 6 6.1572 2.1606 -1.0851 10 1 7.2237 2.0097 -1.0076 11 6 5.5058 1.9068 -2.2841 12 7 4.3121 2.4149 -2.5048 13 14 6.3234 0.8440 -3.5846 14 1 7.6524 0.3975 -3.0951 15 1 5.4738 -0.3424 -3.8602 16 1 6.4938 1.6314 -4.8320 17 16 6.2430 3.2286 1.3093 18 6 6.2773 5.0167 1.0053 19 8 5.3971 2.9261 2.4102 20 8 7.5518 2.6825 1.2192 21 6 3.4294 1.2835 -0.0005 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 0.2116 2.3181 0.0014 26 1 1.3242 4.5122 0.0000 27 1 3.7798 4.6512 -0.0005 28 1 3.8571 2.2379 -3.3429 29 1 5.2692 5.3668 0.7833 30 1 6.6529 5.5287 1.8912 31 1 6.9302 5.2288 0.1587 32 1 4.0188 0.3786 -0.0051 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586185007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:31 Heat of formation + Delta-G solvation = -62.533349 kcal Electronic energy + Delta-G solvation = -19596.592608 eV Core-core repulsion = 16457.807909 eV Total energy + Delta-G solvation = -3138.784699 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.39123 -37.48799 -35.88127 -34.84472 -34.64382 -31.78941 -29.90937 -28.57867 -28.22631 -26.73089 -24.76797 -21.70719 -21.31198 -18.54123 -18.34581 -16.89033 -16.09319 -15.65823 -15.30466 -15.18088 -14.93296 -14.85896 -14.48606 -13.77683 -13.19839 -12.85441 -12.56353 -12.26329 -12.09492 -11.87718 -11.70056 -11.37618 -11.23063 -11.02053 -10.91863 -10.83680 -10.55848 -10.45825 -10.28151 -10.24025 -9.86459 -9.67165 -8.60942 -7.63133 -7.38504 -6.46418 -4.06707 1.39183 2.31285 2.40400 3.09863 3.17630 3.22918 3.67896 3.92637 4.17106 4.64267 4.77441 5.07776 5.25602 5.35852 5.45766 5.61156 5.64380 5.67235 5.79116 5.85165 6.13618 6.23509 6.41089 6.51717 6.71347 6.89900 7.11347 7.22803 7.27557 7.43387 7.68356 8.11937 8.35297 8.53884 9.00828 10.36267 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.010459 C = 0.007342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.353441 B = 2676.408250 C = 3812.650323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.324 6.324 3 C 0.132 3.868 4 C -0.238 4.238 5 C -0.069 4.069 6 C -0.165 4.165 7 C 0.285 3.715 8 N -0.773 5.773 9 C -0.267 4.267 10 H 0.126 0.874 11 C 0.036 3.964 12 N -0.814 5.814 13 Si 0.927 3.073 14 H -0.261 1.261 15 H -0.275 1.275 16 H -0.278 1.278 17 S 2.491 3.509 18 C -0.703 4.703 19 O -0.985 6.985 20 O -0.977 6.977 21 C -0.135 4.135 22 H 0.050 0.950 23 H 0.089 0.911 24 H 0.049 0.951 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.277 0.723 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.965 0.943 0.320 6.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.238 6.238 3 C 0.087 3.913 4 C -0.258 4.258 5 C -0.088 4.088 6 C -0.186 4.186 7 C 0.188 3.812 8 N -0.589 5.589 9 C -0.411 4.411 10 H 0.143 0.857 11 C -0.178 4.178 12 N -0.450 5.450 13 Si 0.752 3.248 14 H -0.185 1.185 15 H -0.200 1.200 16 H -0.204 1.204 17 S 2.593 3.407 18 C -0.845 4.845 19 O -0.975 6.975 20 O -0.966 6.966 21 C -0.158 4.158 22 H 0.068 0.932 23 H 0.108 0.892 24 H 0.068 0.932 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.089 0.911 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.129 0.871 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.555 0.475 1.155 5.694 hybrid contribution -0.142 0.589 -1.261 1.399 sum -5.697 1.064 -0.107 5.797 Atomic orbital electron populations 1.22883 0.79694 1.02757 1.00891 1.86020 1.20323 1.27963 1.89500 1.18627 0.91804 0.83357 0.97480 1.20790 0.98508 0.92515 1.13963 1.20380 0.93832 0.96173 0.98432 1.20911 0.93919 0.96987 1.06759 1.16510 0.82402 0.91857 0.90445 1.51888 1.10106 1.61668 1.35212 1.20028 0.95275 1.37404 0.88350 0.85657 1.25570 0.96445 0.97695 0.98086 1.69967 1.12988 1.36920 1.25113 0.85839 0.79878 0.79627 0.79465 1.18483 1.20034 1.20391 1.12510 0.74241 0.77784 0.76162 1.31020 1.09067 1.35427 1.08939 1.93429 1.67157 1.83629 1.53245 1.93395 1.40075 1.76538 1.86636 1.20058 0.90609 0.97894 1.07209 0.93184 0.89213 0.93195 0.86985 0.87039 0.87224 0.91150 0.87352 0.88731 0.87072 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.32 -6.08 10.49 -19.41 -0.20 -6.29 16 3 C 0.13 2.76 6.68 -39.25 -0.26 2.50 16 4 C -0.24 -4.44 9.04 -39.36 -0.36 -4.80 16 5 C -0.07 -1.31 10.03 -39.64 -0.40 -1.71 16 6 C -0.16 -3.53 9.43 -39.31 -0.37 -3.90 16 7 C 0.28 6.73 2.47 -83.87 -0.21 6.52 16 8 N -0.77 -18.58 2.88 -9.62 -0.03 -18.61 16 9 C -0.27 -6.55 9.32 -15.10 -0.14 -6.69 16 10 H 0.13 3.05 7.02 -52.49 -0.37 2.68 16 11 C 0.04 0.86 4.93 -17.45 -0.09 0.77 16 12 N -0.81 -19.69 10.60 55.49 0.59 -19.10 16 13 Si 0.93 18.79 29.59 -169.99 -5.03 13.76 16 14 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 15 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 16 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 17 S 2.49 56.59 5.86 -107.50 -0.63 55.96 16 18 C -0.70 -13.03 10.99 101.05 1.11 -11.92 16 19 O -0.98 -24.42 17.30 -57.54 -1.00 -25.42 16 20 O -0.98 -24.41 16.66 -57.54 -0.96 -25.37 16 21 C -0.14 -3.17 8.72 -39.19 -0.34 -3.51 16 22 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 23 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 25 H 0.11 1.72 6.29 -52.49 -0.33 1.39 16 26 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.11 2.17 5.91 -52.49 -0.31 1.86 16 28 H 0.28 6.40 8.31 -40.82 -0.34 6.06 16 29 H 0.11 1.91 5.99 -51.92 -0.31 1.60 16 30 H 0.09 1.54 8.14 -51.92 -0.42 1.11 16 31 H 0.11 1.98 8.14 -51.93 -0.42 1.55 16 32 H 0.12 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 285.49 15.07 4.30 4.30 Total: -1.00 -29.98 285.49 -6.38 -36.35 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -3.36 Total: 5.71 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -0.06 Total: -21.31 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.56 Total: -37.71 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -2.16 Total: -57.07 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Atomic # 16 Polarization: 56.59 SS G_CDS: -0.63 Total: 55.96 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.98 -6.38 -36.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586185007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.179 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds