Wall clock time and date at job start Mon Mar 30 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99845 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99838 * 3 2 1 7 7 C 1.38801 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99941 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99933 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99750 * 180.02562 * 13 11 10 15 15 H 1.08998 * 112.88977 * 25.32765 * 14 13 11 16 16 C 1.53956 * 113.66151 * 253.98423 * 14 13 11 17 17 C 1.53949 * 87.29516 * 270.26264 * 16 14 13 18 18 H 1.08994 * 113.66631 * 89.82984 * 17 16 14 19 19 O 1.42897 * 113.66300 * 220.79363 * 17 16 14 20 20 C 1.52914 * 113.66461 * 156.67765 * 14 13 11 21 21 C 1.52908 * 121.13887 * 323.84809 * 20 14 13 22 22 C 1.53956 * 86.78118 * 209.37729 * 21 20 14 23 23 C 1.52906 * 121.13949 * 215.28296 * 20 14 13 24 24 H 0.97001 * 120.00200 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47176 * 299.99944 * 10 9 7 26 26 H 1.08998 * 109.47231 * 59.99799 * 10 9 7 27 27 H 0.96997 * 120.00437 * 359.97438 * 13 11 10 28 28 H 1.09006 * 113.57915 * 24.86689 * 16 14 13 29 29 H 1.09008 * 113.57994 * 155.65772 * 16 14 13 30 30 H 0.96705 * 114.00198 * 280.50038 * 19 17 16 31 31 H 1.08997 * 113.66367 * 323.85195 * 21 20 14 32 32 H 1.09005 * 113.66173 * 94.90617 * 21 20 14 33 33 H 1.09006 * 113.57780 * 270.13246 * 22 21 20 34 34 H 1.09002 * 113.57806 * 139.34207 * 22 21 20 35 35 H 1.08996 * 113.66824 * 265.10152 * 23 20 14 36 36 H 1.09006 * 113.65943 * 36.06262 * 23 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3430 0.0018 14 6 2.3303 -7.7150 0.0019 15 1 1.3318 -7.7939 -0.4282 16 6 2.4773 -8.4298 1.3575 17 6 3.8578 -8.9087 0.8727 18 1 4.6695 -8.2243 1.1188 19 8 4.1491 -10.2639 1.2199 20 6 3.3198 -8.7409 -0.5519 21 6 4.2498 -8.3946 -1.7152 22 6 4.1957 -9.8871 -2.0892 23 6 2.8395 -9.9449 -1.3630 24 1 -0.4850 -0.8400 -0.0004 25 1 3.1243 -3.7313 -0.8894 26 1 3.1244 -3.7313 0.8905 27 1 3.8008 -6.1835 0.0015 28 1 2.5257 -7.7482 2.2068 29 1 1.7616 -9.2389 1.5037 30 1 4.4410 -10.3817 2.1343 31 1 3.7950 -7.7404 -2.4590 32 1 5.2376 -8.0580 -1.4003 33 1 4.9720 -10.4847 -1.6113 34 1 4.1239 -10.0654 -3.1621 35 1 2.7004 -10.8467 -0.7669 36 1 1.9873 -9.7268 -2.0068 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598315169.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:24 Heat of formation + Delta-G solvation = -77.698962 kcal Electronic energy + Delta-G solvation = -18473.095399 eV Core-core repulsion = 15469.486165 eV Total energy + Delta-G solvation = -3003.609235 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.08295 -40.18228 -37.03884 -36.07621 -34.75113 -33.55048 -30.68131 -27.11271 -26.77831 -25.75970 -25.22502 -22.42917 -21.49118 -20.47863 -19.35275 -18.54083 -17.82608 -17.49160 -16.71522 -16.54022 -16.33006 -15.82434 -15.66499 -15.07255 -14.90138 -14.50948 -14.26054 -13.96665 -13.68544 -13.36392 -13.28820 -12.96452 -12.74774 -12.72294 -12.25683 -11.95293 -11.62933 -11.54128 -11.39740 -11.14273 -11.09619 -11.03154 -10.58402 -10.33168 -10.09180 -8.92647 -8.87773 -6.28168 1.17015 1.46289 1.52380 1.61083 1.81218 2.07514 2.34691 3.02407 3.09910 3.14514 3.30907 3.45503 3.65686 3.76481 3.79500 3.89103 3.93136 4.16154 4.36099 4.36247 4.48732 4.57103 4.72578 4.82493 4.83757 4.91683 4.94118 5.05675 5.12701 5.36691 5.46689 5.51610 5.64051 6.14568 6.38723 6.89625 7.06077 7.12378 8.50875 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.039687 B = 0.003537 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.345569 B = 7913.417202 C = 8013.470664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.019 4.019 3 Si 1.137 2.863 4 H -0.281 1.281 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.615 4.615 8 H 0.076 0.924 9 S -0.196 6.196 10 C -0.109 4.109 11 C 0.537 3.463 12 O -0.564 6.564 13 N -0.689 5.689 14 C 0.125 3.875 15 H 0.079 0.921 16 C -0.177 4.177 17 C 0.117 3.883 18 H 0.101 0.899 19 O -0.565 6.565 20 C -0.098 4.098 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.109 4.109 24 H 0.260 0.740 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.416 0.584 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.396 0.604 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.559 -20.233 0.402 24.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.222 4.222 3 Si 0.954 3.046 4 H -0.206 1.206 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.762 4.762 8 H 0.095 0.905 9 S 0.031 5.969 10 C -0.260 4.260 11 C 0.323 3.677 12 O -0.442 6.442 13 N -0.342 5.342 14 C 0.019 3.981 15 H 0.097 0.903 16 C -0.216 4.216 17 C 0.058 3.942 18 H 0.119 0.881 19 O -0.373 6.373 20 C -0.099 4.099 21 C -0.163 4.163 22 C -0.165 4.165 23 C -0.147 4.147 24 H 0.071 0.929 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.254 0.746 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.246 0.754 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.214 -19.074 -0.209 22.650 hybrid contribution 1.485 -1.109 0.642 1.961 sum 13.699 -20.182 0.432 24.396 Atomic orbital electron populations 1.70919 1.08064 1.30015 1.45895 1.27836 0.96286 1.06394 0.91649 0.82719 0.73937 0.69465 0.78473 1.20621 1.18758 1.18723 1.24047 0.96567 0.92766 1.62841 0.90545 1.85091 1.13178 1.01183 1.97491 1.23215 1.02195 0.93372 1.07220 1.20046 0.86252 0.86551 0.74889 1.90697 1.17437 1.85981 1.50105 1.45286 1.10010 1.03938 1.74943 1.21571 0.98208 0.80235 0.98038 0.90276 1.24102 0.99846 1.00490 0.97166 1.23007 0.94346 0.84047 0.92771 0.88104 1.86449 1.89474 1.25707 1.35668 1.23094 0.96498 0.96259 0.94086 1.22734 0.99501 0.97487 0.96609 1.22744 0.97091 0.96079 1.00547 1.22488 0.98028 0.96564 0.97575 0.92872 0.86861 0.86822 0.74646 0.91064 0.88602 0.75385 0.90189 0.89853 0.89570 0.90817 0.90623 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.10 13.67 21.65 0.30 -57.80 16 2 C -0.02 -1.07 5.49 84.86 0.47 -0.61 16 3 Si 1.14 48.89 29.92 68.60 2.05 50.94 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.61 -35.24 9.50 67.95 0.65 -34.59 16 8 H 0.08 4.08 7.80 -2.91 -0.02 4.06 16 9 S -0.20 -10.76 19.60 -56.49 -1.11 -11.86 16 10 C -0.11 -4.21 6.16 71.24 0.44 -3.77 16 11 C 0.54 19.41 7.85 87.66 0.69 20.09 16 12 O -0.56 -25.99 15.48 -3.03 -0.05 -26.03 16 13 N -0.69 -16.96 5.06 -441.14 -2.23 -19.19 16 14 C 0.13 2.91 4.09 45.29 0.19 3.10 16 15 H 0.08 2.32 7.50 -2.39 -0.02 2.30 16 16 C -0.18 -3.42 7.72 31.23 0.24 -3.18 16 17 C 0.12 1.74 5.03 30.98 0.16 1.89 16 18 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 19 O -0.56 -7.78 12.87 -148.98 -1.92 -9.70 16 20 C -0.10 -1.72 0.93 -52.21 -0.05 -1.77 16 21 C -0.13 -1.95 7.46 30.89 0.23 -1.72 16 22 C -0.13 -1.88 8.08 31.23 0.25 -1.63 16 23 C -0.11 -1.89 7.56 30.88 0.23 -1.66 16 24 H 0.26 17.23 7.12 -92.71 -0.66 16.57 16 25 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 26 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 27 H 0.42 7.35 8.58 -92.71 -0.80 6.56 16 28 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.40 2.24 9.12 -74.05 -0.68 1.56 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.37 7.66 -2.39 -0.02 1.35 16 36 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -77.64 316.98 0.27 -77.37 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -0.26 Total: 20.11 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 3.49 Total: -23.84 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -1.94 Total: -76.99 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.96 Total: -35.73 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.05 Total: 50.94 kcal Atomic # 16 Polarization: -10.76 SS G_CDS: -1.11 Total: -11.86 kcal Total: -77.64 0.27 -77.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598315169.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.330 kcal (2) G-P(sol) polarization free energy of solvation -77.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds