Wall clock time and date at job start Mon Mar 30 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48495 * 109.47383 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47375 * 300.00381 * 3 2 1 6 6 H 1.48505 * 109.46965 * 60.00065 * 3 2 1 7 7 C 1.38801 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99873 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 H 1.08993 * 112.89335 * 23.65258 * 14 13 11 16 16 C 1.53959 * 113.66113 * 252.18499 * 14 13 11 17 17 C 1.53954 * 87.29628 * 220.79842 * 16 14 13 18 18 H 1.09005 * 113.74795 * 270.25263 * 17 16 14 19 19 O 1.42899 * 113.66072 * 139.20388 * 17 16 14 20 20 C 1.52915 * 86.78208 * 24.73342 * 17 16 14 21 21 C 1.52908 * 121.13700 * 100.82038 * 20 17 16 22 22 C 1.53954 * 86.78032 * 100.81964 * 21 20 17 23 23 C 1.52909 * 121.13294 * 209.38251 * 20 17 16 24 24 H 0.97001 * 119.99701 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46925 * 60.00038 * 10 9 7 26 26 H 1.09000 * 109.47556 * 300.00312 * 10 9 7 27 27 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 28 28 H 1.08997 * 113.57885 * 335.39692 * 16 14 13 29 29 H 1.08993 * 113.57969 * 106.19661 * 16 14 13 30 30 H 0.96698 * 113.99720 * 82.81543 * 19 17 16 31 31 H 1.08999 * 113.66197 * 215.29056 * 21 20 17 32 32 H 1.08999 * 113.66129 * 346.35318 * 21 20 17 33 33 H 1.08999 * 113.57803 * 270.12722 * 22 21 20 34 34 H 1.08997 * 113.57589 * 139.34154 * 22 21 20 35 35 H 1.09000 * 113.66680 * 13.65544 * 23 20 17 36 36 H 1.09007 * 113.66234 * 144.62047 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 2.3302 -7.7151 -0.0003 15 1 1.3200 -7.7895 -0.4027 16 6 2.5180 -8.4452 1.3421 17 6 2.8969 -9.6946 0.5263 18 1 2.0465 -10.3275 0.2723 19 8 3.9914 -10.4294 1.0777 20 6 3.3035 -8.7349 -0.5926 21 6 4.7708 -8.3794 -0.8349 22 6 4.7349 -9.3927 -1.9934 23 6 3.2161 -9.1508 -2.0614 24 1 -0.4850 0.8401 -0.0004 25 1 3.1244 -3.7314 0.8895 26 1 3.1245 -3.7314 -0.8905 27 1 3.8007 -6.1835 -0.0006 28 1 3.3383 -8.0509 1.9419 29 1 1.5944 -8.5586 1.9097 30 1 3.7397 -11.0378 1.7859 31 1 4.9237 -7.3499 -1.1587 32 1 5.4321 -8.6711 -0.0190 33 1 5.0021 -10.4063 -1.6946 34 1 5.2700 -9.0580 -2.8821 35 1 2.6353 -10.0585 -2.2254 36 1 2.9305 -8.3384 -2.7299 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598315166.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:16 Heat of formation + Delta-G solvation = -46.570583 kcal Electronic energy + Delta-G solvation = -18447.278138 eV Core-core repulsion = 15445.018731 eV Total energy + Delta-G solvation = -3002.259407 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.11872 -38.67727 -36.33406 -34.82704 -32.54756 -32.42140 -29.09506 -26.01390 -25.51870 -24.87432 -24.10134 -21.21938 -20.32543 -18.51143 -17.88327 -17.69151 -16.48007 -16.10871 -15.65061 -15.10152 -14.85442 -14.80266 -14.13997 -13.72806 -13.33976 -13.19395 -12.90608 -12.53421 -12.45467 -12.27332 -12.01524 -11.64979 -11.43545 -11.06908 -11.01653 -10.77783 -10.72875 -10.57044 -10.40862 -9.87278 -9.78013 -9.36513 -9.07398 -8.79241 -8.22948 -6.49652 -6.21677 -3.92018 3.02129 3.07024 3.21779 3.28167 3.32738 3.64182 3.94794 4.18601 4.20650 4.27242 4.46198 4.58440 4.66380 4.69244 5.07067 5.13691 5.17126 5.27590 5.40248 5.45985 5.58577 5.63566 5.67137 5.74032 5.78699 5.86450 5.89385 6.08434 6.14213 6.17764 6.25401 6.67969 7.36964 7.60163 7.73645 8.35675 8.62045 9.23891 10.85843 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.038894 B = 0.003575 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.728224 B = 7830.619969 C = 8059.971661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.723 5.723 14 C 0.141 3.859 15 H 0.118 0.882 16 C -0.180 4.180 17 C 0.104 3.896 18 H 0.086 0.914 19 O -0.554 6.554 20 C -0.104 4.104 21 C -0.111 4.111 22 C -0.134 4.134 23 C -0.127 4.127 24 H 0.268 0.732 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.398 0.602 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.377 0.623 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.484 -20.320 -0.276 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.392 6.392 13 N -0.377 5.377 14 C 0.035 3.965 15 H 0.136 0.864 16 C -0.219 4.219 17 C 0.044 3.956 18 H 0.104 0.896 19 O -0.359 6.359 20 C -0.105 4.105 21 C -0.149 4.149 22 C -0.171 4.171 23 C -0.164 4.164 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.233 0.767 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.224 0.776 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.646 -20.179 -0.725 21.591 hybrid contribution 2.034 1.062 0.476 2.344 sum 9.680 -19.117 -0.249 21.430 Atomic orbital electron populations 1.70032 1.05955 1.27332 1.46981 1.24993 0.95028 0.99039 0.94535 0.86112 0.79590 0.81864 0.77898 1.19614 1.20559 1.20569 1.22917 0.94955 0.91660 1.58811 0.90879 1.85387 1.04944 0.96328 1.96709 1.23540 1.06577 0.95423 1.04921 1.20352 0.86583 0.86329 0.74784 1.90690 1.15377 1.85586 1.47572 1.45880 1.09830 1.04829 1.77119 1.21893 0.98590 0.80349 0.95677 0.86442 1.24137 1.02675 0.96969 0.98103 1.22798 0.88976 0.90369 0.93420 0.89591 1.86494 1.34416 1.59087 1.55916 1.23079 0.97396 0.95480 0.94505 1.22431 0.94094 0.99316 0.99026 1.22768 0.96231 0.99757 0.98370 1.22785 0.97000 1.01571 0.95070 0.92247 0.89237 0.89229 0.76658 0.88943 0.90645 0.77555 0.89888 0.90350 0.90023 0.91588 0.91331 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 11 C 0.53 10.02 7.85 -10.98 -0.09 9.94 16 12 O -0.52 -11.76 15.46 5.56 0.09 -11.68 16 13 N -0.72 -9.96 5.25 -53.37 -0.28 -10.24 16 14 C 0.14 1.72 4.12 -67.48 -0.28 1.44 16 15 H 0.12 1.62 7.46 -51.93 -0.39 1.24 16 16 C -0.18 -1.87 7.72 -25.74 -0.20 -2.07 16 17 C 0.10 0.91 5.09 -26.28 -0.13 0.78 16 18 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 19 O -0.55 -4.61 12.86 -35.23 -0.45 -5.07 16 20 C -0.10 -1.02 1.07 -154.71 -0.17 -1.18 16 21 C -0.11 -1.04 6.86 -26.28 -0.18 -1.22 16 22 C -0.13 -1.17 8.08 -25.75 -0.21 -1.38 16 23 C -0.13 -1.18 7.84 -26.28 -0.21 -1.38 16 24 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 25 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 26 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 27 H 0.40 4.54 7.03 -40.82 -0.29 4.26 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.38 1.60 9.12 45.56 0.42 2.02 16 31 H 0.08 0.76 7.03 -51.93 -0.36 0.39 16 32 H 0.08 0.77 7.65 -51.93 -0.40 0.38 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -34.46 315.70 -7.80 -42.26 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -4.37 Total: 3.89 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -1.04 Total: -11.02 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.45 Total: -35.74 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.37 Total: -16.74 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.46 -7.80 -42.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598315166.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.312 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds