Wall clock time and date at job start Mon Mar 30 2020 04:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 117.00360 * 2 1 4 4 C 1.38855 * 120.00986 * 0.02562 * 3 2 1 5 5 C 1.38222 * 120.12327 * 180.02562 * 4 3 2 6 6 C 1.38099 * 120.14352 * 359.97438 * 5 4 3 7 7 C 1.39100 * 120.02365 * 359.97438 * 6 5 4 8 8 N 1.39287 * 120.06309 * 179.97438 * 7 6 5 9 9 C 1.36859 * 119.99992 * 246.14296 * 8 7 6 10 10 H 1.07993 * 120.00099 * 193.86200 * 9 8 7 11 11 C 1.38790 * 120.00005 * 13.86023 * 9 8 7 12 12 N 1.31595 * 120.00053 * 18.37036 * 11 9 8 13 13 Si 1.86796 * 120.00186 * 198.37496 * 11 9 8 14 14 H 1.48503 * 109.46991 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47246 * 119.99748 * 13 11 9 16 16 H 1.48496 * 109.47407 * 240.00060 * 13 11 9 17 17 S 1.65601 * 120.00152 * 66.14177 * 8 7 6 18 18 C 1.81405 * 104.44862 * 273.45525 * 17 8 7 19 19 O 1.42095 * 104.27691 * 29.52951 * 17 8 7 20 20 O 1.42098 * 104.27627 * 157.38974 * 17 8 7 21 21 C 1.38525 * 120.01202 * 180.02562 * 3 2 1 22 22 H 1.08998 * 109.47047 * 59.99326 * 1 2 3 23 23 H 1.08996 * 109.47500 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46802 * 299.99767 * 1 2 3 25 25 H 1.07998 * 119.94007 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.92920 * 179.97438 * 5 4 3 27 27 H 1.08001 * 119.98943 * 180.02562 * 6 5 4 28 28 H 0.96997 * 120.00181 * 179.97438 * 12 11 9 29 29 H 1.09001 * 109.46912 * 51.62151 * 18 17 8 30 30 H 1.08999 * 109.46718 * 171.62352 * 18 17 8 31 31 H 1.08998 * 109.46923 * 291.62713 * 18 17 8 32 32 H 1.07997 * 120.07228 * 0.25231 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2901 2.3755 0.0005 5 6 1.9152 3.6083 0.0000 6 6 3.2940 3.6866 -0.0005 7 6 4.0572 2.5237 0.0000 8 7 5.4479 2.6018 -0.0011 9 6 6.1572 2.1606 -1.0851 10 1 7.2237 2.0097 -1.0076 11 6 5.5058 1.9068 -2.2841 12 7 4.3121 2.4149 -2.5048 13 14 6.3234 0.8440 -3.5846 14 1 7.6524 0.3975 -3.0951 15 1 5.4738 -0.3424 -3.8602 16 1 6.4938 1.6314 -4.8320 17 16 6.2430 3.2286 1.3093 18 6 6.2773 5.0167 1.0053 19 8 5.3971 2.9261 2.4102 20 8 7.5518 2.6825 1.2192 21 6 3.4294 1.2835 -0.0005 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 0.2116 2.3181 0.0014 26 1 1.3242 4.5122 0.0000 27 1 3.7798 4.6512 -0.0005 28 1 3.8571 2.2379 -3.3429 29 1 5.2692 5.3668 0.7833 30 1 6.6529 5.5287 1.8912 31 1 6.9302 5.2288 0.1587 32 1 4.0188 0.3786 -0.0051 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586185007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:30 Heat of formation + Delta-G solvation = -83.772766 kcal Electronic energy + Delta-G solvation = -19597.513618 eV Core-core repulsion = 16457.807909 eV Total energy + Delta-G solvation = -3139.705709 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.87750 -39.01227 -37.86323 -36.71008 -36.35592 -33.47742 -31.41581 -30.18879 -29.83435 -27.92106 -26.48700 -23.27795 -22.87178 -20.33808 -19.90615 -18.73769 -17.68044 -17.24964 -16.89040 -16.67308 -16.58646 -16.44245 -16.19423 -15.46675 -14.67384 -14.35223 -14.09710 -13.83825 -13.71353 -13.32727 -13.12151 -13.05589 -12.90589 -12.89076 -12.68015 -12.62888 -12.19570 -12.02644 -11.89523 -11.69489 -11.60482 -11.34054 -10.28613 -9.27101 -8.92923 -8.13093 -5.88581 -0.39845 0.75195 0.82634 1.45252 1.49928 1.59796 1.97735 2.42985 2.62168 2.96346 3.10407 3.31578 3.49899 4.12365 4.16806 4.23132 4.31892 4.45358 4.48499 4.55604 4.71009 4.74868 4.81763 5.01799 5.14920 5.30169 5.49645 5.57439 5.73060 5.87543 6.08925 6.58081 6.74527 6.83587 7.28343 8.68896 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.010459 C = 0.007342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.353441 B = 2676.408250 C = 3812.650323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.347 6.347 3 C 0.128 3.872 4 C -0.234 4.234 5 C -0.063 4.063 6 C -0.186 4.186 7 C 0.268 3.732 8 N -0.802 5.802 9 C -0.318 4.318 10 H 0.111 0.889 11 C 0.009 3.991 12 N -0.843 5.843 13 Si 0.974 3.026 14 H -0.265 1.265 15 H -0.282 1.282 16 H -0.270 1.270 17 S 2.533 3.467 18 C -0.676 4.676 19 O -1.005 7.005 20 O -1.002 7.002 21 C -0.174 4.174 22 H 0.061 0.939 23 H 0.116 0.884 24 H 0.066 0.934 25 H 0.151 0.849 26 H 0.154 0.846 27 H 0.123 0.877 28 H 0.272 0.728 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.443 3.014 1.067 8.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.262 6.262 3 C 0.082 3.918 4 C -0.253 4.253 5 C -0.082 4.082 6 C -0.207 4.207 7 C 0.171 3.829 8 N -0.620 5.620 9 C -0.456 4.456 10 H 0.128 0.872 11 C -0.200 4.200 12 N -0.479 5.479 13 Si 0.798 3.202 14 H -0.189 1.189 15 H -0.208 1.208 16 H -0.195 1.195 17 S 2.637 3.363 18 C -0.825 4.825 19 O -0.995 6.995 20 O -0.993 6.993 21 C -0.197 4.197 22 H 0.079 0.921 23 H 0.135 0.865 24 H 0.085 0.915 25 H 0.169 0.831 26 H 0.172 0.828 27 H 0.140 0.860 28 H 0.083 0.917 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.146 0.854 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.056 2.435 1.806 7.680 hybrid contribution 0.292 0.073 -1.167 1.206 sum -6.764 2.507 0.639 7.242 Atomic orbital electron populations 1.23283 0.76635 1.05146 1.02166 1.85994 1.23506 1.27422 1.89234 1.18771 0.91271 0.84939 0.96783 1.21213 1.00337 0.91518 1.12233 1.20902 0.93239 0.97919 0.96116 1.21186 0.95175 0.96669 1.07672 1.16753 0.82309 0.92577 0.91222 1.51319 1.10530 1.65785 1.34343 1.19791 0.94636 1.42250 0.88886 0.87154 1.25974 0.96927 0.98088 0.99051 1.70038 1.14019 1.38640 1.25194 0.85163 0.78705 0.78289 0.78092 1.18899 1.20800 1.19522 1.09243 0.73034 0.79598 0.74457 1.30670 1.11394 1.28789 1.11673 1.93435 1.67669 1.84948 1.53494 1.93398 1.40795 1.78240 1.86828 1.20146 0.92128 0.97317 1.10118 0.92054 0.86530 0.91532 0.83139 0.82850 0.85964 0.91719 0.85361 0.84823 0.85383 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.64 16 2 O -0.35 -12.94 10.49 -92.37 -0.97 -13.91 16 3 C 0.13 5.33 6.68 22.49 0.15 5.48 16 4 C -0.23 -8.17 9.04 22.41 0.20 -7.96 16 5 C -0.06 -2.21 10.03 22.23 0.22 -1.99 16 6 C -0.19 -7.72 9.43 22.44 0.21 -7.51 16 7 C 0.27 12.84 2.47 38.35 0.09 12.93 16 8 N -0.80 -39.37 2.88 -184.34 -0.53 -39.90 16 9 C -0.32 -16.35 9.32 84.04 0.78 -15.57 16 10 H 0.11 5.72 7.02 -2.91 -0.02 5.70 16 11 C 0.01 0.47 4.93 84.86 0.42 0.89 16 12 N -0.84 -42.22 10.60 21.65 0.23 -41.99 16 13 Si 0.97 40.42 29.59 68.60 2.03 42.45 16 14 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 15 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 17 S 2.53 112.65 5.86 -56.49 -0.33 112.32 16 18 C -0.68 -22.18 10.99 113.37 1.25 -20.94 16 19 O -1.01 -48.93 17.30 -127.65 -2.21 -51.14 16 20 O -1.00 -50.01 16.66 -127.65 -2.13 -52.14 16 21 C -0.17 -8.52 8.72 22.52 0.20 -8.32 16 22 H 0.06 1.33 7.66 -2.39 -0.02 1.31 16 23 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.07 1.37 7.66 -2.38 -0.02 1.35 16 25 H 0.15 3.98 6.29 -2.91 -0.02 3.96 16 26 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 27 H 0.12 4.55 5.91 -2.91 -0.02 4.53 16 28 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 29 H 0.13 3.91 5.99 -2.39 -0.01 3.90 16 30 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 31 H 0.13 4.01 8.14 -2.39 -0.02 3.99 16 32 H 0.09 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -67.42 285.49 1.87 -65.55 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 1.14 Total: 20.11 kcal Atomic # 6 Polarization: -46.00 SS G_CDS: 4.64 Total: -41.36 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -0.30 Total: -81.88 kcal Atomic # 8 Polarization: -111.89 SS G_CDS: -5.30 Total: -117.19 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 16 Polarization: 112.65 SS G_CDS: -0.33 Total: 112.32 kcal Total: -67.42 1.87 -65.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586185007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.223 kcal (2) G-P(sol) polarization free energy of solvation -67.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds