Wall clock time and date at job start Mon Mar 30 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99845 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99838 * 3 2 1 7 7 C 1.38801 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99941 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99933 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99750 * 180.02562 * 13 11 10 15 15 H 1.08998 * 112.88977 * 25.32765 * 14 13 11 16 16 C 1.53956 * 113.66151 * 253.98423 * 14 13 11 17 17 C 1.53949 * 87.29516 * 270.26264 * 16 14 13 18 18 H 1.08994 * 113.66631 * 89.82984 * 17 16 14 19 19 O 1.42897 * 113.66300 * 220.79363 * 17 16 14 20 20 C 1.52914 * 113.66461 * 156.67765 * 14 13 11 21 21 C 1.52908 * 121.13887 * 323.84809 * 20 14 13 22 22 C 1.53956 * 86.78118 * 209.37729 * 21 20 14 23 23 C 1.52906 * 121.13949 * 215.28296 * 20 14 13 24 24 H 0.97001 * 120.00200 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47176 * 299.99944 * 10 9 7 26 26 H 1.08998 * 109.47231 * 59.99799 * 10 9 7 27 27 H 0.96997 * 120.00437 * 359.97438 * 13 11 10 28 28 H 1.09006 * 113.57915 * 24.86689 * 16 14 13 29 29 H 1.09008 * 113.57994 * 155.65772 * 16 14 13 30 30 H 0.96705 * 114.00198 * 280.50038 * 19 17 16 31 31 H 1.08997 * 113.66367 * 323.85195 * 21 20 14 32 32 H 1.09005 * 113.66173 * 94.90617 * 21 20 14 33 33 H 1.09006 * 113.57780 * 270.13246 * 22 21 20 34 34 H 1.09002 * 113.57806 * 139.34207 * 22 21 20 35 35 H 1.08996 * 113.66824 * 265.10152 * 23 20 14 36 36 H 1.09006 * 113.65943 * 36.06262 * 23 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3430 0.0018 14 6 2.3303 -7.7150 0.0019 15 1 1.3318 -7.7939 -0.4282 16 6 2.4773 -8.4298 1.3575 17 6 3.8578 -8.9087 0.8727 18 1 4.6695 -8.2243 1.1188 19 8 4.1491 -10.2639 1.2199 20 6 3.3198 -8.7409 -0.5519 21 6 4.2498 -8.3946 -1.7152 22 6 4.1957 -9.8871 -2.0892 23 6 2.8395 -9.9449 -1.3630 24 1 -0.4850 -0.8400 -0.0004 25 1 3.1243 -3.7313 -0.8894 26 1 3.1244 -3.7313 0.8905 27 1 3.8008 -6.1835 0.0015 28 1 2.5257 -7.7482 2.2068 29 1 1.7616 -9.2389 1.5037 30 1 4.4410 -10.3817 2.1343 31 1 3.7950 -7.7404 -2.4590 32 1 5.2376 -8.0580 -1.4003 33 1 4.9720 -10.4847 -1.6113 34 1 4.1239 -10.0654 -3.1621 35 1 2.7004 -10.8467 -0.7669 36 1 1.9873 -9.7268 -2.0068 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598315169.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:24 Heat of formation + Delta-G solvation = -51.396136 kcal Electronic energy + Delta-G solvation = -18471.954823 eV Core-core repulsion = 15469.486165 eV Total energy + Delta-G solvation = -3002.468658 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18882 -38.80746 -36.36273 -35.04022 -32.54838 -32.38421 -29.17408 -26.04125 -25.03596 -24.85138 -24.30178 -21.39142 -20.31157 -18.66514 -18.22575 -17.71227 -16.58844 -16.31306 -15.78172 -15.09749 -15.03975 -14.49192 -14.18023 -13.85316 -13.49726 -13.20925 -12.62757 -12.55971 -12.41732 -12.38854 -12.13383 -11.93624 -11.73934 -11.51591 -10.93258 -10.75071 -10.63138 -10.36645 -10.18602 -9.83346 -9.60494 -9.53503 -9.04031 -8.93154 -8.24573 -6.69293 -6.63843 -4.02014 2.84057 2.92798 3.32996 3.36717 3.47510 3.57020 3.81530 4.10626 4.23278 4.25606 4.45524 4.55145 4.61308 4.63614 4.97944 5.10045 5.20840 5.21775 5.38154 5.43360 5.53088 5.57016 5.65843 5.68925 5.72952 5.75919 5.82157 5.91768 5.98458 6.12246 6.22881 6.57742 7.34232 7.58720 7.89835 8.47616 8.48390 9.25314 10.80096 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.039687 B = 0.003537 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.345569 B = 7913.417202 C = 8013.470664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.036 3.964 3 Si 1.084 2.916 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.609 4.609 8 H 0.066 0.934 9 S -0.115 6.115 10 C -0.131 4.131 11 C 0.533 3.467 12 O -0.515 6.515 13 N -0.718 5.718 14 C 0.139 3.861 15 H 0.107 0.893 16 C -0.180 4.180 17 C 0.102 3.898 18 H 0.082 0.918 19 O -0.556 6.556 20 C -0.102 4.102 21 C -0.127 4.127 22 C -0.135 4.135 23 C -0.105 4.105 24 H 0.278 0.722 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.398 0.602 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.377 0.623 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.368 -19.591 0.224 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.175 4.175 3 Si 0.910 3.090 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.757 4.757 8 H 0.084 0.916 9 S 0.111 5.889 10 C -0.282 4.282 11 C 0.320 3.680 12 O -0.389 6.389 13 N -0.371 5.371 14 C 0.033 3.967 15 H 0.125 0.875 16 C -0.219 4.219 17 C 0.043 3.957 18 H 0.100 0.900 19 O -0.361 6.361 20 C -0.103 4.103 21 C -0.164 4.164 22 C -0.172 4.172 23 C -0.142 4.142 24 H 0.090 0.910 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.232 0.768 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.224 0.776 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.959 -18.364 -0.402 20.437 hybrid contribution 2.451 -1.127 0.687 2.784 sum 11.410 -19.491 0.286 22.587 Atomic orbital electron populations 1.70799 1.06712 1.30980 1.43268 1.26055 0.96314 1.02131 0.92976 0.83331 0.74770 0.74204 0.76714 1.20255 1.21124 1.21131 1.23707 0.96027 0.92205 1.63741 0.91612 1.84832 1.08020 0.98780 1.97228 1.23315 1.05180 0.94439 1.05267 1.20314 0.86579 0.86207 0.74949 1.90704 1.15339 1.85492 1.47359 1.45615 1.09722 1.04504 1.77225 1.21435 0.98588 0.80617 0.96083 0.87498 1.24126 0.98310 1.00868 0.98604 1.23147 0.94984 0.83353 0.94196 0.90027 1.86488 1.89475 1.26270 1.33885 1.23087 0.97027 0.97188 0.93026 1.22731 0.99139 0.97228 0.97344 1.22786 0.97856 0.96446 1.00137 1.22456 0.97435 0.96870 0.97467 0.90980 0.88896 0.88961 0.76787 0.90628 0.88528 0.77565 0.89358 0.91376 0.89995 0.91541 0.90327 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.50 13.67 55.49 0.76 -26.74 16 2 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 3 Si 1.08 24.83 29.92 -169.99 -5.09 19.74 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.61 -17.52 9.50 30.94 0.29 -17.22 16 8 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 9 S -0.11 -3.09 19.60 -107.50 -2.11 -5.19 16 10 C -0.13 -2.61 6.16 36.01 0.22 -2.39 16 11 C 0.53 9.78 7.85 -10.99 -0.09 9.69 16 12 O -0.52 -11.56 15.48 5.56 0.09 -11.47 16 13 N -0.72 -9.42 5.06 -53.36 -0.27 -9.69 16 14 C 0.14 1.68 4.09 -67.48 -0.28 1.40 16 15 H 0.11 1.52 7.50 -51.93 -0.39 1.13 16 16 C -0.18 -1.87 7.72 -25.74 -0.20 -2.07 16 17 C 0.10 0.90 5.03 -26.13 -0.13 0.77 16 18 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 19 O -0.56 -4.68 12.87 -35.23 -0.45 -5.13 16 20 C -0.10 -0.99 0.93 -154.55 -0.14 -1.14 16 21 C -0.13 -1.15 7.46 -26.28 -0.20 -1.34 16 22 C -0.13 -1.16 8.08 -25.75 -0.21 -1.37 16 23 C -0.10 -0.98 7.56 -26.29 -0.20 -1.18 16 24 H 0.28 8.83 7.12 -40.82 -0.29 8.54 16 25 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 26 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 27 H 0.40 4.14 8.58 -40.82 -0.35 3.79 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 30 H 0.38 1.69 9.12 45.56 0.42 2.11 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.76 7.66 -51.93 -0.40 0.37 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 316.98 15.07 4.78 4.78 Total: -1.00 -34.91 316.98 -7.76 -42.67 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -4.45 Total: 4.93 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -1.02 Total: -13.90 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.49 Total: -36.43 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.37 Total: -16.60 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.09 Total: 19.74 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.11 Total: -5.19 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.91 -7.76 -42.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598315169.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.727 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds