Wall clock time and date at job start Mon Mar 30 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48495 * 109.47383 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47375 * 300.00381 * 3 2 1 6 6 H 1.48505 * 109.46965 * 60.00065 * 3 2 1 7 7 C 1.38801 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99873 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 H 1.08993 * 112.89335 * 23.65258 * 14 13 11 16 16 C 1.53959 * 113.66113 * 252.18499 * 14 13 11 17 17 C 1.53954 * 87.29628 * 220.79842 * 16 14 13 18 18 H 1.09005 * 113.74795 * 270.25263 * 17 16 14 19 19 O 1.42899 * 113.66072 * 139.20388 * 17 16 14 20 20 C 1.52915 * 86.78208 * 24.73342 * 17 16 14 21 21 C 1.52908 * 121.13700 * 100.82038 * 20 17 16 22 22 C 1.53954 * 86.78032 * 100.81964 * 21 20 17 23 23 C 1.52909 * 121.13294 * 209.38251 * 20 17 16 24 24 H 0.97001 * 119.99701 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46925 * 60.00038 * 10 9 7 26 26 H 1.09000 * 109.47556 * 300.00312 * 10 9 7 27 27 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 28 28 H 1.08997 * 113.57885 * 335.39692 * 16 14 13 29 29 H 1.08993 * 113.57969 * 106.19661 * 16 14 13 30 30 H 0.96698 * 113.99720 * 82.81543 * 19 17 16 31 31 H 1.08999 * 113.66197 * 215.29056 * 21 20 17 32 32 H 1.08999 * 113.66129 * 346.35318 * 21 20 17 33 33 H 1.08999 * 113.57803 * 270.12722 * 22 21 20 34 34 H 1.08997 * 113.57589 * 139.34154 * 22 21 20 35 35 H 1.09000 * 113.66680 * 13.65544 * 23 20 17 36 36 H 1.09007 * 113.66234 * 144.62047 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 2.3302 -7.7151 -0.0003 15 1 1.3200 -7.7895 -0.4027 16 6 2.5180 -8.4452 1.3421 17 6 2.8969 -9.6946 0.5263 18 1 2.0465 -10.3275 0.2723 19 8 3.9914 -10.4294 1.0777 20 6 3.3035 -8.7349 -0.5926 21 6 4.7708 -8.3794 -0.8349 22 6 4.7349 -9.3927 -1.9934 23 6 3.2161 -9.1508 -2.0614 24 1 -0.4850 0.8401 -0.0004 25 1 3.1244 -3.7314 0.8895 26 1 3.1245 -3.7314 -0.8905 27 1 3.8007 -6.1835 -0.0006 28 1 3.3383 -8.0509 1.9419 29 1 1.5944 -8.5586 1.9097 30 1 3.7397 -11.0378 1.7859 31 1 4.9237 -7.3499 -1.1587 32 1 5.4321 -8.6711 -0.0190 33 1 5.0021 -10.4063 -1.6946 34 1 5.2700 -9.0580 -2.8821 35 1 2.6353 -10.0585 -2.2254 36 1 2.9305 -8.3384 -2.7299 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598315166.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:15 Heat of formation + Delta-G solvation = -72.396970 kcal Electronic energy + Delta-G solvation = -18448.398054 eV Core-core repulsion = 15445.018731 eV Total energy + Delta-G solvation = -3003.379323 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.00543 -40.08928 -37.00352 -35.87035 -34.59173 -33.69683 -30.64595 -27.69145 -26.75561 -25.67973 -25.05510 -22.03570 -21.72449 -19.95077 -19.14503 -18.57857 -17.91346 -17.12346 -16.88679 -16.57389 -16.23830 -16.15244 -15.81355 -14.85902 -14.56749 -14.45861 -14.13695 -13.75748 -13.46396 -13.24586 -13.16248 -13.06553 -12.91716 -12.61316 -12.40077 -12.29738 -11.73272 -11.55336 -11.34840 -11.19407 -11.16247 -10.91073 -10.57094 -10.28497 -9.97193 -8.67447 -8.35437 -6.13547 1.26314 1.41299 1.46553 1.57303 1.58109 2.23176 2.27617 2.98906 3.19278 3.30970 3.38024 3.46439 3.70390 3.80515 3.86629 3.92085 4.01105 4.28430 4.41215 4.48256 4.50279 4.55947 4.71068 4.83637 4.89096 4.96965 5.04823 5.10119 5.20288 5.37383 5.41599 5.51657 5.56750 6.19482 6.48088 6.93091 7.06068 7.21678 8.74103 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.038894 B = 0.003575 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.728224 B = 7830.619969 C = 8059.971661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.131 4.131 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.699 5.699 14 C 0.126 3.874 15 H 0.098 0.902 16 C -0.176 4.176 17 C 0.118 3.882 18 H 0.103 0.897 19 O -0.563 6.563 20 C -0.100 4.100 21 C -0.112 4.112 22 C -0.127 4.127 23 C -0.129 4.129 24 H 0.271 0.729 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.413 0.587 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.396 0.604 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.871 -21.132 -0.249 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.322 3.678 12 O -0.442 6.442 13 N -0.352 5.352 14 C 0.020 3.980 15 H 0.116 0.884 16 C -0.215 4.215 17 C 0.059 3.941 18 H 0.121 0.879 19 O -0.370 6.370 20 C -0.101 4.101 21 C -0.149 4.149 22 C -0.164 4.164 23 C -0.166 4.166 24 H 0.080 0.920 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.250 0.750 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.247 0.753 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.084 -21.046 -0.685 23.347 hybrid contribution 1.337 1.169 0.483 1.840 sum 11.421 -19.878 -0.202 22.926 Atomic orbital electron populations 1.70189 1.07975 1.28569 1.48032 1.26126 0.95965 1.03305 0.93687 0.84897 0.78588 0.76296 0.78110 1.18067 1.19873 1.19899 1.23247 0.95358 0.92034 1.58863 0.89956 1.85555 1.10434 0.99165 1.97043 1.23384 1.03636 0.94452 1.06712 1.20092 0.86294 0.86655 0.74776 1.90678 1.17307 1.86048 1.50206 1.45649 1.09972 1.04606 1.74934 1.22095 0.98541 0.79535 0.97796 0.88367 1.24107 1.02595 0.97663 0.97155 1.22648 0.89455 0.89991 0.92054 0.87932 1.86449 1.34325 1.59467 1.56798 1.23102 0.97035 0.94750 0.95260 1.22461 0.93471 0.99701 0.99314 1.22726 0.95636 0.99711 0.98319 1.22795 0.97774 1.01697 0.94346 0.91969 0.87349 0.87272 0.74957 0.89092 0.90831 0.75334 0.89722 0.90492 0.89670 0.90876 0.90368 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.14 13.22 21.65 0.29 -55.85 16 2 C 0.01 0.79 5.49 84.86 0.47 1.26 16 3 Si 1.00 43.72 29.55 68.60 2.03 45.74 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.55 -31.44 9.50 67.95 0.65 -30.80 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 10 C -0.13 -5.25 6.16 71.24 0.44 -4.81 16 11 C 0.54 20.09 7.85 87.66 0.69 20.78 16 12 O -0.56 -26.33 15.46 -3.02 -0.05 -26.38 16 13 N -0.70 -18.50 5.25 -441.14 -2.32 -20.82 16 14 C 0.13 2.95 4.12 45.29 0.19 3.13 16 15 H 0.10 2.74 7.46 -2.39 -0.02 2.72 16 16 C -0.18 -3.41 7.72 31.23 0.24 -3.17 16 17 C 0.12 1.80 5.09 30.89 0.16 1.95 16 18 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 19 O -0.56 -7.71 12.86 -148.98 -1.92 -9.63 16 20 C -0.10 -1.78 1.07 -52.31 -0.06 -1.84 16 21 C -0.11 -1.85 6.86 30.89 0.21 -1.63 16 22 C -0.13 -1.90 8.08 31.23 0.25 -1.65 16 23 C -0.13 -2.15 7.84 30.88 0.24 -1.91 16 24 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 25 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 26 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 27 H 0.41 8.60 7.03 -92.71 -0.65 7.95 16 28 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 30 H 0.40 2.14 9.12 -74.06 -0.68 1.47 16 31 H 0.08 1.35 7.03 -2.39 -0.02 1.33 16 32 H 0.08 1.32 7.65 -2.39 -0.02 1.30 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -75.88 315.70 0.12 -75.76 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -0.23 Total: 19.35 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 3.47 Total: -18.68 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -2.03 Total: -76.67 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -1.96 Total: -36.01 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -75.88 0.12 -75.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598315166.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.363 kcal (2) G-P(sol) polarization free energy of solvation -75.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds