Wall clock time and date at job start Mon Mar 30 2020 05:39:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31631 * 1
3 3 Si 1.86795 * 120.00330 * 2 1
4 4 H 1.48495 * 109.47383 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47375 * 300.00381 * 3 2 1
6 6 H 1.48505 * 109.46965 * 60.00065 * 3 2 1
7 7 C 1.38801 * 119.99737 * 180.02562 * 2 1 3
8 8 H 1.08006 * 119.99873 * 180.02562 * 7 2 1
9 9 S 1.76198 * 120.00096 * 359.97438 * 7 2 1
10 10 C 1.81002 * 99.99878 * 180.02562 * 9 7 2
11 11 C 1.50706 * 109.47200 * 179.97438 * 10 9 7
12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9
13 13 N 1.34774 * 120.00020 * 179.97438 * 11 10 9
14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10
15 15 H 1.08993 * 112.89335 * 23.65258 * 14 13 11
16 16 C 1.53959 * 113.66113 * 252.18499 * 14 13 11
17 17 C 1.53954 * 87.29628 * 220.79842 * 16 14 13
18 18 H 1.09005 * 113.74795 * 270.25263 * 17 16 14
19 19 O 1.42899 * 113.66072 * 139.20388 * 17 16 14
20 20 C 1.52915 * 86.78208 * 24.73342 * 17 16 14
21 21 C 1.52908 * 121.13700 * 100.82038 * 20 17 16
22 22 C 1.53954 * 86.78032 * 100.81964 * 21 20 17
23 23 C 1.52909 * 121.13294 * 209.38251 * 20 17 16
24 24 H 0.97001 * 119.99701 * 0.02562 * 1 2 3
25 25 H 1.09001 * 109.46925 * 60.00038 * 10 9 7
26 26 H 1.09000 * 109.47556 * 300.00312 * 10 9 7
27 27 H 0.96994 * 119.99756 * 0.02562 * 13 11 10
28 28 H 1.08997 * 113.57885 * 335.39692 * 16 14 13
29 29 H 1.08993 * 113.57969 * 106.19661 * 16 14 13
30 30 H 0.96698 * 113.99720 * 82.81543 * 19 17 16
31 31 H 1.08999 * 113.66197 * 215.29056 * 21 20 17
32 32 H 1.08999 * 113.66129 * 346.35318 * 21 20 17
33 33 H 1.08999 * 113.57803 * 270.12722 * 22 21 20
34 34 H 1.08997 * 113.57589 * 139.34154 * 22 21 20
35 35 H 1.09000 * 113.66680 * 13.65544 * 23 20 17
36 36 H 1.09007 * 113.66234 * 144.62047 * 23 20 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2504 1.6176 0.0000
4 1 3.7103 1.3463 0.0006
5 1 1.8916 2.3964 -1.2124
6 1 1.8916 2.3964 1.2126
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0001
9 16 1.1292 -2.7280 -0.0005
10 6 2.5158 -3.8914 -0.0005
11 6 1.9873 -5.3028 0.0001
12 8 0.7910 -5.5023 0.0000
13 7 2.8440 -6.3432 -0.0003
14 6 2.3302 -7.7151 -0.0003
15 1 1.3200 -7.7895 -0.4027
16 6 2.5180 -8.4452 1.3421
17 6 2.8969 -9.6946 0.5263
18 1 2.0465 -10.3275 0.2723
19 8 3.9914 -10.4294 1.0777
20 6 3.3035 -8.7349 -0.5926
21 6 4.7708 -8.3794 -0.8349
22 6 4.7349 -9.3927 -1.9934
23 6 3.2161 -9.1508 -2.0614
24 1 -0.4850 0.8401 -0.0004
25 1 3.1244 -3.7314 0.8895
26 1 3.1245 -3.7314 -0.8905
27 1 3.8007 -6.1835 -0.0006
28 1 3.3383 -8.0509 1.9419
29 1 1.5944 -8.5586 1.9097
30 1 3.7397 -11.0378 1.7859
31 1 4.9237 -7.3499 -1.1587
32 1 5.4321 -8.6711 -0.0190
33 1 5.0021 -10.4063 -1.6946
34 1 5.2700 -9.0580 -2.8821
35 1 2.6353 -10.0585 -2.2254
36 1 2.9305 -8.3384 -2.7299
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000598315166.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:39:16
Heat of formation + Delta-G solvation = -46.570583 kcal
Electronic energy + Delta-G solvation = -18447.278138 eV
Core-core repulsion = 15445.018731 eV
Total energy + Delta-G solvation = -3002.259407 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 271.103 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.11872 -38.67727 -36.33406 -34.82704 -32.54756 -32.42140 -29.09506 -26.01390
-25.51870 -24.87432 -24.10134 -21.21938 -20.32543 -18.51143 -17.88327 -17.69151
-16.48007 -16.10871 -15.65061 -15.10152 -14.85442 -14.80266 -14.13997 -13.72806
-13.33976 -13.19395 -12.90608 -12.53421 -12.45467 -12.27332 -12.01524 -11.64979
-11.43545 -11.06908 -11.01653 -10.77783 -10.72875 -10.57044 -10.40862 -9.87278
-9.78013 -9.36513 -9.07398 -8.79241 -8.22948 -6.49652 -6.21677 -3.92018
3.02129 3.07024 3.21779 3.28167 3.32738 3.64182 3.94794 4.18601
4.20650 4.27242 4.46198 4.58440 4.66380 4.69244 5.07067 5.13691
5.17126 5.27590 5.40248 5.45985 5.58577 5.63566 5.67137 5.74032
5.78699 5.86450 5.89385 6.08434 6.14213 6.17764 6.25401 6.67969
7.36964 7.60163 7.73645 8.35675 8.62045 9.23891 10.85843
Molecular weight = 271.10amu
Principal moments of inertia in cm(-1)
A = 0.038894 B = 0.003575 C = 0.003473
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 719.728224 B = 7830.619969 C = 8059.971661
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.868 5.868
2 C 0.073 3.927
3 Si 0.919 3.081
4 H -0.272 1.272
5 H -0.280 1.280
6 H -0.280 1.280
7 C -0.535 4.535
8 H 0.073 0.927
9 S -0.060 6.060
10 C -0.154 4.154
11 C 0.533 3.467
12 O -0.518 6.518
13 N -0.723 5.723
14 C 0.141 3.859
15 H 0.118 0.882
16 C -0.180 4.180
17 C 0.104 3.896
18 H 0.086 0.914
19 O -0.554 6.554
20 C -0.104 4.104
21 C -0.111 4.111
22 C -0.134 4.134
23 C -0.127 4.127
24 H 0.268 0.732
25 H 0.089 0.911
26 H 0.089 0.911
27 H 0.398 0.602
28 H 0.092 0.908
29 H 0.075 0.925
30 H 0.377 0.623
31 H 0.083 0.917
32 H 0.078 0.922
33 H 0.081 0.919
34 H 0.065 0.935
35 H 0.068 0.932
36 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.484 -20.320 -0.276 22.426
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.503 5.503
2 C -0.136 4.136
3 Si 0.745 3.255
4 H -0.196 1.196
5 H -0.206 1.206
6 H -0.206 1.206
7 C -0.683 4.683
8 H 0.091 0.909
9 S 0.166 5.834
10 C -0.305 4.305
11 C 0.320 3.680
12 O -0.392 6.392
13 N -0.377 5.377
14 C 0.035 3.965
15 H 0.136 0.864
16 C -0.219 4.219
17 C 0.044 3.956
18 H 0.104 0.896
19 O -0.359 6.359
20 C -0.105 4.105
21 C -0.149 4.149
22 C -0.171 4.171
23 C -0.164 4.164
24 H 0.078 0.922
25 H 0.108 0.892
26 H 0.108 0.892
27 H 0.233 0.767
28 H 0.111 0.889
29 H 0.094 0.906
30 H 0.224 0.776
31 H 0.101 0.899
32 H 0.096 0.904
33 H 0.100 0.900
34 H 0.084 0.916
35 H 0.087 0.913
36 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 7.646 -20.179 -0.725 21.591
hybrid contribution 2.034 1.062 0.476 2.344
sum 9.680 -19.117 -0.249 21.430
Atomic orbital electron populations
1.70032 1.05955 1.27332 1.46981 1.24993 0.95028 0.99039 0.94535
0.86112 0.79590 0.81864 0.77898 1.19614 1.20559 1.20569 1.22917
0.94955 0.91660 1.58811 0.90879 1.85387 1.04944 0.96328 1.96709
1.23540 1.06577 0.95423 1.04921 1.20352 0.86583 0.86329 0.74784
1.90690 1.15377 1.85586 1.47572 1.45880 1.09830 1.04829 1.77119
1.21893 0.98590 0.80349 0.95677 0.86442 1.24137 1.02675 0.96969
0.98103 1.22798 0.88976 0.90369 0.93420 0.89591 1.86494 1.34416
1.59087 1.55916 1.23079 0.97396 0.95480 0.94505 1.22431 0.94094
0.99316 0.99026 1.22768 0.96231 0.99757 0.98370 1.22785 0.97000
1.01571 0.95070 0.92247 0.89237 0.89229 0.76658 0.88943 0.90645
0.77555 0.89888 0.90350 0.90023 0.91588 0.91331 0.89440
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16
2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16
3 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16
4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16
5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16
6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
7 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16
8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16
9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16
10 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16
11 C 0.53 10.02 7.85 -10.98 -0.09 9.94 16
12 O -0.52 -11.76 15.46 5.56 0.09 -11.68 16
13 N -0.72 -9.96 5.25 -53.37 -0.28 -10.24 16
14 C 0.14 1.72 4.12 -67.48 -0.28 1.44 16
15 H 0.12 1.62 7.46 -51.93 -0.39 1.24 16
16 C -0.18 -1.87 7.72 -25.74 -0.20 -2.07 16
17 C 0.10 0.91 5.09 -26.28 -0.13 0.78 16
18 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
19 O -0.55 -4.61 12.86 -35.23 -0.45 -5.07 16
20 C -0.10 -1.02 1.07 -154.71 -0.17 -1.18 16
21 C -0.11 -1.04 6.86 -26.28 -0.18 -1.22 16
22 C -0.13 -1.17 8.08 -25.75 -0.21 -1.38 16
23 C -0.13 -1.18 7.84 -26.28 -0.21 -1.38 16
24 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16
25 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16
26 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16
27 H 0.40 4.54 7.03 -40.82 -0.29 4.26 16
28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16
29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
30 H 0.38 1.60 9.12 45.56 0.42 2.02 16
31 H 0.08 0.76 7.03 -51.93 -0.36 0.39 16
32 H 0.08 0.77 7.65 -51.93 -0.40 0.38 16
33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
36 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16
LS Contribution 315.70 15.07 4.76 4.76
Total: -1.00 -34.46 315.70 -7.80 -42.26
By element:
Atomic # 1 Polarization: 8.26 SS G_CDS: -4.37 Total: 3.89 kcal
Atomic # 6 Polarization: -9.98 SS G_CDS: -1.04 Total: -11.02 kcal
Atomic # 7 Polarization: -36.19 SS G_CDS: 0.45 Total: -35.74 kcal
Atomic # 8 Polarization: -16.37 SS G_CDS: -0.37 Total: -16.74 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal
Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal
Total LS contribution 4.76 Total: 4.76 kcal
Total: -34.46 -7.80 -42.26 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598315166.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.312 kcal
(2) G-P(sol) polarization free energy of solvation -34.460 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.772 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.571 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds